Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:43:02 (1137995): wrapper (7.7.26015): starting
12:43:02 (1137995): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 12:43:02] Arguments: --nthreads 12
[2025-06-05 12:43:02] Threads: 12
[2025-06-05 12:43:02] Checking for CVMFS
[2025-06-05 12:43:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 12:43:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 12:43:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 12:43:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 12:43:06] 2.12.7.0 16016 3196 62544 146819 1 55 2259651 4096000 912 130560 0 3029003 99.992 787661 149 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 12:43:06] CVMFS is ok
[2025-06-05 12:43:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 12:43:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 12:43:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 12:43:06] Further information can be found at the LHC@home message board.
[2025-06-05 12:43:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 12:43:06] Checking for apptainer binary...
[2025-06-05 12:43:06] apptainer is not installed, using version from CVMFS
[2025-06-05 12:43:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 12:43:08] g3250
[2025-06-05 12:43:08] apptainer works
[2025-06-05 12:43:08] Set ATHENA_PROC_NUMBER=12
[2025-06-05 12:43:08] Set ATHENA_CORE_NUMBER=12
[2025-06-05 12:43:08] Starting ATLAS job with PandaID=6678363314
[2025-06-05 12:43:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 15:49:13]  *** The last 200 lines of the pilot log: ***
[2025-06-05 15:49:13] 2025-06-05 15:48:58,592 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 15:49:13] 2025-06-05 15:48:58,592 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 15:49:13] 2025-06-05 15:48:58,595 | INFO     | fitting pss+swap vs Time
[2025-06-05 15:49:13] 2025-06-05 15:48:58,598 | INFO     | sum of square deviations: 1748737904.5
[2025-06-05 15:49:13] 2025-06-05 15:48:58,599 | INFO     | sum of deviations: 3206965230.5000134
[2025-06-05 15:49:13] 2025-06-05 15:48:58,599 | INFO     | mean x: 1749133015.5
[2025-06-05 15:49:13] 2025-06-05 15:48:58,600 | INFO     | mean y: 2661906.6235955055
[2025-06-05 15:49:13] 2025-06-05 15:48:58,600 | INFO     | -- intersect: -3205027907.7239614
[2025-06-05 15:49:13] 2025-06-05 15:48:58,600 | INFO     | intersect: -3205027907.7239614
[2025-06-05 15:49:13] 2025-06-05 15:48:58,600 | INFO     | chi2: 3.37264735829571
[2025-06-05 15:49:13] 2025-06-05 15:48:58,600 | INFO     | sum of square deviations: 1605470102.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,601 | INFO     | sum of deviations: 15296566667.99999
[2025-06-05 15:49:13] 2025-06-05 15:48:58,601 | INFO     | mean x: 1749132863.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,601 | INFO     | mean y: 2674485.4046242773
[2025-06-05 15:49:13] 2025-06-05 15:48:58,601 | INFO     | -- intersect: -16662679429.77479
[2025-06-05 15:49:13] 2025-06-05 15:48:58,601 | INFO     | intersect: -16662679429.77479
[2025-06-05 15:49:13] 2025-06-05 15:48:58,602 | INFO     | chi2: 2.6957045902149375
[2025-06-05 15:49:13] 2025-06-05 15:48:58,602 | INFO     | current chi2=2.6957045902149375 (change=20.07155495862011 %)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,602 | INFO     | right removable region: 172
[2025-06-05 15:49:13] 2025-06-05 15:48:58,602 | INFO     | sum of square deviations: 1605470102.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,627 | INFO     | sum of deviations: -39934932891.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,628 | INFO     | mean x: 1749133168.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,628 | INFO     | mean y: 2707508.8901734105
[2025-06-05 15:49:13] 2025-06-05 15:48:58,628 | INFO     | -- intersect: 43511157522.68073
[2025-06-05 15:49:13] 2025-06-05 15:48:58,628 | INFO     | intersect: 43511157522.68073
[2025-06-05 15:49:13] 2025-06-05 15:48:58,629 | INFO     | chi2: 1.0507942584420358
[2025-06-05 15:49:13] 2025-06-05 15:48:58,629 | INFO     | current chi2=1.0507942584420358 (change=68.8436368582267 %)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,629 | INFO     | sum of square deviations: 1470248962.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | sum of deviations: -45714018112.99999
