Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:21:26 (25025): wrapper (7.7.26015): starting
01:21:26 (25025): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:21:26] Arguments: --nthreads 8
[2025-06-05 01:21:26] Threads: 8
[2025-06-05 01:21:26] Checking for CVMFS
[2025-06-05 01:21:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:21:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:21:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:21:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:21:29] 2.11.2.0 896 33849 89628 146798 0 158 24481696 25165824 3619 130560 0 17015644 99.795 19900087 2388 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:21:29] CVMFS is ok
[2025-06-05 01:21:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:21:29] Checking for apptainer binary...
[2025-06-05 01:21:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:21:29] Running /usr/bin/apptainer --version
[2025-06-05 01:21:29] apptainer version 1.3.2-1.el7
[2025-06-05 01:21:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:21:42] cg-vwn277.simple-grid.lan
[2025-06-05 01:21:42] apptainer works
[2025-06-05 01:21:42] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:21:42] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:21:42] Starting ATLAS job with PandaID=6678363775
[2025-06-05 01:21:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:30:20]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:30:20] 2025-06-05 03:11:57,099 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6678363775/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,100 | INFO     | extracted standard info from prmon json
[2025-06-05 07:30:20] 2025-06-05 03:11:57,100 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:30:20] 2025-06-05 03:11:57,100 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:30:20] 2025-06-05 03:11:57,100 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:30:20] 2025-06-05 03:11:57,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:30:20] 2025-06-05 03:11:57,105 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:30:20] 2025-06-05 03:11:57,106 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,108 | INFO     | sum of deviations: -31325488691.5
[2025-06-05 07:30:20] 2025-06-05 03:11:57,108 | INFO     | mean x: 1749086198.5
[2025-06-05 07:30:20] 2025-06-05 03:11:57,108 | INFO     | mean y: 2507550.620535714
[2025-06-05 07:30:20] 2025-06-05 03:11:57,108 | INFO     | -- intersect: 15724053318.946331
[2025-06-05 07:30:20] 2025-06-05 03:11:57,109 | INFO     | intersect: 15724053318.946331
[2025-06-05 07:30:20] 2025-06-05 03:11:57,109 | INFO     | chi2: 2.7398357553533357
[2025-06-05 07:30:20] 2025-06-05 03:11:57,110 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,115 | INFO     | sum of deviations: -15675398261.999998
[2025-06-05 07:30:20] 2025-06-05 03:11:57,115 | INFO     | mean x: 1749086046.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,115 | INFO     | mean y: 2517830.598173516
[2025-06-05 07:30:20] 2025-06-05 03:11:57,115 | INFO     | -- intersect: 8420888523.905625
[2025-06-05 07:30:20] 2025-06-05 03:11:57,115 | INFO     | intersect: 8420888523.905625
[2025-06-05 07:30:20] 2025-06-05 03:11:57,116 | INFO     | chi2: 1.9780163868471965
[2025-06-05 07:30:20] 2025-06-05 03:11:57,116 | INFO     | current chi2=1.9780163868471965 (change=27.805293328902238 %)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,116 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 07:30:20] 2025-06-05 03:11:57,118 | INFO     | sum of deviations: -15029935912.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,118 | INFO     | mean x: 1749085893.5
[2025-06-05 07:30:20] 2025-06-05 03:11:57,118 | INFO     | mean y: 2518282.1588785048
[2025-06-05 07:30:20] 2025-06-05 03:11:57,118 | INFO     | -- intersect: 8653352815.844418
[2025-06-05 07:30:20] 2025-06-05 03:11:57,119 | INFO     | intersect: 8653352815.844418
[2025-06-05 07:30:20] 2025-06-05 03:11:57,119 | INFO     | chi2: 1.9770547748614271
[2025-06-05 07:30:20] 2025-06-05 03:11:57,119 | INFO     | current chi2=1.9770547748614271 (change=0.04861496558691904 %)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,119 | INFO     | right removable region: 213
[2025-06-05 07:30:20] 2025-06-05 03:11:57,120 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,121 | INFO     | sum of deviations: -71929826463.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,122 | INFO     | mean x: 1749086351.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,122 | INFO     | mean y: 2534465.5114155253
[2025-06-05 07:30:20] 2025-06-05 03:11:57,122 | INFO     | -- intersect: 38631986715.502556
[2025-06-05 07:30:20] 2025-06-05 03:11:57,122 | INFO     | intersect: 38631986715.502556
[2025-06-05 07:30:20] 2025-06-05 03:11:57,123 | INFO     | chi2: 1.0110101652179668
[2025-06-05 07:30:20] 2025-06-05 03:11:57,123 | INFO     | current chi2=1.0110101652179668 (change=63.0996068562663 %)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,123 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 07:30:20] 2025-06-05 03:11:57,128 | INFO     | sum of deviations: -69202374455.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,128 | INFO     | mean x: 1749086503.5
