Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
22:40:49 (1349269): wrapper (7.7.26015): starting
22:40:49 (1349269): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 22:40:49] Arguments: --nthreads 12
[2025-06-05 22:40:49] Threads: 12
[2025-06-05 22:40:49] Checking for CVMFS
[2025-06-05 22:40:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 22:40:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 22:40:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 22:40:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 22:40:53] 2.12.7.0 16016 3794 62792 146835 2 56 2604760 4096001 912 130560 0 3609048 99.992 943772 141 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 22:40:53] CVMFS is ok
[2025-06-05 22:40:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 22:40:53] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 22:40:53] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 22:40:53] Further information can be found at the LHC@home message board.
[2025-06-05 22:40:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 22:40:53] Checking for apptainer binary...
[2025-06-05 22:40:53] apptainer is not installed, using version from CVMFS
[2025-06-05 22:40:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 22:40:55] g3250
[2025-06-05 22:40:55] apptainer works
[2025-06-05 22:40:55] Set ATHENA_PROC_NUMBER=12
[2025-06-05 22:40:55] Set ATHENA_CORE_NUMBER=12
[2025-06-05 22:40:55] Starting ATLAS job with PandaID=6678363755
[2025-06-05 22:40:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 01:33:56]  *** The last 200 lines of the pilot log: ***
[2025-06-06 01:33:56] 2025-06-06 01:33:34,240 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 01:33:56] 2025-06-06 01:33:34,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 01:33:56] 2025-06-06 01:33:34,240 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 01:33:56] 2025-06-06 01:33:34,240 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 01:33:56] 2025-06-06 01:33:34,243 | INFO     | fitting pss+swap vs Time
[2025-06-06 01:33:56] 2025-06-06 01:33:34,243 | INFO     | sum of square deviations: 1392881930.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,244 | INFO     | sum of deviations: 12093647476.000015
[2025-06-06 01:33:56] 2025-06-06 01:33:34,244 | INFO     | mean x: 1749168471.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,244 | INFO     | mean y: 2676593.7454545456
[2025-06-06 01:33:56] 2025-06-06 01:33:34,244 | INFO     | -- intersect: -15184416015.322966
[2025-06-06 01:33:56] 2025-06-06 01:33:34,245 | INFO     | intersect: -15184416015.322966
[2025-06-06 01:33:56] 2025-06-06 01:33:34,245 | INFO     | chi2: 2.507942211233872
[2025-06-06 01:33:56] 2025-06-06 01:33:34,245 | INFO     | sum of square deviations: 1270051720.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,246 | INFO     | sum of deviations: 11501559271.999996
[2025-06-06 01:33:56] 2025-06-06 01:33:34,246 | INFO     | mean x: 1749168318.5
[2025-06-06 01:33:56] 2025-06-06 01:33:34,246 | INFO     | mean y: 2675868.1
[2025-06-06 01:33:56] 2025-06-06 01:33:34,246 | INFO     | -- intersect: -15837752340.549894
[2025-06-06 01:33:56] 2025-06-06 01:33:34,246 | INFO     | intersect: -15837752340.549894
[2025-06-06 01:33:56] 2025-06-06 01:33:34,255 | INFO     | chi2: 2.5092675365692494
[2025-06-06 01:33:56] 2025-06-06 01:33:34,255 | INFO     | current chi2=2.5092675365692494 (change=-0.052845130539323076 %)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,255 | INFO     | right removable region: 159
[2025-06-06 01:33:56] 2025-06-06 01:33:34,255 | INFO     | sum of square deviations: 1270051720.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,256 | INFO     | sum of deviations: -25434639879.500004