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | mean x: 1749133320.5
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | mean y: 2713932.6666666665
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | -- intersect: 54388001296.93608
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | intersect: 54388001296.93608
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | chi2: 0.9507639648693643
[2025-06-05 15:49:13] 2025-06-05 15:48:58,630 | INFO     | current chi2=0.9507639648693643 (change=9.519493732386945 %)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,631 | INFO     | left removable region: 20
[2025-06-05 15:49:13] 2025-06-05 15:48:58,631 | INFO     | sum of square deviations: 1088905998.0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | sum of deviations: -17741745964.5
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | mean x: 1749133442.5
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | mean y: 2709401.085526316
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | -- intersect: 28501662710.04357
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | intersect: 28501662710.04357
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | chi2: 0.17761694050015187
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | -- intersect: 28501662710.04357
[2025-06-05 15:49:13] 2025-06-05 15:48:58,632 | INFO     | current memory leak: -16.29 B/s (using 152 data points, chi2=0.18)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,633 | INFO     | ..............................
[2025-06-05 15:49:13] 2025-06-05 15:48:58,633 | INFO     | . Timing measurements:
[2025-06-05 15:49:13] 2025-06-05 15:48:58,633 | INFO     | . get job = 0 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,633 | INFO     | . initial setup = 5 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,633 | INFO     | . payload setup = 58 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,633 | INFO     | . stage-in = 0 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,634 | INFO     | . payload execution = 10861 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,634 | INFO     | . stage-out = 2 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,634 | INFO     | . log creation = 0 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,634 | INFO     | ..............................
[2025-06-05 15:49:13] 2025-06-05 15:48:58,667 | INFO     | sufficient remaining disk space (29905387520 B)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,667 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,668 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6678363314: 4850380 B (within 2537553920 B limit)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,668 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6678363314/HITS.45006595._053354.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,668 | INFO     | total size of present files: 0 B (workdir size: 4850380 B)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,668 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6678363314/HITS.45006595._053354.pool.root.1 since it does n
[2025-06-05 15:49:13] 2025-06-05 15:48:58,975 | INFO     | 
[2025-06-05 15:49:13] 2025-06-05 15:48:58,976 | INFO     | job summary report
[2025-06-05 15:49:13] 2025-06-05 15:48:58,976 | INFO     | --------------------------------------------------
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | PanDA job id: 6678363314
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | task id: 45006595
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | errors: (none)
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | pilot state: finished 
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | transexitcode: 0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | exeerrorcode: 0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | exeerrordiag: 
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | exitcode: 0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,977 | INFO     | exitmsg: OK
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | cpuconsumptiontime: 38891 s
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | nevents: 400
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | neventsw: 0