[2025-06-05 07:30:20] 2025-06-05 03:11:57,128 | INFO     | mean y: 2532523.504672897
[2025-06-05 07:30:20] 2025-06-05 03:11:57,129 | INFO     | -- intersect: 39833607189.27303
[2025-06-05 07:30:20] 2025-06-05 03:11:57,129 | INFO     | intersect: 39833607189.27303
[2025-06-05 07:30:20] 2025-06-05 03:11:57,129 | INFO     | chi2: 0.9993227450934824
[2025-06-05 07:30:20] 2025-06-05 03:11:57,129 | INFO     | current chi2=0.9993227450934824 (change=1.1560141061454805 %)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,129 | INFO     | left removable region: 20
[2025-06-05 07:30:20] 2025-06-05 03:11:57,130 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,131 | INFO     | sum of deviations: -39046762826.00001
[2025-06-05 07:30:20] 2025-06-05 03:11:57,131 | INFO     | mean x: 1749086473.0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,131 | INFO     | mean y: 2534646.652849741
[2025-06-05 07:30:20] 2025-06-05 03:11:57,131 | INFO     | -- intersect: 30640337972.105392
[2025-06-05 07:30:20] 2025-06-05 03:11:57,132 | INFO     | intersect: 30640337972.105392
[2025-06-05 07:30:20] 2025-06-05 03:11:57,132 | INFO     | chi2: 0.19094672049312272
[2025-06-05 07:30:20] 2025-06-05 03:11:57,132 | INFO     | -- intersect: 30640337972.105392
[2025-06-05 07:30:20] 2025-06-05 03:11:57,132 | INFO     | current memory leak: -17.52 B/s (using 193 data points, chi2=0.19)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,133 | INFO     | ..............................
[2025-06-05 07:30:20] 2025-06-05 03:11:57,133 | INFO     | . Timing measurements:
[2025-06-05 07:30:20] 2025-06-05 03:11:57,133 | INFO     | . get job = 0 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | . initial setup = 2 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | . payload setup = 15 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | . stage-in = 0 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | . payload execution = 13652 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | . stage-out = 3 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | . log creation = 1 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,134 | INFO     | ..............................
[2025-06-05 07:30:20] 2025-06-05 03:11:57,273 | INFO     | 
[2025-06-05 07:30:20] 2025-06-05 03:11:57,273 | INFO     | job summary report
[2025-06-05 07:30:20] 2025-06-05 03:11:57,273 | INFO     | --------------------------------------------------
[2025-06-05 07:30:20] 2025-06-05 03:11:57,273 | INFO     | PanDA job id: 6678363775
[2025-06-05 07:30:20] 2025-06-05 03:11:57,273 | INFO     | task id: 45006595
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | errors: (none)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | pilot state: finished 
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | transexitcode: 0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | exeerrorcode: 0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | exeerrordiag: 
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | exitcode: 0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | exitmsg: OK
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | cpuconsumptiontime: 52404 s
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | nevents: 400
[2025-06-05 07:30:20] 2025-06-05 03:11:57,274 | INFO     | neventsw: 0
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | pid: 9232
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | pgrp: 9232
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | corecount: 8
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | event service: False
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | sizes: {0: 2397114, 1: 2397369, 2: 2397369, 12: 2397397, 14: 2397631, 23: 2397659, 13669: 2427381, 13674: 2436378, 13758: 2436492}
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | --------------------------------------------------
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | 
[2025-06-05 07:30:20] 2025-06-05 03:11:57,275 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,738 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:30:20] 2025-06-05 03:11:57,738 | INFO     | job 6678363775 has completed (purged errors)
[2025-06-05 07:30:20] 2025-06-05 03:11:57,738 | INFO     | overall cleanup function is called
[2025-06-05 07:30:20] 2025-06-05 03:11:58,746 | INFO     | --- collectZombieJob: --- 10, [9232]
[2025-06-05 07:30:20] 2025-06-05 03:11:58,746 | INFO     | zombie collector waiting for pid 9232
[2025-06-05 07:30:20] 2025-06-05 03:11:58,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:30:20] 2025-06-05 03:11:58,747 | INFO     | collected zombie processes
[2025-06-05 07:30:20] 2025-06-05 03:11:58,747 | INFO     | will attempt to kill all subprocesses of pid=9232
[2025-06-05 07:30:20] 2025-06-05 03:11:58,863 | INFO     | process IDs to be killed: [9232] (in reverse order)