[2025-06-06 01:33:56] 2025-06-06 01:33:34,256 | INFO     | mean x: 1749168623.5
[2025-06-06 01:33:56] 2025-06-06 01:33:34,256 | INFO     | mean y: 2722785.36875
[2025-06-06 01:33:56] 2025-06-06 01:33:34,256 | INFO     | -- intersect: 35032378134.5566
[2025-06-06 01:33:56] 2025-06-06 01:33:34,256 | INFO     | intersect: 35032378134.5566
[2025-06-06 01:33:56] 2025-06-06 01:33:34,257 | INFO     | chi2: 0.3402347641777331
[2025-06-06 01:33:56] 2025-06-06 01:33:34,257 | INFO     | current chi2=0.3402347641777331 (change=86.43370797565775 %)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,257 | INFO     | sum of square deviations: 1154663510.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,258 | INFO     | sum of deviations: -29807115579.000004
[2025-06-06 01:33:56] 2025-06-06 01:33:34,258 | INFO     | mean x: 1749168776.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,258 | INFO     | mean y: 2728440.922580645
[2025-06-06 01:33:56] 2025-06-06 01:33:34,258 | INFO     | -- intersect: 45156728218.2343
[2025-06-06 01:33:56] 2025-06-06 01:33:34,258 | INFO     | intersect: 45156728218.2343
[2025-06-06 01:33:56] 2025-06-06 01:33:34,258 | INFO     | chi2: 0.2496425736095624
[2025-06-06 01:33:56] 2025-06-06 01:33:34,259 | INFO     | current chi2=0.2496425736095624 (change=26.626376874541478 %)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,259 | INFO     | sum of square deviations: 1046484737.5
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | sum of deviations: -23095446924.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | mean x: 1749168928.5
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | mean y: 2718965.32
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | -- intersect: 38606089565.63103
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | intersect: 38606089565.63103
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | chi2: 0.2314279199141897
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | current chi2=0.2314279199141897 (change=7.29629302887262 %)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,260 | INFO     | left removable region: 30
[2025-06-06 01:33:56] 2025-06-06 01:33:34,261 | INFO     | sum of square deviations: 665612480.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,261 | INFO     | sum of deviations: 843685815.0000001
[2025-06-06 01:33:56] 2025-06-06 01:33:34,261 | INFO     | mean x: 1749169203.0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,262 | INFO     | mean y: 2678531.1317829457
[2025-06-06 01:33:56] 2025-06-06 01:33:34,262 | INFO     | -- intersect: -2214451238.7396526
[2025-06-06 01:33:56] 2025-06-06 01:33:34,262 | INFO     | intersect: -2214451238.7396526
[2025-06-06 01:33:56] 2025-06-06 01:33:34,262 | INFO     | chi2: 0.02543611943537965
[2025-06-06 01:33:56] 2025-06-06 01:33:34,262 | INFO     | -- intersect: -2214451238.7396526
[2025-06-06 01:33:56] 2025-06-06 01:33:34,262 | INFO     | current memory leak: 1.27 B/s (using 129 data points, chi2=0.03)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | ..............................
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . Timing measurements:
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . get job = 0 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . initial setup = 4 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . payload setup = 55 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . stage-in = 0 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . payload execution = 10090 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,271 | INFO     | . stage-out = 1 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,272 | INFO     | . log creation = 0 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,272 | INFO     | ..............................