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | pid: 1148068
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | pgrp: 1148068
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | corecount: 12
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | event service: False
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | sizes: {0: 2397138, 1: 2397222, 2: 2397421, 13: 2397421, 23: 2397477, 34: 2397867, 45: 2397867, 10923: 2426330, 10925: 2435317, 10926: 2435373, 11009: 2435731}
[2025-06-05 15:49:13] 2025-06-05 15:48:58,978 | INFO     | --------------------------------------------------
[2025-06-05 15:49:13] 2025-06-05 15:48:58,982 | INFO     | 
[2025-06-05 15:49:13] 2025-06-05 15:48:58,983 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-06-05 15:49:13] 2025-06-05 15:48:58,979 | INFO     | number of running child processes to parent process 1148068: 1
[2025-06-05 15:49:13] 2025-06-05 15:48:58,995 | INFO     | maximum number of monitored processes: 6
[2025-06-05 15:49:13] 2025-06-05 15:48:58,995 | INFO     | aborting job monitoring since job object (job id=6678363314) has expired
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,028 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 15:49:13] 2025-06-05 15:48:59,029 | INFO     | job 6678363314 has completed (purged errors)
[2025-06-05 15:49:13] 2025-06-05 15:48:59,029 | INFO     | overall cleanup function is called
[2025-06-05 15:49:13] 2025-06-05 15:49:00,038 | INFO     | --- collectZombieJob: --- 10, [1148068]
[2025-06-05 15:49:13] 2025-06-05 15:49:00,039 | INFO     | zombie collector waiting for pid 1148068
[2025-06-05 15:49:13] 2025-06-05 15:49:00,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 15:49:13] 2025-06-05 15:49:00,039 | INFO     | collected zombie processes
[2025-06-05 15:49:13] 2025-06-05 15:49:00,039 | INFO     | will attempt to kill all subprocesses of pid=1148068
[2025-06-05 15:49:13] 2025-06-05 15:49:00,197 | INFO     | process IDs to be killed: [1148068] (in reverse order)
[2025-06-05 15:49:13] 2025-06-05 15:49:00,560 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 15:49:13] 2025-06-05 15:49:00,560 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 15:49:13] 2025-06-05 15:49:00,562 | INFO     | did not find any defunct processes belonging to 1148068
[2025-06-05 15:49:13] 2025-06-05 15:49:00,568 | INFO     | did not find any defunct processes belonging to 1148068
[2025-06-05 15:49:13] 2025-06-05 15:49:00,568 | INFO     | ready for new job
[2025-06-05 15:49:13] 2025-06-05 15:49:00,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 15:49:13] 2025-06-05 15:49:00,569 | INFO     | **************************************
[2025-06-05 15:49:13] 2025-06-05 15:49:00,569 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 15:49:13] 2025-06-05 15:49:00,569 | INFO     | **************************************
[2025-06-05 15:49:13] 2025-06-05 15:49:00,569 | INFO     | 
[2025-06-05 15:49:13] 2025-06-05 15:49:00,591 | INFO     | architecture information:
[2025-06-05 15:49:13] 2025-06-05 15:49:00,598 | INFO     | executing command: cat /etc/os-release
[2025-06-05 15:49:13] 2025-06-05 15:49:00,619 | INFO     | cat /etc/os-release:
[2025-06-05 15:49:13] NAME="CentOS Linux"
[2025-06-05 15:49:13] VERSION="7 (Core)"
[2025-06-05 15:49:13] ID="centos"
[2025-06-05 15:49:13] ID_LIKE="rhel fedora"
[2025-06-05 15:49:13] VERSION_ID="7"
[2025-06-05 15:49:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 15:49:13] ANSI_COLOR="0;31"
[2025-06-05 15:49:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 15:49:13] HOME_URL="https://www.centos.org/"
[2025-06-05 15:49:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 15:49:13] 
[2025-06-05 15:49:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 15:49:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 15:49:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 15:49:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 15:49:13] 
[2025-06-05 15:49:13] 2025-06-05 15:49:00,619 | INFO     | **************************************
[2025-06-05 15:49:13] 2025-06-05 15:49:01,122 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-06-05 15:49:13] 2025-06-05 15:49:01,159 | INFO     | sufficient remaining disk space (29911678976 B)