[2025-06-05 07:30:20] 2025-06-05 03:11:59,638 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:30:20] 2025-06-05 03:11:59,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:30:20] 2025-06-05 03:11:59,642 | INFO     | did not find any defunct processes belonging to 9232
[2025-06-05 07:30:20] 2025-06-05 03:11:59,648 | INFO     | did not find any defunct processes belonging to 9232
[2025-06-05 07:30:20] 2025-06-05 03:11:59,649 | INFO     | ready for new job
[2025-06-05 07:30:20] 2025-06-05 03:11:59,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:30:20] 2025-06-05 03:11:59,651 | INFO     | **************************************
[2025-06-05 07:30:20] 2025-06-05 03:11:59,651 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:30:20] 2025-06-05 03:11:59,651 | INFO     | **************************************
[2025-06-05 07:30:20] 2025-06-05 03:11:59,651 | INFO     | 
[2025-06-05 07:30:20] 2025-06-05 03:11:59,652 | INFO     | pilot is running in a VM
[2025-06-05 07:30:20] 2025-06-05 03:11:59,652 | INFO     | architecture information:
[2025-06-05 07:30:20] 2025-06-05 03:11:59,662 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:30:20] 2025-06-05 03:11:59,837 | INFO     | cat /etc/os-release:
[2025-06-05 07:30:20] NAME="CentOS Linux"
[2025-06-05 07:30:20] VERSION="7 (Core)"
[2025-06-05 07:30:20] ID="centos"
[2025-06-05 07:30:20] ID_LIKE="rhel fedora"
[2025-06-05 07:30:20] VERSION_ID="7"
[2025-06-05 07:30:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:30:20] ANSI_COLOR="0;31"
[2025-06-05 07:30:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:30:20] HOME_URL="https://www.centos.org/"
[2025-06-05 07:30:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:30:20] 
[2025-06-05 07:30:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:30:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:30:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:30:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:30:20] 
[2025-06-05 07:30:20] 2025-06-05 03:11:59,838 | INFO     | **************************************
[2025-06-05 07:30:20] 2025-06-05 03:12:00,341 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 07:30:20] 2025-06-05 03:12:00,474 | INFO     | sufficient remaining disk space (496977838080 B)
[2025-06-05 07:30:20] 2025-06-05 03:12:00,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:30:20] 2025-06-05 03:12:00,474 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:30:20] 2025-06-05 03:12:00,474 | INFO     | update_server=False
[2025-06-05 07:30:20] 2025-06-05 03:12:00,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:30:20] 2025-06-05 03:12:00,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:30:20] 2025-06-05 03:12:00,481 | INFO     | aborting loop
[2025-06-05 07:30:20] 2025-06-05 03:12:00,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:30:20] 2025-06-05 03:12:00,578 | INFO     | all payload control threads have been joined
[2025-06-05 07:30:20] 2025-06-05 03:12:00,725 | INFO     | all data control threads have been joined
[2025-06-05 07:30:20] 2025-06-05 03:12:00,836 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:30:20] 2025-06-05 03:12:00,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:30:20] 2025-06-05 03:12:00,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:30:20] 2025-06-05 03:12:01,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:30:20] 2025-06-05 03:12:01,480 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,487 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,515 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,574 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,585 | INFO     | [payload] control thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,731 | INFO     | [data] control thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,737 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:01,749 | INFO     | [job] validate thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:02,141 | INFO     | all job control threads have been joined
[2025-06-05 07:30:20] 2025-06-05 03:12:02,240 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:02,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:30:20] 2025-06-05 03:12:02,525 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:02,605 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:02,808 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:03,147 | INFO     | [job] control thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:03,294 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:03,381 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:04,568 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:30:20] 2025-06-05 03:12:06,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140422165206848)>', '<ExcThread(monitor, started 140421724362496)>']
[2025-06-05 07:30:20] 2025-06-05 03:12:06,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:30:20] 2025-06-05 03:12:06,872 | INFO     | [monitor] control thread has ended
[2025-06-05 07:30:20] 2025-06-05 03:12:11,452 | INFO     | all workflow threads have been joined
[2025-06-05 07:30:20] 2025-06-05 03:12:11,452 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:30:20] 2025-06-05 03:12:11,453 | INFO     | traces error code: 0
