Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:01:44 (48566): wrapper (7.7.26015): starting
07:01:44 (48566): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 07:01:44] Arguments: --nthreads 9
[2025-06-04 07:01:44] Threads: 9
[2025-06-04 07:01:44] Checking for CVMFS
[2025-06-04 07:01:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:01:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:01:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:01:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:01:45] 2.11.2.0 6636 28696 245440 146777 2 229 13100856 18432001 6777 130560 0 68184457 99.498 66403102 29060 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 07:01:45] CVMFS is ok
[2025-06-04 07:01:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:01:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:01:45] Further information can be found at the LHC@home message board.
[2025-06-04 07:01:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:01:45] Checking for apptainer binary...
[2025-06-04 07:01:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:01:45] Running /usr/bin/apptainer --version
[2025-06-04 07:01:45] apptainer version 1.3.2-1.el7
[2025-06-04 07:01:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:01:46] c-210-37-3.aglt2.org
[2025-06-04 07:01:46] apptainer works
[2025-06-04 07:01:46] Set ATHENA_PROC_NUMBER=9
[2025-06-04 07:01:46] Set ATHENA_CORE_NUMBER=9
[2025-06-04 07:01:46] Starting ATLAS job with PandaID=6678363309
[2025-06-04 07:01:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:14:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:14:21]  is_tar=False
[2025-06-04 08:14:21]  lfn=log.45006595._053349.job.log.tgz.1
[2025-06-04 08:14:21]  mtime=0
[2025-06-04 08:14:21]  protocol_id=None
[2025-06-04 08:14:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:14:21]  replicas=None
[2025-06-04 08:14:21]  scope=mc23_13p6TeV
[2025-06-04 08:14:21]  status=None
[2025-06-04 08:14:21]  status_code=0
[2025-06-04 08:14:21]  storage_token=
[2025-06-04 08:14:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678363309/log.45006595._053349.job.log.tgz.1
[2025-06-04 08:14:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/13/log.45006595._053349.job.log.tgz.1
[2025-06-04 08:14:21]  workdir=None
[2025-06-04 08:14:21] ]
[2025-06-04 08:14:21] 2025-06-04 12:14:02,291 | INFO     | transferring file log.45006595._053349.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678363309/log.45006595._053349.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:14:21] 2025-06-04 12:14:02,292 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678363309/log.45006595._053349.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._053349.job
[2025-06-04 08:14:21] 2025-06-04 12:14:02,318 | INFO     | adding to output.list: log.45006595._053349.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/13/log.45006595._053349.job.log.tg
[2025-06-04 08:14:21] 2025-06-04 12:14:02,319 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:14:21] 2025-06-04 12:14:02,320 | INFO     | summary of transferred files:
[2025-06-04 08:14:21] 2025-06-04 12:14:02,320 | INFO     |  -- lfn=log.45006595._053349.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:14:21] 2025-06-04 12:14:02,320 | INFO     | stage-out finished correctly
[2025-06-04 08:14:21] 2025-06-04 12:14:02,775 | WARNING  | process 58702 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 08:14:21] 2025-06-04 12:14:02,776 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678363309/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:14:21] 2025-06-04 12:14:02,875 | INFO     | PID=52160 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 08:14:21] 2025-06-04 12:14:02,875 | INFO     | .. there are 10 such processes running
[2025-06-04 08:14:21] 2025-06-04 12:14:03,021 | INFO     | number of running child processes to parent process 58702: 1
[2025-06-04 08:14:21] 2025-06-04 12:14:03,021 | INFO     | maximum number of monitored processes: 6
[2025-06-04 08:14:21] 2025-06-04 12:14:03,614 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:14:21] 2025-06-04 12:14:03,723 | INFO     | job 6678363309 has state=finished
[2025-06-04 08:14:21] 2025-06-04 12:14:03,723 | INFO     | preparing for final server update for job 6678363309 in state='finished'
[2025-06-04 08:14:21] 2025-06-04 12:14:03,724 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:14:21] 2025-06-04 12:14:03,724 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:14:21] 2025-06-04 12:14:03,724 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:14:21] 2025-06-04 12:14:03,724 | INFO     | job 6678363309 has finished - writing final server update
[2025-06-04 08:14:21] 2025-06-04 12:14:03,724 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:14:21] 2025-06-04 12:14:03,727 | INFO     | executing command: lscpu
[2025-06-04 08:14:21] 2025-06-04 12:14:03,780 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:14:21] 2025-06-04 12:14:05,524 | INFO     | monitor loop #325: job 0:6678363309 is in state 'finished'
[2025-06-04 08:14:21] 2025-06-04 12:14:05,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,025 | INFO     | monitor loop #326: job 0:6678363309 is in state 'finished'
