Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:19:47 (1410228): wrapper (7.7.26015): starting
12:19:47 (1410228): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 12:19:47] Arguments: --nthreads 12
[2025-06-04 12:19:47] Threads: 12
[2025-06-04 12:19:47] Checking for CVMFS
[2025-06-04 12:19:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:19:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:19:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:19:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:19:48] 2.12.7.0 29207 1900 76904 146780 2 187 1970936 4096001 14330 130560 17 25012034 99.999 472380 149 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 12:19:48] CVMFS is ok
[2025-06-04 12:19:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 12:19:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 12:19:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 12:19:48] Further information can be found at the LHC@home message board.
[2025-06-04 12:19:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:19:48] Checking for apptainer binary...
[2025-06-04 12:19:48] apptainer is not installed, using version from CVMFS
[2025-06-04 12:19:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:19:48] epyc7v12
[2025-06-04 12:19:48] apptainer works
[2025-06-04 12:19:48] Set ATHENA_PROC_NUMBER=12
[2025-06-04 12:19:48] Set ATHENA_CORE_NUMBER=12
[2025-06-04 12:19:48] Starting ATLAS job with PandaID=6677468971
[2025-06-04 12:19:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:03:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:03:49] 2025-06-04 14:03:28,041 | INFO     | sum of square deviations: 282970216.9896903
[2025-06-04 14:03:49] 2025-06-04 14:03:28,041 | INFO     | sum of deviations: 18903638907.402065
[2025-06-04 14:03:49] 2025-06-04 14:03:28,041 | INFO     | mean x: 1749042556.0103092
[2025-06-04 14:03:49] 2025-06-04 14:03:28,041 | INFO     | mean y: 2583354.597938144
[2025-06-04 14:03:49] 2025-06-04 14:03:28,041 | INFO     | -- intersect: -116841052220.31863
[2025-06-04 14:03:49] 2025-06-04 14:03:28,042 | INFO     | intersect: -116841052220.31863
[2025-06-04 14:03:49] 2025-06-04 14:03:28,042 | INFO     | chi2: 1.67982635224428
[2025-06-04 14:03:49] 2025-06-04 14:03:28,042 | INFO     | current chi2=1.67982635224428 (change=33.0585486655866 %)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,042 | INFO     | sum of square deviations: 241425556.9891305
[2025-06-04 14:03:49] 2025-06-04 14:03:28,042 | INFO     | sum of deviations: 17810996678.010868
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | mean x: 1749042403.5108695
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | mean y: 2579340.4891304346
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | -- intersect: -129031764939.94998
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | intersect: -129031764939.94998
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | chi2: 1.6817479918917735
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | current chi2=1.6817479918917735 (change=-0.11439513643336592 %)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,043 | INFO     | right removable region: 91
[2025-06-04 14:03:49] 2025-06-04 14:03:28,044 | INFO     | sum of square deviations: 282969606.9896903
[2025-06-04 14:03:49] 2025-06-04 14:03:28,044 | INFO     | sum of deviations: -6533179685.515464
[2025-06-04 14:03:49] 2025-06-04 14:03:28,044 | INFO     | mean x: 1749042861.0103092
[2025-06-04 14:03:49] 2025-06-04 14:03:28,044 | INFO     | mean y: 2625207.5154639175
[2025-06-04 14:03:49] 2025-06-04 14:03:28,044 | INFO     | -- intersect: 40384387087.20992
[2025-06-04 14:03:49] 2025-06-04 14:03:28,044 | INFO     | intersect: 40384387087.20992
[2025-06-04 14:03:49] 2025-06-04 14:03:28,045 | INFO     | chi2: 0.8775714879614913
[2025-06-04 14:03:49] 2025-06-04 14:03:28,045 | INFO     | current chi2=0.8775714879614913 (change=65.02858228449787 %)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,045 | INFO     | sum of square deviations: 241424336.9891305
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | sum of deviations: -7097740151.902173
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | mean x: 1749043013.5108695
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | mean y: 2627227.402173913