[2025-06-05 15:49:13] 2025-06-05 15:49:01,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 15:49:13] 2025-06-05 15:49:01,159 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 15:49:13] 2025-06-05 15:49:01,159 | INFO     | update_server=False
[2025-06-05 15:49:13] 2025-06-05 15:49:01,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 15:49:13] 2025-06-05 15:49:01,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 15:49:13] 2025-06-05 15:49:01,165 | INFO     | all job control threads have been joined
[2025-06-05 15:49:13] 2025-06-05 15:49:01,242 | INFO     | all data control threads have been joined
[2025-06-05 15:49:13] 2025-06-05 15:49:01,526 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 15:49:13] 2025-06-05 15:49:01,527 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 15:49:13] 2025-06-05 15:49:01,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:49:13] 2025-06-05 15:49:01,527 | INFO     | will abort loop
[2025-06-05 15:49:13] 2025-06-05 15:49:01,535 | INFO     | PID=1141603 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 15:49:13] 2025-06-05 15:49:01,535 | INFO     | .. there are 2 such processes running
[2025-06-05 15:49:13] 2025-06-05 15:49:01,535 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 15:49:13] 2025-06-05 15:49:01,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 15:49:13] 2025-06-05 15:49:01,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 15:49:13] 2025-06-05 15:49:01,642 | INFO     | all payload control threads have been joined
[2025-06-05 15:49:13] 2025-06-05 15:49:02,167 | INFO     | [job] retrieve thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,170 | INFO     | [job] control thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,219 | INFO     | [payload] validate_post thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,247 | INFO     | [data] control thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,491 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 15:49:13] 2025-06-05 15:49:02,531 | INFO     | [job] job monitor thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,639 | INFO     | [data] copytool_in thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,642 | INFO     | [payload] failed_post thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:02,646 | INFO     | [payload] control thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:03,142 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:03,170 | INFO     | [data] copytool_out thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:03,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:03,539 | INFO     | [job] validate thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:03,586 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:03,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 15:49:13] 2025-06-05 15:49:05,006 | INFO     | [job] queue monitor thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:06,522 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 15:49:13] 2025-06-05 15:49:06,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139756104398656)>', '<ExcThread(monitor, started 139755660494592)>']
[2025-06-05 15:49:13] 2025-06-05 15:49:07,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 15:49:13] 2025-06-05 15:49:07,563 | INFO     | [monitor] control thread has ended
[2025-06-05 15:49:13] 2025-06-05 15:49:11,690 | INFO     | all workflow threads have been joined
[2025-06-05 15:49:13] 2025-06-05 15:49:11,691 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 15:49:13] 2025-06-05 15:49:11,691 | INFO     | traces error code: 0
[2025-06-05 15:49:13] 2025-06-05 15:49:11,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 15:49:13] 2025-06-05 15:49:11,994 [wrapper] ==== pilot stdout END ====
[2025-06-05 15:49:13] 2025-06-05 15:49:12,015 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 15:49:13] 2025-06-05 15:49:12,048 [wrapper] pilotpid: 1141603
[2025-06-05 15:49:13] 2025-06-05 15:49:12,067 [wrapper] Pilot exit status: 0
[2025-06-05 15:49:13] 2025-06-05 15:49:12,226 [wrapper] pandaids: 6678363314
[2025-06-05 15:49:13] 2025-06-05 15:49:12,322 [wrapper] cleanup supervisor_pilot 1199054 1141604
[2025-06-05 15:49:13] 2025-06-05 15:49:12,367 [wrapper] Test setup, not cleaning
[2025-06-05 15:49:13] 2025-06-05 15:49:12,411 [wrapper] apfmon messages muted
