Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-06 16:47:12 (41960): Detected: vboxwrapper 26206
2025-06-06 16:47:12 (41960): Detected: BOINC client v8.0.2
2025-06-06 16:47:12 (41960): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-06 16:47:13 (41960): Successfully copied 'init_data.xml' to the shared directory.
2025-06-06 16:47:13 (41960): Create VM. (boinc_186075e4c830ebe3, slot#0)
2025-06-06 16:47:14 (41960): Setting Memory Size for VM. (4800MB)
2025-06-06 16:47:14 (41960): Setting CPU Count for VM. (8)
2025-06-06 16:47:14 (41960): Setting Chipset Options for VM.
2025-06-06 16:47:15 (41960): Setting Graphics Controller Options for VM.
2025-06-06 16:47:15 (41960): Setting Boot Options for VM.
2025-06-06 16:47:15 (41960): Setting Network Configuration for NAT.
2025-06-06 16:47:15 (41960): Enabling VM Network Access.
2025-06-06 16:47:16 (41960): Disabling USB Support for VM.
2025-06-06 16:47:16 (41960): Disabling COM Port Support for VM.
2025-06-06 16:47:16 (41960): Disabling LPT Port Support for VM.
2025-06-06 16:47:16 (41960): Disabling Audio Support for VM.
2025-06-06 16:47:17 (41960): Disabling Clipboard Support for VM.
2025-06-06 16:47:17 (41960): Disabling Drag and Drop Support for VM.
2025-06-06 16:47:17 (41960): Adding storage controller(s) to VM.
2025-06-06 16:47:18 (41960): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-06 16:47:18 (41960): Adding VirtualBox Guest Additions to VM.
2025-06-06 16:47:18 (41960): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-06 16:47:19 (41960): forwarding host port 47695 to guest port 80
2025-06-06 16:47:19 (41960): Enabling remote desktop for VM.
2025-06-06 16:47:19 (41960): Required extension pack not installed, remote desktop not enabled.
2025-06-06 16:47:19 (41960): Enabling shared directory for VM.
2025-06-06 16:47:20 (41960): Starting VM using VBoxManage interface. (boinc_186075e4c830ebe3, slot#0)
2025-06-06 16:47:29 (41960): Successfully started VM. (PID = '46252')
2025-06-06 16:47:29 (41960): Reporting VM Process ID to BOINC.
2025-06-06 16:47:29 (41960): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-06 16:47:29 (41960): Guest Log: CPUID EDX: 0x178bfbff
2025-06-06 16:47:29 (41960): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-06 16:47:29 (41960): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-06 16:47:29 (41960): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-06 16:47:29 (41960): Detected: Web Application Enabled (http://localhost:47695)
2025-06-06 16:47:29 (41960): Preference change detected
2025-06-06 16:47:29 (41960): Setting CPU throttle for VM. (25%)
2025-06-06 16:47:30 (41960): Setting checkpoint interval to 10000 seconds. (Higher value of (Preference: 10000 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-06 16:47:31 (41960): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-06 16:47:31 (41960): Guest Log: BIOS: Booting from Hard Disk...
2025-06-06 16:47:40 (41960): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-06 16:47:40 (41960): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-06 16:47:40 (41960): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-06 16:47:58 (41960): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-06 16:47:58 (41960): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-06 16:48:22 (41960): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.000311 main     Log opened 2025-06-06T16:48:20.585420000Z
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.000672 main     OS Product: Linux
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.000787 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.000908 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.001019 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.001022 main     Process ID: 1369
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.001024 main     Package type: LINUX_64BITS_GENERIC
2025-06-06 16:48:22 (41960): Guest Log: 00:00:00.003438 main     5.2.32 r132073 started. Verbose level = 0
2025-06-06 16:48:22 (41960): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-06 16:48:22 (41960): Guest Log: [INFO] Mounting shared directory
2025-06-06 16:48:22 (41960): Guest Log: [INFO] Checking for init_data.xml
2025-06-06 16:48:32 (41960): Guest Log: 00:00:10.013691 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 805 602 000ns (GuestNow=1 749 250 112 397 067 000 ns GuestLast=1 749 228 500 591 465 000 ns fSetTimeLastLoop=true )
2025-06-06 16:48:33 (41960): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-06 16:48:33 (41960): Guest Log: [INFO] Detected branch: prod
2025-06-06 16:48:34 (41960): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-06 16:48:34 (41960): Guest Log: Copying input files
2025-06-06 16:48:38 (41960): Guest Log: Copied input files into RunAtlas.