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | -- intersect: 51423511216.23961
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | intersect: 51423511216.23961
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | chi2: 0.8751204481168833
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | current chi2=0.8751204481168833 (change=0.2792980262270773 %)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,046 | INFO     | left removable region: 20
[2025-06-04 14:03:49] 2025-06-04 14:03:28,047 | INFO     | sum of square deviations: 110960220.0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,047 | INFO     | sum of deviations: -551924950.0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,047 | INFO     | mean x: 1749042983.0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,047 | INFO     | mean y: 2653610.9577464787
[2025-06-04 14:03:49] 2025-06-04 14:03:28,047 | INFO     | -- intersect: 8702532368.769562
[2025-06-04 14:03:49] 2025-06-04 14:03:28,047 | INFO     | intersect: 8702532368.769562
[2025-06-04 14:03:49] 2025-06-04 14:03:28,048 | INFO     | chi2: 0.0007922228592424787
[2025-06-04 14:03:49] 2025-06-04 14:03:28,048 | INFO     | -- intersect: 8702532368.769562
[2025-06-04 14:03:49] 2025-06-04 14:03:28,048 | INFO     | current memory leak: -4.97 B/s (using 71 data points, chi2=0.00)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,048 | INFO     | ..............................
[2025-06-04 14:03:49] 2025-06-04 14:03:28,048 | INFO     | . Timing measurements:
[2025-06-04 14:03:49] 2025-06-04 14:03:28,048 | INFO     | . get job = 0 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | . initial setup = 1 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | . payload setup = 7 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | . stage-in = 0 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | . payload execution = 6173 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | . stage-out = 0 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | . log creation = 0 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,049 | INFO     | ..............................
[2025-06-04 14:03:49] 2025-06-04 14:03:28,101 | INFO     | sufficient remaining disk space (314354696192 B)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,102 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,129 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31417/slots/18/PanDA_Pilot-6677468971: 4343912 B (within 2537553920 B limit)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,129 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31417/slots/18/PanDA_Pilot-6677468971/HITS.45006595._019763.pool.root.1 does not exist (skip from workdir size calculation
[2025-06-04 14:03:49] 2025-06-04 14:03:28,129 | INFO     | total size of present files: 0 B (workdir size: 4343912 B)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,129 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/18/PanDA_Pilot-6677468971/HITS.45006595._019763.pool.root.1 since it does 
[2025-06-04 14:03:49] 2025-06-04 14:03:28,177 | INFO     | 
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | job summary report
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | --------------------------------------------------
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | PanDA job id: 6677468971
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | task id: 45006595
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | errors: (none)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | pilot state: finished 
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | transexitcode: 0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | exeerrorcode: 0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,178 | INFO     | exeerrordiag: 
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | exitcode: 0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | exitmsg: OK
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | cpuconsumptiontime: 39428 s
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | nevents: 400
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | neventsw: 0
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | pid: 1434159
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | pgrp: 1434159