[2025-06-06 01:33:56] 2025-06-06 01:33:34,444 | INFO     | 
[2025-06-06 01:33:56] 2025-06-06 01:33:34,444 | INFO     | job summary report
[2025-06-06 01:33:56] 2025-06-06 01:33:34,444 | INFO     | --------------------------------------------------
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | PanDA job id: 6678363755
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | task id: 45006595
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | errors: (none)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | pilot state: finished 
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | transexitcode: 0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | exeerrorcode: 0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | exeerrordiag: 
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | exitcode: 0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,445 | INFO     | exitmsg: OK
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | cpuconsumptiontime: 36203 s
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | nevents: 400
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | neventsw: 0
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | pid: 1359368
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | pgrp: 1359368
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | corecount: 12
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | event service: False
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | sizes: {0: 2396514, 1: 2397222, 2: 2397421, 13: 2397421, 23: 2397477, 30: 2397711, 34: 2397867, 10149: 2426191, 10150: 2426190, 10152: 2435317, 10231: 2435431}
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | --------------------------------------------------
[2025-06-06 01:33:56] 2025-06-06 01:33:34,446 | INFO     | 
[2025-06-06 01:33:56] 2025-06-06 01:33:34,451 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,563 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,564 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 01:33:56] 2025-06-06 01:33:34,565 | INFO     | job 6678363755 has completed (purged errors)
[2025-06-06 01:33:56] 2025-06-06 01:33:34,565 | INFO     | overall cleanup function is called
[2025-06-06 01:33:56] 2025-06-06 01:33:35,046 | INFO     | PID=1352903 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 01:33:56] 2025-06-06 01:33:35,046 | INFO     | .. there are 2 such processes running
[2025-06-06 01:33:56] 2025-06-06 01:33:35,574 | INFO     | --- collectZombieJob: --- 10, [1359368]
[2025-06-06 01:33:56] 2025-06-06 01:33:35,575 | INFO     | zombie collector waiting for pid 1359368
[2025-06-06 01:33:56] 2025-06-06 01:33:35,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 01:33:56] 2025-06-06 01:33:35,575 | INFO     | collected zombie processes
[2025-06-06 01:33:56] 2025-06-06 01:33:35,575 | INFO     | will attempt to kill all subprocesses of pid=1359368
[2025-06-06 01:33:56] 2025-06-06 01:33:35,766 | INFO     | process IDs to be killed: [1359368] (in reverse order)
[2025-06-06 01:33:56] 2025-06-06 01:33:35,871 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 01:33:56] 2025-06-06 01:33:35,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 01:33:56] 2025-06-06 01:33:35,873 | INFO     | did not find any defunct processes belonging to 1359368
[2025-06-06 01:33:56] 2025-06-06 01:33:35,879 | INFO     | did not find any defunct processes belonging to 1359368
[2025-06-06 01:33:56] 2025-06-06 01:33:35,879 | INFO     | ready for new job
[2025-06-06 01:33:56] 2025-06-06 01:33:35,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 01:33:56] 2025-06-06 01:33:35,881 | INFO     | **************************************
[2025-06-06 01:33:56] 2025-06-06 01:33:35,881 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 01:33:56] 2025-06-06 01:33:35,881 | INFO     | **************************************
[2025-06-06 01:33:56] 2025-06-06 01:33:35,881 | INFO     | 
[2025-06-06 01:33:56] 2025-06-06 01:33:35,899 | INFO     | architecture information:
[2025-06-06 01:33:56] 2025-06-06 01:33:35,902 | INFO     | executing command: cat /etc/os-release
[2025-06-06 01:33:56] 2025-06-06 01:33:35,943 | INFO     | cat /etc/os-release:
[2025-06-06 01:33:56] NAME="CentOS Linux"
[2025-06-06 01:33:56] VERSION="7 (Core)"
[2025-06-06 01:33:56] ID="centos"
[2025-06-06 01:33:56] ID_LIKE="rhel fedora"
[2025-06-06 01:33:56] VERSION_ID="7"
[2025-06-06 01:33:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 01:33:56] ANSI_COLOR="0;31"
