Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
07:45:02 (1307754): wrapper (7.7.26015): starting
07:45:02 (1307754): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 07:45:02] Arguments: --nthreads 12
[2025-06-06 07:45:02] Threads: 12
[2025-06-06 07:45:02] Checking for CVMFS
[2025-06-06 07:45:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 07:45:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 07:45:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 07:45:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 07:45:02] 2.12.7.0 15468 4165 64196 146847 1 56 3208008 4096000 90 130560 0 3476402 99.987 1122884 157 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 07:45:02] CVMFS is ok
[2025-06-06 07:45:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 07:45:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 07:45:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 07:45:02] Further information can be found at the LHC@home message board.
[2025-06-06 07:45:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 07:45:02] Checking for apptainer binary...
[2025-06-06 07:45:02] apptainer is not installed, using version from CVMFS
[2025-06-06 07:45:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 07:45:02] gggg3250
[2025-06-06 07:45:02] apptainer works
[2025-06-06 07:45:02] Set ATHENA_PROC_NUMBER=12
[2025-06-06 07:45:02] Set ATHENA_CORE_NUMBER=12
[2025-06-06 07:45:02] Starting ATLAS job with PandaID=6678247903
[2025-06-06 07:45:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:09:55]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:09:55] 2025-06-06 12:09:40,367 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678247903/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,367 | INFO     | extracted standard info from prmon json
[2025-06-06 12:09:55] 2025-06-06 12:09:40,367 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:09:55] 2025-06-06 12:09:40,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:09:55] 2025-06-06 12:09:40,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:09:55] 2025-06-06 12:09:40,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:09:55] 2025-06-06 12:09:40,373 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:09:55] 2025-06-06 12:09:40,373 | INFO     | sum of square deviations: 5387023865.104247
[2025-06-06 12:09:55] 2025-06-06 12:09:40,383 | INFO     | sum of deviations: -75157499568.06177
[2025-06-06 12:09:55] 2025-06-06 12:09:40,383 | INFO     | mean x: 1749203800.1853282
[2025-06-06 12:09:55] 2025-06-06 12:09:40,383 | INFO     | mean y: 2765990.667953668
[2025-06-06 12:09:55] 2025-06-06 12:09:40,383 | INFO     | -- intersect: 24406924418.196423
[2025-06-06 12:09:55] 2025-06-06 12:09:40,383 | INFO     | intersect: 24406924418.196423
[2025-06-06 12:09:55] 2025-06-06 12:09:40,383 | INFO     | chi2: 2.0277906716804583
[2025-06-06 12:09:55] 2025-06-06 12:09:40,384 | INFO     | sum of square deviations: 5081014162.4291725
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | sum of deviations: -53523434142.744095
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | mean x: 1749203647.6889763
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | mean y: 2776635.4842519686
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | -- intersect: 18428898517.13798
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | intersect: 18428898517.13798
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | chi2: 1.3215919683839052
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | current chi2=1.3215919683839052 (change=34.82601597685211 %)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,385 | INFO     | sum of square deviations: 4786818634.747007
[2025-06-06 12:09:55] 2025-06-06 12:09:40,386 | INFO     | sum of deviations: -49707651798.07226
[2025-06-06 12:09:55] 2025-06-06 12:09:40,386 | INFO     | mean x: 1749203495.1927712
[2025-06-06 12:09:55] 2025-06-06 12:09:40,386 | INFO     | mean y: 2778613.626506024
[2025-06-06 12:09:55] 2025-06-06 12:09:40,386 | INFO     | -- intersect: 18166992655.884377
[2025-06-06 12:09:55] 2025-06-06 12:09:40,386 | INFO     | intersect: 18166992655.884377
[2025-06-06 12:09:55] 2025-06-06 12:09:40,394 | INFO     | chi2: 1.321987647469833
[2025-06-06 12:09:55] 2025-06-06 12:09:40,395 | INFO     | current chi2=1.321987647469833 (change=-0.02993958009685168 %)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,395 | INFO     | right removable region: 248
[2025-06-06 12:09:55] 2025-06-06 12:09:40,395 | INFO     | sum of square deviations: 5080984882.4291725
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | sum of deviations: -109078319746.7795
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | mean x: 1749203952.6889763
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | mean y: 2782705.0787401577
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | -- intersect: 37554602375.62239
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | intersect: 37554602375.62239