2025-06-06 16:48:38 (41960): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-06 16:48:38 (41960): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-06 16:48:38 (41960): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-06 16:48:38 (41960): Guest Log: Further information can be found at the LHC@home message board.
2025-06-06 16:48:51 (41960): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-06 16:48:52 (41960): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-06 16:48:52 (41960): Guest Log: 2.6.3.0 1655 0 30188 146878 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-06 16:48:55 (41960): Guest Log: copied the webapp to /var/www
2025-06-06 16:48:55 (41960): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-06 16:48:55 (41960): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-06 16:48:56 (41960): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-06 16:48:56 (41960): Guest Log:  *** Starting ATLAS job. (PandaID=6678363765 taskID=45006595) ***
2025-06-06 17:24:40 (41960): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 17:25:01 (41960): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 17:29:22 (41960): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 17:29:42 (41960): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 18:28:16 (41960): Status Report: Elapsed Time: '6000.000000'
2025-06-06 18:28:16 (41960): Status Report: CPU Time: '8274.062500'
2025-06-06 19:28:54 (41960): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 19:29:14 (41960): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 20:08:39 (41960): Status Report: Elapsed Time: '12000.000000'
2025-06-06 20:08:39 (41960): Status Report: CPU Time: '22263.171875'
2025-06-06 21:47:00 (41960): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 21:47:20 (41960): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 21:49:03 (41960): Status Report: Elapsed Time: '18000.000000'
2025-06-06 21:49:03 (41960): Status Report: CPU Time: '36038.984375'
2025-06-06 22:33:39 (41960): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 22:33:59 (41960): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 22:58:53 (41960): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 22:59:13 (41960): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 23:29:50 (41960): Status Report: Elapsed Time: '24000.000000'
2025-06-06 23:29:50 (41960): Status Report: CPU Time: '49697.968750'
2025-06-07 01:09:55 (41960): Status Report: Elapsed Time: '30000.000000'
2025-06-07 01:09:55 (41960): Status Report: CPU Time: '63619.796875'
2025-06-07 01:23:35 (41960): Guest Log:  *** Job finished ***
2025-06-07 01:23:35 (41960): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:35,972 | INFO     | [data] copytool_out thread has finished
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:36,476 | INFO     | [job] queue monitor thread has finished
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:39,538 | INFO     | [data] queue_monitor thread has finished
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:39,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801450006336)>', '<ExcThread(monitor, started 139801135126272)>']
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:40,511 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:40,512 | INFO     | [monitor] control thread has ended
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:44,624 | INFO     | all workflow threads have been joined
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:44,624 | INFO     | end of generic workflow (traces error code: 0)
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:44,624 | INFO     | traces error code: 0
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:44,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:44,997 [wrapper] ==== pilot stdout END ====
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,007 [wrapper] ==== wrapper stdout RESUME ====
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,016 [wrapper] pilotpid: 6021
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,025 [wrapper] Pilot exit status: 0
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,280 [wrapper] pandaids: 6678363765
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,430 [wrapper] cleanup supervisor_pilot 29404 6022
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,440 [wrapper] Test setup, not cleaning
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,450 [wrapper] apfmon messages muted
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,461 [wrapper] ==== wrapper stdout END ====
2025-06-07 01:23:35 (41960): Guest Log: 2025-06-07 07:21:45,469 [wrapper] ==== wrapper stderr END ====