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | corecount: 12
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | event service: False
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | sizes: {0: 2397193, 1: 2397392, 6: 2397598, 11: 2397626, 6184: 2424589, 6185: 2433578, 6187: 2433762, 6193: 2433960}
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | --------------------------------------------------
[2025-06-04 14:03:49] 2025-06-04 14:03:28,179 | INFO     | 
[2025-06-04 14:03:49] 2025-06-04 14:03:28,180 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/18
[2025-06-04 14:03:49] 2025-06-04 14:03:28,206 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,206 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,206 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,206 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,206 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,207 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | job 6677468971 has completed (purged errors)
[2025-06-04 14:03:49] 2025-06-04 14:03:28,208 | INFO     | overall cleanup function is called
[2025-06-04 14:03:49] 2025-06-04 14:03:28,742 | INFO     | number of running child processes to parent process 1434159: 1
[2025-06-04 14:03:49] 2025-06-04 14:03:28,742 | INFO     | maximum number of monitored processes: 6
[2025-06-04 14:03:49] 2025-06-04 14:03:28,742 | INFO     | aborting job monitoring since job object (job id=6677468971) has expired
[2025-06-04 14:03:49] 2025-06-04 14:03:29,229 | INFO     | --- collectZombieJob: --- 10, [1434159]
[2025-06-04 14:03:49] 2025-06-04 14:03:29,230 | INFO     | zombie collector waiting for pid 1434159
[2025-06-04 14:03:49] 2025-06-04 14:03:29,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:03:49] 2025-06-04 14:03:29,230 | INFO     | collected zombie processes
[2025-06-04 14:03:49] 2025-06-04 14:03:29,230 | INFO     | will attempt to kill all subprocesses of pid=1434159
[2025-06-04 14:03:49] 2025-06-04 14:03:29,939 | INFO     | process IDs to be killed: [1434159] (in reverse order)
[2025-06-04 14:03:49] 2025-06-04 14:03:30,144 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:03:49] 2025-06-04 14:03:30,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:03:49] 2025-06-04 14:03:30,178 | INFO     | did not find any defunct processes belonging to 1434159
[2025-06-04 14:03:49] 2025-06-04 14:03:30,212 | INFO     | did not find any defunct processes belonging to 1434159
[2025-06-04 14:03:49] 2025-06-04 14:03:30,212 | INFO     | ready for new job
[2025-06-04 14:03:49] 2025-06-04 14:03:30,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:03:49] 2025-06-04 14:03:30,214 | INFO     | **************************************
[2025-06-04 14:03:49] 2025-06-04 14:03:30,214 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:03:49] 2025-06-04 14:03:30,215 | INFO     | **************************************
[2025-06-04 14:03:49] 2025-06-04 14:03:30,215 | INFO     | 
[2025-06-04 14:03:49] 2025-06-04 14:03:30,226 | INFO     | architecture information:
[2025-06-04 14:03:49] 2025-06-04 14:03:30,226 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:03:49] 2025-06-04 14:03:30,247 | INFO     | cat /etc/os-release:
[2025-06-04 14:03:49] NAME="CentOS Linux"
[2025-06-04 14:03:49] VERSION="7 (Core)"
[2025-06-04 14:03:49] ID="centos"
[2025-06-04 14:03:49] ID_LIKE="rhel fedora"
[2025-06-04 14:03:49] VERSION_ID="7"
[2025-06-04 14:03:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:03:49] ANSI_COLOR="0;31"
[2025-06-04 14:03:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:03:49] HOME_URL="https://www.centos.org/"
[2025-06-04 14:03:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:03:49] 
[2025-06-04 14:03:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:03:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:03:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:03:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:03:49] 
[2025-06-04 14:03:49] 2025-06-04 14:03:30,247 | INFO     | **************************************
[2025-06-04 14:03:49] 2025-06-04 14:03:30,544 | INFO     | PID=1416137 has CPU usage=22.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 14:03:49] 2025-06-04 14:03:30,544 | INFO     | .. there are 20 such processes running