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | chi2: 0.8336831400615838
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | current chi2=0.8336831400615838 (change=58.88712026815376 %)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,396 | INFO     | sum of square deviations: 4786790695.502043
[2025-06-06 12:09:55] 2025-06-06 12:09:40,397 | INFO     | sum of deviations: -108076560374.38156
[2025-06-06 12:09:55] 2025-06-06 12:09:40,397 | INFO     | mean x: 1749204105.1847389
[2025-06-06 12:09:55] 2025-06-06 12:09:40,397 | INFO     | mean y: 2782181.8995983936
[2025-06-06 12:09:55] 2025-06-06 12:09:40,397 | INFO     | -- intersect: 39496458656.77772
[2025-06-06 12:09:55] 2025-06-06 12:09:40,397 | INFO     | intersect: 39496458656.77772
[2025-06-06 12:09:55] 2025-06-06 12:09:40,398 | INFO     | chi2: 0.8237661500512289
[2025-06-06 12:09:55] 2025-06-06 12:09:40,398 | INFO     | current chi2=0.8237661500512289 (change=1.1895394705502127 %)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,398 | INFO     | left removable region: 20
[2025-06-06 12:09:55] 2025-06-06 12:09:40,398 | INFO     | sum of square deviations: 3674945155.6272054
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | sum of deviations: -78018516451.35527
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | mean x: 1749204074.6798246
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | mean y: 2794398.1184210526
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | -- intersect: 37138125973.94274
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | intersect: 37138125973.94274
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | chi2: 0.09429291471051167
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | -- intersect: 37138125973.94274
[2025-06-06 12:09:55] 2025-06-06 12:09:40,408 | INFO     | current memory leak: -21.23 B/s (using 228 data points, chi2=0.09)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | ..............................
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . Timing measurements:
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . get job = 0 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . initial setup = 1 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . payload setup = 3 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . stage-in = 0 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . payload execution = 15783 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . stage-out = 3 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | . log creation = 1 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,409 | INFO     | ..............................
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | 
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | job summary report
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | --------------------------------------------------
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | PanDA job id: 6678247903
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | task id: 45006595
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | errors: (none)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | pilot state: finished 
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | transexitcode: 0
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | exeerrorcode: 0
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | exeerrordiag: 
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | exitcode: 0
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | exitmsg: OK
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | cpuconsumptiontime: 21167 s
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | nevents: 400
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | neventsw: 0
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | pid: 1319802
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | pgrp: 1319802
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | corecount: 12
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | event service: False
[2025-06-06 12:09:55] 2025-06-06 12:09:40,587 | INFO     | sizes: {0: 2397365, 2: 2397571, 11: 2397599, 15790: 2428411, 15795: 2437454, 15857: 2437568}
[2025-06-06 12:09:55] 2025-06-06 12:09:40,588 | INFO     | --------------------------------------------------
[2025-06-06 12:09:55] 2025-06-06 12:09:40,588 | INFO     | 
[2025-06-06 12:09:55] 2025-06-06 12:09:40,588 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,639 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | job 6678247903 has completed (purged errors)
[2025-06-06 12:09:55] 2025-06-06 12:09:40,640 | INFO     | overall cleanup function is called
[2025-06-06 12:09:55] 2025-06-06 12:09:41,646 | INFO     | --- collectZombieJob: --- 10, [1319802]
[2025-06-06 12:09:55] 2025-06-06 12:09:41,647 | INFO     | zombie collector waiting for pid 1319802
[2025-06-06 12:09:55] 2025-06-06 12:09:41,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:09:55] 2025-06-06 12:09:41,647 | INFO     | collected zombie processes