[2025-06-05 07:30:20] 2025-06-05 03:12:11,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:30:20] 2025-06-05 03:12:11,824 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:30:20] 2025-06-05 03:12:11,869 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:30:20] 2025-06-05 03:12:11,919 [wrapper] pilotpid: 31730
[2025-06-05 07:30:20] 2025-06-05 03:12:11,960 [wrapper] Pilot exit status: 0
[2025-06-05 07:30:20] 2025-06-05 03:12:12,393 [wrapper] pandaids: 6678363775
[2025-06-05 07:30:20] 2025-06-05 03:12:12,876 [wrapper] cleanup supervisor_pilot  6478 31731
[2025-06-05 07:30:20] 2025-06-05 03:12:12,921 [wrapper] Test setup, not cleaning
[2025-06-05 07:30:20] 2025-06-05 03:12:12,966 [wrapper] apfmon messages muted
[2025-06-05 07:30:20] 2025-06-05 03:12:13,014 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:30:20] 2025-06-05 03:12:13,119 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:30:20]  *** Error codes and diagnostics ***
[2025-06-05 07:30:20]     "exeErrorCode": 0,
[2025-06-05 07:30:20]     "exeErrorDiag": "",
[2025-06-05 07:30:20]     "pilotErrorCode": 0,
[2025-06-05 07:30:20]     "pilotErrorDiag": "",
[2025-06-05 07:30:20]  *** Listing of results directory ***
[2025-06-05 07:30:20] total 397604
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 07:30:20] -rwx------. 1 boinc boinc     37140 Jun  4 07:46 runpilot2-wrapper.sh
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:46 queuedata.json
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:30:20] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:21 run_atlas
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:21 job.xml
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc      6390 Jun  5 01:21 init_data.xml
[2025-06-05 07:30:20] -rw-r--r--. 2 boinc boinc 218110125 Jun  5 01:21 EVNT.45006593._002147.pool.root.1
[2025-06-05 07:30:20] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:21 start_atlas.sh
[2025-06-05 07:30:20] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:21 shared
[2025-06-05 07:30:20] -rw-r--r--. 2 boinc boinc    508876 Jun  5 01:21 input.tar.gz
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:21 boinc_lockfile
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc      2524 Jun  5 01:21 pandaJob.out
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc    987117 Jun  5 01:22 agis_schedconf.cvmfs.json
[2025-06-05 07:30:20] drwx------. 4 boinc boinc      4096 Jun  5 01:22 pilot3
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc 182068911 Jun  5 05:09 HITS.45006595._053650.pool.root.1
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc       531 Jun  5 05:09 boinc_task_state.xml
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc      1018 Jun  5 05:10 memory_monitor_summary.json
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc   1598969 Jun  5 05:10 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc    388867 Jun  5 05:10 log.45006595._053650.job.log.tgz.1
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc        95 Jun  5 05:11 pilot_heartbeat.json
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc      7693 Jun  5 05:11 heartbeat.json
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc      4416 Jun  5 05:12 pilotlog.txt
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc   1187628 Jun  5 05:12 log.45006595._053650.job.log.1
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc       357 Jun  5 05:12 output.list
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc       620 Jun  5 05:12 runtime_log
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc   1597440 Jun  5 05:12 result.tar.gz
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc      8659 Jun  5 05:12 runtime_log.err
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc       657 Jun  5 05:12 Ns5KDmb8vg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmvnaKDm2oQuLn.diag
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc      8192 Jun  5 07:30 boinc_mmap_file
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc        28 Jun  5 07:30 wrapper_checkpoint.txt
[2025-06-05 07:30:20] -rw-r--r--. 1 boinc boinc     20482 Jun  5 07:30 stderr.txt
[2025-06-05 07:30:20] HITS file was successfully produced:
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc 182068911 Jun  5 05:09 shared/HITS.pool.root.1
[2025-06-05 07:30:20]  *** Contents of shared directory: ***
[2025-06-05 07:30:20] total 392880
[2025-06-05 07:30:20] -rw-r--r--. 2 boinc boinc 218110125 Jun  5 01:21 ATLAS.root_0
[2025-06-05 07:30:20] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:21 start_atlas.sh
[2025-06-05 07:30:20] -rw-r--r--. 2 boinc boinc    508876 Jun  5 01:21 input.tar.gz
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc 182068911 Jun  5 05:09 HITS.pool.root.1
[2025-06-05 07:30:20] -rw-------. 1 boinc boinc   1597440 Jun  5 05:12 result.tar.gz
07:30:22 (25025): run_atlas exited; CPU time 52579.907713
07:30:22 (25025): called boinc_finish(0)

</stderr_txt>
]]>

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