[2025-06-04 08:14:21] 2025-06-04 12:14:08,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,266 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 08:14:21] 2025-06-04 12:14:08,267 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678363309/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,269 | INFO     | extracted standard info from prmon json
[2025-06-04 08:14:21] 2025-06-04 12:14:08,269 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:14:21] 2025-06-04 12:14:08,269 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:14:21] 2025-06-04 12:14:08,270 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:14:21] 2025-06-04 12:14:08,270 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:14:21] 2025-06-04 12:14:08,273 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:14:21] 2025-06-04 12:14:08,273 | INFO     | sum of square deviations: 81266640.0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,274 | INFO     | sum of deviations: 805586252.0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,274 | INFO     | mean x: 1749037172.5
[2025-06-04 08:14:21] 2025-06-04 12:14:08,274 | INFO     | mean y: 2519691.0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,274 | INFO     | -- intersect: -17335471647.17951
[2025-06-04 08:14:21] 2025-06-04 12:14:08,275 | INFO     | intersect: -17335471647.17951
[2025-06-04 08:14:21] 2025-06-04 12:14:08,275 | INFO     | chi2: 0.0025255689784361335
[2025-06-04 08:14:21] 2025-06-04 12:14:08,275 | INFO     | -- intersect: -17335471647.17951
[2025-06-04 08:14:21] 2025-06-04 12:14:08,275 | INFO     | current memory leak: 9.91 B/s (using 64 data points, chi2=0.00)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,275 | INFO     | ..............................
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . Timing measurements:
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . get job = 0 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . initial setup = 2 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . payload setup = 7 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . stage-in = 0 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . payload execution = 4296 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . stage-out = 0 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | . log creation = 0 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,276 | INFO     | ..............................
[2025-06-04 08:14:21] 2025-06-04 12:14:08,808 | INFO     | 
[2025-06-04 08:14:21] 2025-06-04 12:14:08,808 | INFO     | job summary report
[2025-06-04 08:14:21] 2025-06-04 12:14:08,808 | INFO     | --------------------------------------------------
[2025-06-04 08:14:21] 2025-06-04 12:14:08,808 | INFO     | PanDA job id: 6678363309
[2025-06-04 08:14:21] 2025-06-04 12:14:08,808 | INFO     | task id: 45006595
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | errors: (none)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | pilot state: finished 
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | transexitcode: 0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | exeerrorcode: 0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | exeerrordiag: 
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | exitcode: 0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | exitmsg: OK
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | cpuconsumptiontime: 31562 s
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | nevents: 400
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | neventsw: 0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,809 | INFO     | pid: 58702
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | pgrp: 58702
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | corecount: 9
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | event service: False
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | sizes: {0: 2405013, 1: 2405212, 5: 2405418, 11: 2405474, 4307: 2431387, 4308: 2440328, 4310: 2440512, 4314: 2440682}
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | --------------------------------------------------
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | 
[2025-06-04 08:14:21] 2025-06-04 12:14:08,810 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:14:21] 2025-06-04 12:14:08,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,832 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | job 6678363309 has completed (purged errors)
[2025-06-04 08:14:21] 2025-06-04 12:14:08,833 | INFO     | overall cleanup function is called
[2025-06-04 08:14:21] 2025-06-04 12:14:09,840 | INFO     | --- collectZombieJob: --- 10, [58702]
[2025-06-04 08:14:21] 2025-06-04 12:14:09,840 | INFO     | zombie collector waiting for pid 58702
[2025-06-04 08:14:21] 2025-06-04 12:14:09,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:14:21] 2025-06-04 12:14:09,840 | INFO     | collected zombie processes
[2025-06-04 08:14:21] 2025-06-04 12:14:09,840 | INFO     | will attempt to kill all subprocesses of pid=58702
[2025-06-04 08:14:21] 2025-06-04 12:14:09,993 | INFO     | process IDs to be killed: [58702] (in reverse order)