[2025-06-06 12:09:55] 2025-06-06 12:09:41,647 | INFO     | will attempt to kill all subprocesses of pid=1319802
[2025-06-06 12:09:55] 2025-06-06 12:09:41,790 | INFO     | process IDs to be killed: [1319802] (in reverse order)
[2025-06-06 12:09:55] 2025-06-06 12:09:42,091 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:09:55] 2025-06-06 12:09:42,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:09:55] 2025-06-06 12:09:42,092 | INFO     | did not find any defunct processes belonging to 1319802
[2025-06-06 12:09:55] 2025-06-06 12:09:42,093 | INFO     | did not find any defunct processes belonging to 1319802
[2025-06-06 12:09:55] 2025-06-06 12:09:42,093 | INFO     | ready for new job
[2025-06-06 12:09:55] 2025-06-06 12:09:42,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:09:55] 2025-06-06 12:09:42,094 | INFO     | **************************************
[2025-06-06 12:09:55] 2025-06-06 12:09:42,094 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:09:55] 2025-06-06 12:09:42,094 | INFO     | **************************************
[2025-06-06 12:09:55] 2025-06-06 12:09:42,094 | INFO     | 
[2025-06-06 12:09:55] 2025-06-06 12:09:42,115 | INFO     | architecture information:
[2025-06-06 12:09:55] 2025-06-06 12:09:42,115 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:09:55] 2025-06-06 12:09:42,135 | INFO     | cat /etc/os-release:
[2025-06-06 12:09:55] NAME="CentOS Linux"
[2025-06-06 12:09:55] VERSION="7 (Core)"
[2025-06-06 12:09:55] ID="centos"
[2025-06-06 12:09:55] ID_LIKE="rhel fedora"
[2025-06-06 12:09:55] VERSION_ID="7"
[2025-06-06 12:09:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:09:55] ANSI_COLOR="0;31"
[2025-06-06 12:09:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:09:55] HOME_URL="https://www.centos.org/"
[2025-06-06 12:09:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:09:55] 
[2025-06-06 12:09:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:09:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:09:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:09:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:09:55] 
[2025-06-06 12:09:55] 2025-06-06 12:09:42,135 | INFO     | **************************************
[2025-06-06 12:09:55] 2025-06-06 12:09:42,639 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | INFO     | sufficient remaining disk space (98502180864 B)
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | INFO     | update_server=False
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:09:55] 2025-06-06 12:09:42,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:09:55] 2025-06-06 12:09:42,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:09:55] 2025-06-06 12:09:43,098 | INFO     | all data control threads have been joined
[2025-06-06 12:09:55] 2025-06-06 12:09:43,250 | INFO     | all payload control threads have been joined
[2025-06-06 12:09:55] 2025-06-06 12:09:43,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:09:55] 2025-06-06 12:09:43,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:09:55] 2025-06-06 12:09:43,423 | INFO     | aborting loop
[2025-06-06 12:09:55] 2025-06-06 12:09:43,695 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:43,870 | INFO     | all job control threads have been joined
[2025-06-06 12:09:55] 2025-06-06 12:09:43,919 | INFO     | [job] validate thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:43,919 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:43,931 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:43,975 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,103 | INFO     | [data] control thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:09:55] 2025-06-06 12:09:44,255 | INFO     | [payload] control thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,299 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,431 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,443 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,619 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:44,875 | INFO     | [job] control thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:45,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:45,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:09:55] 2025-06-06 12:09:46,134 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:46,611 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:47,343 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:09:55] 2025-06-06 12:09:48,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140027111855936)>', '<ExcThread(monitor, started 140026369259264)>']
[2025-06-06 12:09:55] 2025-06-06 12:09:48,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:09:55] 2025-06-06 12:09:48,715 | INFO     | [monitor] control thread has ended
[2025-06-06 12:09:55] 2025-06-06 12:09:53,590 | INFO     | all workflow threads have been joined
[2025-06-06 12:09:55] 2025-06-06 12:09:53,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:09:55] 2025-06-06 12:09:53,591 | INFO     | traces error code: 0