2025-06-07 01:23:35 (41960): Guest Log:  *** Error codes and diagnostics ***
2025-06-07 01:23:35 (41960): Guest Log:     "exeErrorCode": 0,
2025-06-07 01:23:35 (41960): Guest Log:     "exeErrorDiag": "",
2025-06-07 01:23:35 (41960): Guest Log:     "pilotErrorCode": 0,
2025-06-07 01:23:35 (41960): Guest Log:     "pilotErrorDiag": "",
2025-06-07 01:23:35 (41960): Guest Log:  *** Listing of results directory ***
2025-06-07 01:23:35 (41960): Guest Log: total 181340
2025-06-07 01:23:35 (41960): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 04:58 pilot3.tar.gz
2025-06-07 01:23:35 (41960): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 05:39 runpilot2-wrapper.sh
2025-06-07 01:23:35 (41960): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 05:39 queuedata.json
2025-06-07 01:23:35 (41960): Guest Log: -rwxr-xr-x. 1 atlas atlas      9043 Jun  6 22:48 init_data.xml
2025-06-07 01:23:35 (41960): Guest Log: -rwxr-xr-x. 1 atlas atlas    508878 Jun  6 22:48 input.tar.gz
2025-06-07 01:23:35 (41960): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 22:48 start_atlas.sh
2025-06-07 01:23:35 (41960): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 22:48 EVNT.45006593._002147.pool.root.1 -> /data/./ATLAS.root_0
2025-06-07 01:23:35 (41960): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  6 22:48 pandaJob.out
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas    985748 Jun  6 22:50 agis_schedconf.cvmfs.json
2025-06-07 01:23:35 (41960): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 22:51 pilot3
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas 177462540 Jun  7 07:18 HITS.45006595._053640.pool.root.1
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas        95 Jun  7 07:20 pilot_heartbeat.json
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  7 07:20 memory_monitor_summary.json
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  7 07:20 agis_ddmendpoints.agis.ALL.json
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas    466542 Jun  7 07:20 log.45006595._053640.job.log.tgz.1
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas      7736 Jun  7 07:21 heartbeat.json
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  7 07:21 pilotlog.txt
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas   1768644 Jun  7 07:21 log.45006595._053640.job.log.1
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas       357 Jun  7 07:21 output.list
2025-06-07 01:23:35 (41960): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  7 07:21 runtime_log
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas   2252800 Jun  7 07:21 result.tar.gz
2025-06-07 01:23:35 (41960): Guest Log: -rw-r--r--. 1 atlas atlas      8623 Jun  7 07:21 runtime_log.err
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas       669 Jun  7 07:21 H0vMDmj1vg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmonaKDmobCMzn.diag
2025-06-07 01:23:35 (41960): Guest Log: Looking for outputfile HITS.45006595._053640.pool.root.1
2025-06-07 01:23:35 (41960): Guest Log: HITS file was successfully produced
2025-06-07 01:23:35 (41960): Guest Log: -rw-------. 1 atlas atlas 177462540 Jun  7 07:18 /home/atlas/RunAtlas/HITS.45006595._053640.pool.root.1
2025-06-07 01:23:39 (41960): Guest Log: Successfully finished the ATLAS job!
2025-06-07 01:23:39 (41960): Guest Log: Copying the results back to the shared directory!
2025-06-07 01:23:39 (41960): Guest Log:  *** Contents of shared directory: ***
2025-06-07 01:23:39 (41960): Guest Log: total 389032
2025-06-07 01:23:39 (41960): Guest Log: -rwxrwxrwx. 1 root root 218110125 Jun  6 22:47 ATLAS.root_0
2025-06-07 01:23:39 (41960): Guest Log: -rwxrwxrwx. 1 root root 177462540 Jun  7  2025 HITS.pool.root.1
2025-06-07 01:23:39 (41960): Guest Log: -rwxrwxrwx. 1 root root      9043 Jun  6 22:47 init_data.xml
2025-06-07 01:23:39 (41960): Guest Log: -rwxrwxrwx. 1 root root    508878 Jun  4 10:33 input.tar.gz
2025-06-07 01:23:39 (41960): Guest Log: -rwxrwxrwx. 1 root root   2252800 Jun  7  2025 result.tar.gz
2025-06-07 01:23:39 (41960): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 10:33 start_atlas.sh
2025-06-07 01:23:39 (41960): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-07 01:23:39 (41960): VM Completion File Detected.
2025-06-07 01:23:39 (41960): Powering off VM.
2025-06-07 01:23:40 (41960): Successfully stopped VM.
2025-06-07 01:23:40 (41960): Deregistering VM. (boinc_186075e4c830ebe3, slot#0)
2025-06-07 01:23:40 (41960): Removing network bandwidth throttle group from VM.
2025-06-07 01:23:40 (41960): Removing VM from VirtualBox.
01:23:46 (41960): called boinc_finish(0)

</stderr_txt>
]]>

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