[2025-06-04 08:14:21] 2025-06-04 12:14:10,059 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:14:21] 2025-06-04 12:14:10,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:14:21] 2025-06-04 12:14:10,066 | INFO     | did not find any defunct processes belonging to 58702
[2025-06-04 08:14:21] 2025-06-04 12:14:10,072 | INFO     | did not find any defunct processes belonging to 58702
[2025-06-04 08:14:21] 2025-06-04 12:14:10,073 | INFO     | ready for new job
[2025-06-04 08:14:21] 2025-06-04 12:14:10,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:14:21] 2025-06-04 12:14:10,074 | INFO     | **************************************
[2025-06-04 08:14:21] 2025-06-04 12:14:10,074 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:14:21] 2025-06-04 12:14:10,074 | INFO     | **************************************
[2025-06-04 08:14:21] 2025-06-04 12:14:10,075 | INFO     | 
[2025-06-04 08:14:21] 2025-06-04 12:14:10,078 | INFO     | architecture information:
[2025-06-04 08:14:21] 2025-06-04 12:14:10,078 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:14:21] 2025-06-04 12:14:10,096 | INFO     | cat /etc/os-release:
[2025-06-04 08:14:21] NAME="CentOS Linux"
[2025-06-04 08:14:21] VERSION="7 (Core)"
[2025-06-04 08:14:21] ID="centos"
[2025-06-04 08:14:21] ID_LIKE="rhel fedora"
[2025-06-04 08:14:21] VERSION_ID="7"
[2025-06-04 08:14:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:14:21] ANSI_COLOR="0;31"
[2025-06-04 08:14:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:14:21] HOME_URL="https://www.centos.org/"
[2025-06-04 08:14:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:14:21] 
[2025-06-04 08:14:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:14:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:14:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:14:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:14:21] 
[2025-06-04 08:14:21] 2025-06-04 12:14:10,097 | INFO     | **************************************
[2025-06-04 08:14:21] 2025-06-04 12:14:10,600 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:14:21] 2025-06-04 12:14:10,621 | INFO     | sufficient remaining disk space (56342085632 B)
[2025-06-04 08:14:21] 2025-06-04 12:14:10,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:14:21] 2025-06-04 12:14:10,621 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:14:21] 2025-06-04 12:14:10,621 | INFO     | update_server=False
[2025-06-04 08:14:21] 2025-06-04 12:14:10,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:14:21] 2025-06-04 12:14:10,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:14:21] 2025-06-04 12:14:10,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:14:21] 2025-06-04 12:14:10,651 | INFO     | all payload control threads have been joined
[2025-06-04 08:14:21] 2025-06-04 12:14:10,901 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:14:21] 2025-06-04 12:14:10,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:14:21] 2025-06-04 12:14:10,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:14:21] 2025-06-04 12:14:11,249 | INFO     | all job control threads have been joined
[2025-06-04 08:14:21] 2025-06-04 12:14:11,452 | INFO     | all data control threads have been joined
[2025-06-04 08:14:21] 2025-06-04 12:14:11,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:14:21] 2025-06-04 12:14:11,531 | INFO     | aborting loop
[2025-06-04 08:14:21] 2025-06-04 12:14:11,624 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:11,654 | INFO     | [payload] control thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:11,813 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:11,814 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:11,867 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:11,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,129 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,255 | INFO     | [job] control thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,458 | INFO     | [data] control thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,479 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,536 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,622 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,680 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:12,984 | INFO     | [job] validate thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:13,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:14:21] 2025-06-04 12:14:14,341 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:14,625 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:14:21] 2025-06-04 12:14:15,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705223571264)>', '<ExcThread(monitor, started 139704783582976)>']
[2025-06-04 08:14:21] 2025-06-04 12:14:15,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:14:21] 2025-06-04 12:14:15,923 | INFO     | [monitor] control thread has ended
[2025-06-04 08:14:21] 2025-06-04 12:14:20,655 | INFO     | all workflow threads have been joined
[2025-06-04 08:14:21] 2025-06-04 12:14:20,655 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:14:21] 2025-06-04 12:14:20,656 | INFO     | traces error code: 0