[2025-06-06 01:33:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 01:33:56] HOME_URL="https://www.centos.org/"
[2025-06-06 01:33:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 01:33:56] 
[2025-06-06 01:33:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 01:33:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 01:33:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 01:33:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 01:33:56] 
[2025-06-06 01:33:56] 2025-06-06 01:33:35,943 | INFO     | **************************************
[2025-06-06 01:33:56] 2025-06-06 01:33:36,447 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 01:33:56] 2025-06-06 01:33:36,507 | INFO     | sufficient remaining disk space (30845960192 B)
[2025-06-06 01:33:56] 2025-06-06 01:33:36,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 01:33:56] 2025-06-06 01:33:36,507 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 01:33:56] 2025-06-06 01:33:36,507 | INFO     | update_server=False
[2025-06-06 01:33:56] 2025-06-06 01:33:36,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 01:33:56] 2025-06-06 01:33:36,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 01:33:56] 2025-06-06 01:33:36,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 01:33:56] 2025-06-06 01:33:36,623 | INFO     | aborting loop
[2025-06-06 01:33:56] 2025-06-06 01:33:36,802 | INFO     | all job control threads have been joined
[2025-06-06 01:33:56] 2025-06-06 01:33:37,006 | INFO     | all payload control threads have been joined
[2025-06-06 01:33:56] 2025-06-06 01:33:37,059 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 01:33:56] 2025-06-06 01:33:37,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 01:33:56] 2025-06-06 01:33:37,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 01:33:56] 2025-06-06 01:33:37,365 | INFO     | all data control threads have been joined
[2025-06-06 01:33:56] 2025-06-06 01:33:37,511 | INFO     | [job] retrieve thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:37,527 | INFO     | [job] validate thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:37,627 | INFO     | [job] job monitor thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:37,807 | INFO     | [job] control thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,011 | INFO     | [payload] control thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,087 | INFO     | [payload] validate_post thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,127 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 01:33:56] 2025-06-06 01:33:38,366 | INFO     | [data] control thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,518 | INFO     | [data] copytool_out thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,534 | INFO     | [data] copytool_in thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,558 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:38,602 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:39,006 | INFO     | [payload] failed_post thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:39,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 01:33:56] 2025-06-06 01:33:40,466 | INFO     | [job] queue monitor thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:42,326 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:46,730 | INFO     | job.realtimelogging is not enabled
[2025-06-06 01:33:56] 2025-06-06 01:33:47,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 01:33:56] 2025-06-06 01:33:49,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895497365312)>', '<ExcThread(monitor, started 139895053997824)>']
[2025-06-06 01:33:56] 2025-06-06 01:33:50,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 01:33:56] 2025-06-06 01:33:50,131 | INFO     | [monitor] control thread has ended
[2025-06-06 01:33:56] 2025-06-06 01:33:54,702 | INFO     | all workflow threads have been joined
[2025-06-06 01:33:56] 2025-06-06 01:33:54,703 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 01:33:56] 2025-06-06 01:33:54,703 | INFO     | traces error code: 0
[2025-06-06 01:33:56] 2025-06-06 01:33:54,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 01:33:56] 2025-06-06 01:33:54,938 [wrapper] ==== pilot stdout END ====
[2025-06-06 01:33:56] 2025-06-06 01:33:54,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 01:33:56] 2025-06-06 01:33:55,022 [wrapper] pilotpid: 1352903
[2025-06-06 01:33:56] 2025-06-06 01:33:55,040 [wrapper] Pilot exit status: 0
[2025-06-06 01:33:56] 2025-06-06 01:33:55,222 [wrapper] pandaids: 6678363755