[2025-06-05 15:49:13] 2025-06-05 15:49:12,458 [wrapper] ==== wrapper stdout END ====
[2025-06-05 15:49:13] 2025-06-05 15:49:12,502 [wrapper] ==== wrapper stderr END ====
[2025-06-05 15:49:13]  *** Error codes and diagnostics ***
[2025-06-05 15:49:13]     "exeErrorCode": 0,
[2025-06-05 15:49:13]     "exeErrorDiag": "",
[2025-06-05 15:49:13]     "pilotErrorCode": 0,
[2025-06-05 15:49:13]     "pilotErrorDiag": "",
[2025-06-05 15:49:13]  *** Listing of results directory ***
[2025-06-05 15:49:13] total 402980
[2025-06-05 15:49:13] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-05 15:49:13] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:22 queuedata.json
[2025-06-05 15:49:13] -rwx------ 1 boinc boinc     37140 Jun  4 05:23 runpilot2-wrapper.sh
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc       100 Jun  5 12:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 15:49:13] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 12:42 run_atlas
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc       105 Jun  5 12:42 job.xml
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc      9357 Jun  5 12:43 init_data.xml
[2025-06-05 15:49:13] -rw-r--r-- 2 boinc boinc 216690560 Jun  5 12:43 EVNT.45006593._002135.pool.root.1
[2025-06-05 15:49:13] drwxrwx--x 2 boinc boinc      4096 Jun  5 12:43 shared
[2025-06-05 15:49:13] -rw-r--r-- 2 boinc boinc    508880 Jun  5 12:43 input.tar.gz
[2025-06-05 15:49:13] -rw-r--r-- 2 boinc boinc     15093 Jun  5 12:43 start_atlas.sh
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc         0 Jun  5 12:43 boinc_lockfile
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 12:43 pandaJob.out
[2025-06-05 15:49:13] -rw------- 1 boinc boinc    983210 Jun  5 12:44 agis_schedconf.cvmfs.json
[2025-06-05 15:49:13] drwx------ 4 boinc boinc      4096 Jun  5 12:44 pilot3
[2025-06-05 15:49:13] -rw------- 1 boinc boinc 189234907 Jun  5 15:46 HITS.45006595._053354.pool.root.1
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc       530 Jun  5 15:46 boinc_task_state.xml
[2025-06-05 15:49:13] -rw------- 1 boinc boinc      1020 Jun  5 15:47 memory_monitor_summary.json
[2025-06-05 15:49:13] -rw------- 1 boinc boinc   1598969 Jun  5 15:47 agis_ddmendpoints.agis.ALL.json
[2025-06-05 15:49:13] -rw------- 1 boinc boinc    426675 Jun  5 15:47 log.45006595._053354.job.log.tgz.1
[2025-06-05 15:49:13] -rw------- 1 boinc boinc        95 Jun  5 15:48 pilot_heartbeat.json
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 15:48 boinc_mmap_file
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc        28 Jun  5 15:48 wrapper_checkpoint.txt
[2025-06-05 15:49:13] -rw------- 1 boinc boinc      7661 Jun  5 15:48 heartbeat.json
[2025-06-05 15:49:13] -rw------- 1 boinc boinc      4956 Jun  5 15:49 pilotlog.txt
[2025-06-05 15:49:13] -rw------- 1 boinc boinc   1016423 Jun  5 15:49 log.45006595._053354.job.log.1
[2025-06-05 15:49:13] -rw------- 1 boinc boinc       357 Jun  5 15:49 output.list
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc       620 Jun  5 15:49 runtime_log
[2025-06-05 15:49:13] -rw------- 1 boinc boinc   1464320 Jun  5 15:49 result.tar.gz
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc      8949 Jun  5 15:49 runtime_log.err
[2025-06-05 15:49:13] -rw------- 1 boinc boinc       652 Jun  5 15:49 fEgKDmnlvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjNnKDmriADQm.diag
[2025-06-05 15:49:13] -rw-rw-r-- 1 boinc boinc     21597 Jun  5 15:49 stderr.txt
[2025-06-05 15:49:13] HITS file was successfully produced:
[2025-06-05 15:49:13] -rw------- 1 boinc boinc 189234907 Jun  5 15:46 shared/HITS.pool.root.1
[2025-06-05 15:49:13]  *** Contents of shared directory: ***
[2025-06-05 15:49:13] total 398368
[2025-06-05 15:49:13] -rw-r--r-- 2 boinc boinc 216690560 Jun  5 12:43 ATLAS.root_0
[2025-06-05 15:49:13] -rw-r--r-- 2 boinc boinc    508880 Jun  5 12:43 input.tar.gz
[2025-06-05 15:49:13] -rw-r--r-- 2 boinc boinc     15093 Jun  5 12:43 start_atlas.sh
[2025-06-05 15:49:13] -rw------- 1 boinc boinc 189234907 Jun  5 15:46 HITS.pool.root.1
[2025-06-05 15:49:13] -rw------- 1 boinc boinc   1464320 Jun  5 15:49 result.tar.gz
15:49:14 (1137995): run_atlas exited; CPU time 38967.796766
15:49:14 (1137995): called boinc_finish(0)

</stderr_txt>
]]>

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