[2025-06-04 14:03:49] 2025-06-04 14:03:30,750 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/18
[2025-06-04 14:03:49] 2025-06-04 14:03:30,772 | INFO     | sufficient remaining disk space (314355744768 B)
[2025-06-04 14:03:49] 2025-06-04 14:03:30,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:03:49] 2025-06-04 14:03:30,772 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:03:49] 2025-06-04 14:03:30,773 | INFO     | update_server=False
[2025-06-04 14:03:49] 2025-06-04 14:03:30,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:03:49] 2025-06-04 14:03:30,773 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 14:03:49] 2025-06-04 14:03:30,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:03:49] 2025-06-04 14:03:30,774 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:03:49] 2025-06-04 14:03:30,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:03:49] 2025-06-04 14:03:30,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:03:49] 2025-06-04 14:03:30,937 | INFO     | all job control threads have been joined
[2025-06-04 14:03:49] 2025-06-04 14:03:31,245 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 14:03:49] 2025-06-04 14:03:31,245 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 14:03:49] 2025-06-04 14:03:31,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:03:49] 2025-06-04 14:03:31,246 | INFO     | will abort loop
[2025-06-04 14:03:49] 2025-06-04 14:03:31,360 | INFO     | all payload control threads have been joined
[2025-06-04 14:03:49] 2025-06-04 14:03:31,733 | INFO     | all data control threads have been joined
[2025-06-04 14:03:49] 2025-06-04 14:03:31,778 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:31,798 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:31,942 | INFO     | [job] control thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,178 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,250 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,366 | INFO     | [payload] control thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,421 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,505 | INFO     | [job] validate thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,737 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,738 | INFO     | [data] control thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,777 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:32,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:03:49] 2025-06-04 14:03:33,073 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:33,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:03:49] 2025-06-04 14:03:33,234 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:34,193 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:36,877 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:41,829 | INFO     | job.realtimelogging is not enabled
[2025-06-04 14:03:49] 2025-06-04 14:03:42,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:03:49] 2025-06-04 14:03:44,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139658235623232)>', '<ExcThread(monitor, started 139657497011968)>']
[2025-06-04 14:03:49] 2025-06-04 14:03:44,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:03:49] 2025-06-04 14:03:44,834 | INFO     | [monitor] control thread has ended
[2025-06-04 14:03:49] 2025-06-04 14:03:49,049 | INFO     | all workflow threads have been joined
[2025-06-04 14:03:49] 2025-06-04 14:03:49,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:03:49] 2025-06-04 14:03:49,050 | INFO     | traces error code: 0
[2025-06-04 14:03:49] 2025-06-04 14:03:49,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:03:49] 2025-06-04 14:03:49,204 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:03:49] 2025-06-04 14:03:49,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:03:49] 2025-06-04 14:03:49,211 [wrapper] pilotpid: 1416137
[2025-06-04 14:03:49] 2025-06-04 14:03:49,215 [wrapper] Pilot exit status: 0
[2025-06-04 14:03:49] 2025-06-04 14:03:49,227 [wrapper] pandaids: 6677468971
[2025-06-04 14:03:49] 2025-06-04 14:03:49,348 [wrapper] cleanup supervisor_pilot 1673074 1416138
[2025-06-04 14:03:49] 2025-06-04 14:03:49,353 [wrapper] Test setup, not cleaning
[2025-06-04 14:03:49] 2025-06-04 14:03:49,357 [wrapper] apfmon messages muted