[2025-06-04 08:14:21] 2025-06-04 12:14:20,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:14:21] 2025-06-04 12:14:20,806 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:14:21] 2025-06-04 12:14:20,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:14:21] 2025-06-04 12:14:20,814 [wrapper] pilotpid: 52160
[2025-06-04 08:14:21] 2025-06-04 12:14:20,817 [wrapper] Pilot exit status: 0
[2025-06-04 08:14:21] 2025-06-04 12:14:20,829 [wrapper] pandaids: 6678363309
[2025-06-04 08:14:21] 2025-06-04 12:14:20,875 [wrapper] cleanup supervisor_pilot 152919 52161
[2025-06-04 08:14:21] 2025-06-04 12:14:20,878 [wrapper] Test setup, not cleaning
[2025-06-04 08:14:21] 2025-06-04 12:14:20,881 [wrapper] apfmon messages muted
[2025-06-04 08:14:21] 2025-06-04 12:14:20,883 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:14:21] 2025-06-04 12:14:20,886 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:14:21]  *** Error codes and diagnostics ***
[2025-06-04 08:14:21]     "exeErrorCode": 0,
[2025-06-04 08:14:21]     "exeErrorDiag": "",
[2025-06-04 08:14:21]     "pilotErrorCode": 0,
[2025-06-04 08:14:21]     "pilotErrorDiag": "",
[2025-06-04 08:14:21]  *** Listing of results directory ***
[2025-06-04 08:14:21] total 386352
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 00:58 pilot3.tar.gz
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 01:22 queuedata.json
[2025-06-04 08:14:21] -rwx------ 1 boincer umatlas     37140 Jun  4 01:23 runpilot2-wrapper.sh
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas       100 Jun  4 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:14:21] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 07:01 run_atlas
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas       105 Jun  4 07:01 job.xml
[2025-06-04 08:14:21] -rw-r--r-- 2 boincer umatlas 216690560 Jun  4 07:01 EVNT.45006593._002135.pool.root.1
[2025-06-04 08:14:21] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:01 start_atlas.sh
[2025-06-04 08:14:21] drwxrwx--x 2 boincer umatlas      4096 Jun  4 07:01 shared
[2025-06-04 08:14:21] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 07:01 input.tar.gz
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas         0 Jun  4 07:01 boinc_lockfile
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 07:01 pandaJob.out
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas    986812 Jun  4 07:01 agis_schedconf.cvmfs.json
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas   1603667 Jun  4 07:01 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:14:21] drwx------ 4 boincer umatlas      4096 Jun  4 07:01 pilot3
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas      6354 Jun  4 08:10 init_data.xml
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas       529 Jun  4 08:13 boinc_task_state.xml
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas 173601895 Jun  4 08:13 HITS.45006595._053349.pool.root.1
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas        95 Jun  4 08:13 pilot_heartbeat.json
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas      1058 Jun  4 08:13 memory_monitor_summary.json
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas    318791 Jun  4 08:14 log.45006595._053349.job.log.tgz.1
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas      7735 Jun  4 08:14 heartbeat.json
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 08:14 boinc_mmap_file
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas        27 Jun  4 08:14 wrapper_checkpoint.txt
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas      4353 Jun  4 08:14 pilotlog.txt
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas    431277 Jun  4 08:14 log.45006595._053349.job.log.1
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas       357 Jun  4 08:14 output.list
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas       620 Jun  4 08:14 runtime_log
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas    768000 Jun  4 08:14 result.tar.gz
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 08:14 runtime_log.err
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas       658 Jun  4 08:14 2pYKDmnlvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeNnKDmnl1lxn.diag
[2025-06-04 08:14:21] -rw-r--r-- 1 boincer umatlas     21559 Jun  4 08:14 stderr.txt
[2025-06-04 08:14:21] HITS file was successfully produced:
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas 173601895 Jun  4 08:13 shared/HITS.pool.root.1
[2025-06-04 08:14:21]  *** Contents of shared directory: ***
[2025-06-04 08:14:21] total 382420
[2025-06-04 08:14:21] -rw-r--r-- 2 boincer umatlas 216690560 Jun  4 07:01 ATLAS.root_0
[2025-06-04 08:14:21] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:01 start_atlas.sh
[2025-06-04 08:14:21] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 07:01 input.tar.gz
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas 173601895 Jun  4 08:13 HITS.pool.root.1
[2025-06-04 08:14:21] -rw------- 1 boincer umatlas    768000 Jun  4 08:14 result.tar.gz
08:14:22 (48566): run_atlas exited; CPU time 31619.734296
08:14:22 (48566): called boinc_finish(0)

</stderr_txt>
]]>

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