[2025-06-06 01:33:56] 2025-06-06 01:33:55,522 [wrapper] cleanup supervisor_pilot 1408446 1352904
[2025-06-06 01:33:56] 2025-06-06 01:33:55,570 [wrapper] Test setup, not cleaning
[2025-06-06 01:33:56] 2025-06-06 01:33:55,626 [wrapper] apfmon messages muted
[2025-06-06 01:33:56] 2025-06-06 01:33:55,651 [wrapper] ==== wrapper stdout END ====
[2025-06-06 01:33:56] 2025-06-06 01:33:55,675 [wrapper] ==== wrapper stderr END ====
[2025-06-06 01:33:56]  *** Error codes and diagnostics ***
[2025-06-06 01:33:56]     "exeErrorCode": 0,
[2025-06-06 01:33:56]     "exeErrorDiag": "",
[2025-06-06 01:33:56]     "pilotErrorCode": 0,
[2025-06-06 01:33:56]     "pilotErrorDiag": "",
[2025-06-06 01:33:56]  *** Listing of results directory ***
[2025-06-06 01:33:56] total 389232
[2025-06-06 01:33:56] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-06 01:33:56] -rwx------ 1 boinc boinc     37140 Jun  4 05:36 runpilot2-wrapper.sh
[2025-06-06 01:33:56] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:36 queuedata.json
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc       100 Jun  5 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 01:33:56] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 22:40 run_atlas
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc       105 Jun  5 22:40 job.xml
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc      9357 Jun  5 22:40 init_data.xml
[2025-06-06 01:33:56] -rw-r--r-- 2 boinc boinc 213660114 Jun  5 22:40 EVNT.45006593._002146.pool.root.1
[2025-06-06 01:33:56] drwxrwx--x 2 boinc boinc      4096 Jun  5 22:40 shared
[2025-06-06 01:33:56] -rw-r--r-- 2 boinc boinc    508883 Jun  5 22:40 input.tar.gz
[2025-06-06 01:33:56] -rw-r--r-- 2 boinc boinc     15093 Jun  5 22:40 start_atlas.sh
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc         0 Jun  5 22:40 boinc_lockfile
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 22:40 pandaJob.out
[2025-06-06 01:33:56] -rw------- 1 boinc boinc    987721 Jun  5 22:41 agis_schedconf.cvmfs.json
[2025-06-06 01:33:56] -rw------- 1 boinc boinc   1598969 Jun  5 22:41 agis_ddmendpoints.agis.ALL.json
[2025-06-06 01:33:56] drwx------ 4 boinc boinc      4096 Jun  5 22:41 pilot3
[2025-06-06 01:33:56] -rw------- 1 boinc boinc 178258929 Jun  6 01:31 HITS.45006595._053630.pool.root.1
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc       530 Jun  6 01:31 boinc_task_state.xml
[2025-06-06 01:33:56] -rw------- 1 boinc boinc      1020 Jun  6 01:32 memory_monitor_summary.json
[2025-06-06 01:33:56] -rw------- 1 boinc boinc    424078 Jun  6 01:32 log.45006595._053630.job.log.tgz.1
[2025-06-06 01:33:56] -rw------- 1 boinc boinc        95 Jun  6 01:33 pilot_heartbeat.json
[2025-06-06 01:33:56] -rw------- 1 boinc boinc      7662 Jun  6 01:33 heartbeat.json
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 01:33 boinc_mmap_file
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc        28 Jun  6 01:33 wrapper_checkpoint.txt
[2025-06-06 01:33:56] -rw------- 1 boinc boinc      4448 Jun  6 01:33 pilotlog.txt
[2025-06-06 01:33:56] -rw------- 1 boinc boinc    980589 Jun  6 01:33 log.45006595._053630.job.log.1
[2025-06-06 01:33:56] -rw------- 1 boinc boinc       357 Jun  6 01:33 output.list
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc       620 Jun  6 01:33 runtime_log
[2025-06-06 01:33:56] -rw------- 1 boinc boinc   1423360 Jun  6 01:33 result.tar.gz
[2025-06-06 01:33:56] -rw------- 1 boinc boinc       651 Jun  6 01:33 sE3MDmnyvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmfnaKDmqI913n.diag
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc      8949 Jun  6 01:33 runtime_log.err
[2025-06-06 01:33:56] -rw-rw-r-- 1 boinc boinc     21042 Jun  6 01:33 stderr.txt
[2025-06-06 01:33:56] HITS file was successfully produced:
[2025-06-06 01:33:56] -rw------- 1 boinc boinc 178258929 Jun  6 01:31 shared/HITS.pool.root.1
[2025-06-06 01:33:56]  *** Contents of shared directory: ***
[2025-06-06 01:33:56] total 384656
[2025-06-06 01:33:56] -rw-r--r-- 2 boinc boinc 213660114 Jun  5 22:40 ATLAS.root_0
[2025-06-06 01:33:56] -rw-r--r-- 2 boinc boinc    508883 Jun  5 22:40 input.tar.gz
[2025-06-06 01:33:56] -rw-r--r-- 2 boinc boinc     15093 Jun  5 22:40 start_atlas.sh
[2025-06-06 01:33:56] -rw------- 1 boinc boinc 178258929 Jun  6 01:31 HITS.pool.root.1
[2025-06-06 01:33:56] -rw------- 1 boinc boinc   1423360 Jun  6 01:33 result.tar.gz
01:33:58 (1349269): run_atlas exited; CPU time 36277.217852
01:33:58 (1349269): called boinc_finish(0)

</stderr_txt>
]]>

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