[2025-06-04 14:03:49] 2025-06-04 14:03:49,361 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:03:49] 2025-06-04 14:03:49,365 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:03:49]  *** Error codes and diagnostics ***
[2025-06-04 14:03:49]     "exeErrorCode": 0,
[2025-06-04 14:03:49]     "exeErrorDiag": "",
[2025-06-04 14:03:49]     "pilotErrorCode": 0,
[2025-06-04 14:03:49]     "pilotErrorDiag": "",
[2025-06-04 14:03:49]  *** Listing of results directory ***
[2025-06-04 14:03:49] total 385068
[2025-06-04 14:03:49] -rw-r--r-- 1 boinc boinc    495897 Jun  3 04:37 pilot3.tar.gz
[2025-06-04 14:03:49] -rw-r--r-- 1 boinc boinc      5111 Jun  3 04:48 queuedata.json
[2025-06-04 14:03:49] -rwx------ 1 boinc boinc     37140 Jun  3 04:48 runpilot2-wrapper.sh
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc       100 Jun  4 12:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:03:49] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 12:19 run_atlas
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc       105 Jun  4 12:19 job.xml
[2025-06-04 14:03:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 12:19 start_atlas.sh
[2025-06-04 14:03:49] drwxrwx--x 2 boinc boinc      4096 Jun  4 12:19 shared
[2025-06-04 14:03:49] -rw-r--r-- 2 boinc boinc    508881 Jun  4 12:19 input.tar.gz
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc      6951 Jun  4 12:19 init_data.xml
[2025-06-04 14:03:49] -rw-r--r-- 2 boinc boinc 216240512 Jun  4 12:19 EVNT.45006593._000791.pool.root.1
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc         0 Jun  4 12:19 boinc_lockfile
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc      2524 Jun  4 12:19 pandaJob.out
[2025-06-04 14:03:49] -rw------- 1 boinc boinc    986811 Jun  4 12:19 agis_schedconf.cvmfs.json
[2025-06-04 14:03:49] -rw------- 1 boinc boinc   1598969 Jun  4 12:19 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:03:49] drwx------ 4 boinc boinc      4096 Jun  4 12:19 pilot3
[2025-06-04 14:03:49] -rw------- 1 boinc boinc 172349524 Jun  4 14:02 HITS.45006595._019763.pool.root.1
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc       530 Jun  4 14:02 boinc_task_state.xml
[2025-06-04 14:03:49] -rw------- 1 boinc boinc        95 Jun  4 14:03 pilot_heartbeat.json
[2025-06-04 14:03:49] -rw------- 1 boinc boinc      1022 Jun  4 14:03 memory_monitor_summary.json
[2025-06-04 14:03:49] -rw------- 1 boinc boinc    371945 Jun  4 14:03 log.45006595._019763.job.log.tgz.1
[2025-06-04 14:03:49] -rw------- 1 boinc boinc      7644 Jun  4 14:03 heartbeat.json
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 14:03 boinc_mmap_file
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc        27 Jun  4 14:03 wrapper_checkpoint.txt
[2025-06-04 14:03:49] -rw------- 1 boinc boinc      5155 Jun  4 14:03 pilotlog.txt
[2025-06-04 14:03:49] -rw------- 1 boinc boinc    572329 Jun  4 14:03 log.45006595._019763.job.log.1
[2025-06-04 14:03:49] -rw------- 1 boinc boinc       357 Jun  4 14:03 output.list
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc       620 Jun  4 14:03 runtime_log
[2025-06-04 14:03:49] -rw------- 1 boinc boinc    962560 Jun  4 14:03 result.tar.gz
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc      8977 Jun  4 14:03 runtime_log.err
[2025-06-04 14:03:49] -rw------- 1 boinc boinc       651 Jun  4 14:03 oqrLDmLkYg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm90hKDmfrHBLm.diag
[2025-06-04 14:03:49] -rw-rw-r-- 1 boinc boinc     21694 Jun  4 14:03 stderr.txt
[2025-06-04 14:03:49] HITS file was successfully produced:
[2025-06-04 14:03:49] -rw------- 1 boinc boinc 172349524 Jun  4 14:02 shared/HITS.pool.root.1
[2025-06-04 14:03:49]  *** Contents of shared directory: ***
[2025-06-04 14:03:49] total 380952
[2025-06-04 14:03:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 12:19 start_atlas.sh
[2025-06-04 14:03:49] -rw-r--r-- 2 boinc boinc    508881 Jun  4 12:19 input.tar.gz
[2025-06-04 14:03:49] -rw-r--r-- 2 boinc boinc 216240512 Jun  4 12:19 ATLAS.root_0
[2025-06-04 14:03:49] -rw------- 1 boinc boinc 172349524 Jun  4 14:02 HITS.pool.root.1
[2025-06-04 14:03:49] -rw------- 1 boinc boinc    962560 Jun  4 14:03 result.tar.gz
14:03:51 (1410228): run_atlas exited; CPU time 39742.061617
14:03:51 (1410228): called boinc_finish(0)

</stderr_txt>
]]>

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