[2025-06-06 12:09:55] 2025-06-06 12:09:53,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:09:55] 2025-06-06 12:09:53,847 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:09:55] 2025-06-06 12:09:53,887 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:09:55] 2025-06-06 12:09:53,943 [wrapper] pilotpid: 1313328
[2025-06-06 12:09:55] 2025-06-06 12:09:53,962 [wrapper] Pilot exit status: 0
[2025-06-06 12:09:55] 2025-06-06 12:09:54,051 [wrapper] pandaids: 6678247903
[2025-06-06 12:09:55] 2025-06-06 12:09:54,080 [wrapper] cleanup supervisor_pilot 1378429 1313329
[2025-06-06 12:09:55] 2025-06-06 12:09:54,087 [wrapper] Test setup, not cleaning
[2025-06-06 12:09:55] 2025-06-06 12:09:54,097 [wrapper] apfmon messages muted
[2025-06-06 12:09:55] 2025-06-06 12:09:54,107 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:09:55] 2025-06-06 12:09:54,119 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:09:55]  *** Error codes and diagnostics ***
[2025-06-06 12:09:55]     "exeErrorCode": 0,
[2025-06-06 12:09:55]     "exeErrorDiag": "",
[2025-06-06 12:09:55]     "pilotErrorCode": 0,
[2025-06-06 12:09:55]     "pilotErrorDiag": "",
[2025-06-06 12:09:55]  *** Listing of results directory ***
[2025-06-06 12:09:55] total 386060
[2025-06-06 12:09:55] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-06 12:09:55] -rw-r--r-- 1 boinc boinc      5111 Jun  4 02:17 queuedata.json
[2025-06-06 12:09:55] -rwx------ 1 boinc boinc     37140 Jun  4 02:20 runpilot2-wrapper.sh
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc       100 Jun  6 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:09:55] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 07:45 run_atlas
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc       105 Jun  6 07:45 job.xml
[2025-06-06 12:09:55] -rw-r--r-- 2 boinc boinc     15093 Jun  6 07:45 start_atlas.sh
[2025-06-06 12:09:55] drwxrwx--x 2 boinc boinc      4096 Jun  6 07:45 shared
[2025-06-06 12:09:55] -rw-r--r-- 2 boinc boinc    508883 Jun  6 07:45 input.tar.gz
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc      9367 Jun  6 07:45 init_data.xml
[2025-06-06 12:09:55] -rw-r--r-- 2 boinc boinc 213048113 Jun  6 07:45 EVNT.45006593._002028.pool.root.1
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc         0 Jun  6 07:45 boinc_lockfile
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc      2525 Jun  6 07:45 pandaJob.out
[2025-06-06 12:09:55] -rw------- 1 boinc boinc    987967 Jun  6 07:45 agis_schedconf.cvmfs.json
[2025-06-06 12:09:55] drwx------ 4 boinc boinc      4096 Jun  6 07:45 pilot3
[2025-06-06 12:09:55] -rw------- 1 boinc boinc 174600314 Jun  6 12:07 HITS.45006595._050580.pool.root.1
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc       530 Jun  6 12:07 boinc_task_state.xml
[2025-06-06 12:09:55] -rw------- 1 boinc boinc      1034 Jun  6 12:08 memory_monitor_summary.json
[2025-06-06 12:09:55] -rw------- 1 boinc boinc   1598969 Jun  6 12:08 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:09:55] -rw------- 1 boinc boinc    456505 Jun  6 12:08 log.45006595._050580.job.log.tgz.1
[2025-06-06 12:09:55] -rw------- 1 boinc boinc        95 Jun  6 12:08 pilot_heartbeat.json
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 12:09 boinc_mmap_file
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc        28 Jun  6 12:09 wrapper_checkpoint.txt
[2025-06-06 12:09:55] -rw------- 1 boinc boinc      7671 Jun  6 12:09 heartbeat.json
[2025-06-06 12:09:55] -rw------- 1 boinc boinc      4499 Jun  6 12:09 pilotlog.txt
[2025-06-06 12:09:55] -rw------- 1 boinc boinc   1462126 Jun  6 12:09 log.45006595._050580.job.log.1
[2025-06-06 12:09:55] -rw------- 1 boinc boinc       357 Jun  6 12:09 output.list
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc       620 Jun  6 12:09 runtime_log
[2025-06-06 12:09:55] -rw------- 1 boinc boinc   1935360 Jun  6 12:09 result.tar.gz
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc      8972 Jun  6 12:09 runtime_log.err
[2025-06-06 12:09:55] -rw------- 1 boinc boinc       655 Jun  6 12:09 q2WMDmdusg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOtmKDmSnkaOm.diag
[2025-06-06 12:09:55] -rw-rw-r-- 1 boinc boinc     21083 Jun  6 12:09 stderr.txt
[2025-06-06 12:09:55] HITS file was successfully produced:
[2025-06-06 12:09:55] -rw------- 1 boinc boinc 174600314 Jun  6 12:07 shared/HITS.pool.root.1
[2025-06-06 12:09:55]  *** Contents of shared directory: ***
[2025-06-06 12:09:55] total 380984
[2025-06-06 12:09:55] -rw-r--r-- 2 boinc boinc     15093 Jun  6 07:45 start_atlas.sh
[2025-06-06 12:09:55] -rw-r--r-- 2 boinc boinc    508883 Jun  6 07:45 input.tar.gz
[2025-06-06 12:09:55] -rw-r--r-- 2 boinc boinc 213048113 Jun  6 07:45 ATLAS.root_0
[2025-06-06 12:09:55] -rw------- 1 boinc boinc 174600314 Jun  6 12:07 HITS.pool.root.1
[2025-06-06 12:09:55] -rw------- 1 boinc boinc   1935360 Jun  6 12:09 result.tar.gz
12:09:56 (1307754): run_atlas exited; CPU time 21221.652972
12:09:56 (1307754): called boinc_finish(0)

</stderr_txt>
]]>

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