Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-07 02:11:30 (31084): Detected: vboxwrapper 26206
2025-06-07 02:11:30 (31084): Detected: BOINC client v8.0.2
2025-06-07 02:11:30 (31084): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-07 02:11:31 (31084): Successfully copied 'init_data.xml' to the shared directory.
2025-06-07 02:11:31 (31084): Create VM. (boinc_83cf141329afe37c, slot#3)
2025-06-07 02:11:32 (31084): Setting Memory Size for VM. (4800MB)
2025-06-07 02:11:32 (31084): Setting CPU Count for VM. (8)
2025-06-07 02:11:32 (31084): Setting Chipset Options for VM.
2025-06-07 02:11:33 (31084): Setting Graphics Controller Options for VM.
2025-06-07 02:11:33 (31084): Setting Boot Options for VM.
2025-06-07 02:11:33 (31084): Setting Network Configuration for NAT.
2025-06-07 02:11:34 (31084): Enabling VM Network Access.
2025-06-07 02:11:34 (31084): Disabling USB Support for VM.
2025-06-07 02:11:34 (31084): Disabling COM Port Support for VM.
2025-06-07 02:11:34 (31084): Disabling LPT Port Support for VM.
2025-06-07 02:11:35 (31084): Disabling Audio Support for VM.
2025-06-07 02:11:35 (31084): Disabling Clipboard Support for VM.
2025-06-07 02:11:35 (31084): Disabling Drag and Drop Support for VM.
2025-06-07 02:11:35 (31084): Adding storage controller(s) to VM.
2025-06-07 02:11:36 (31084): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-07 02:11:36 (31084): Adding VirtualBox Guest Additions to VM.
2025-06-07 02:11:36 (31084): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-07 02:11:37 (31084): forwarding host port 54037 to guest port 80
2025-06-07 02:11:37 (31084): Enabling remote desktop for VM.
2025-06-07 02:11:37 (31084): Required extension pack not installed, remote desktop not enabled.
2025-06-07 02:11:37 (31084): Enabling shared directory for VM.
2025-06-07 02:11:38 (31084): Starting VM using VBoxManage interface. (boinc_83cf141329afe37c, slot#3)
2025-06-07 02:11:48 (31084): Successfully started VM. (PID = '49816')
2025-06-07 02:11:48 (31084): Reporting VM Process ID to BOINC.
2025-06-07 02:11:48 (31084): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-07 02:11:48 (31084): Guest Log: CPUID EDX: 0x178bfbff
2025-06-07 02:11:48 (31084): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-07 02:11:48 (31084): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-07 02:11:48 (31084): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-07 02:11:48 (31084): Detected: Web Application Enabled (http://localhost:54037)
2025-06-07 02:11:48 (31084): Preference change detected
2025-06-07 02:11:48 (31084): Setting CPU throttle for VM. (25%)
2025-06-07 02:11:48 (31084): Setting checkpoint interval to 10000 seconds. (Higher value of (Preference: 10000 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-07 02:11:50 (31084): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-07 02:11:50 (31084): Guest Log: BIOS: Booting from Hard Disk...
2025-06-07 02:11:59 (31084): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-07 02:11:59 (31084): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-07 02:11:59 (31084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-07 02:12:16 (31084): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-07 02:12:16 (31084): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-07 02:12:40 (31084): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000276 main     Log opened 2025-06-07T02:12:38.761896000Z
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000517 main     OS Product: Linux
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000618 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000763 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000856 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000859 main     Process ID: 1371
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.000861 main     Package type: LINUX_64BITS_GENERIC
2025-06-07 02:12:40 (31084): Guest Log: 00:00:00.002823 main     5.2.32 r132073 started. Verbose level = 0
2025-06-07 02:12:40 (31084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-07 02:12:40 (31084): Guest Log: [INFO] Mounting shared directory
2025-06-07 02:12:40 (31084): Guest Log: [INFO] Checking for init_data.xml
2025-06-07 02:12:50 (31084): Guest Log: 00:00:10.022161 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 166 377 000ns (GuestNow=1 749 283 969 933 520 000 ns GuestLast=1 749 262 358 767 143 000 ns fSetTimeLastLoop=true )
2025-06-07 02:13:20 (31084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-07 02:13:20 (31084): Guest Log: [INFO] Detected branch: prod
2025-06-07 02:13:20 (31084): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-07 02:13:20 (31084): Guest Log: Copying input files
2025-06-07 02:13:25 (31084): Guest Log: Copied input files into RunAtlas.
2025-06-07 02:13:25 (31084): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-07 02:13:25 (31084): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-07 02:13:25 (31084): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-07 02:13:25 (31084): Guest Log: Further information can be found at the LHC@home message board.
2025-06-07 02:13:42 (31084): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-07 02:13:42 (31084): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-07 02:13:42 (31084): Guest Log: 2.6.3.0 1673 0 32152 146891 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-07 02:13:44 (31084): Guest Log: copied the webapp to /var/www
2025-06-07 02:13:44 (31084): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-07 02:13:44 (31084): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-07 02:13:45 (31084): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-07 02:13:45 (31084): Guest Log:  *** Starting ATLAS job. (PandaID=6678363382 taskID=45006595) ***
2025-06-07 03:51:52 (31084): Status Report: Elapsed Time: '6000.000000'
2025-06-07 03:51:52 (31084): Status Report: CPU Time: '5837.078125'
2025-06-07 04:38:48 (31084): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 04:39:08 (31084): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 05:32:18 (31084): Status Report: Elapsed Time: '12000.000000'
2025-06-07 05:32:18 (31084): Status Report: CPU Time: '20104.906250'
2025-06-07 07:12:22 (31084): Status Report: Elapsed Time: '18000.000000'
2025-06-07 07:12:22 (31084): Status Report: CPU Time: '34251.906250'
2025-06-07 08:15:11 (31084): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 08:15:32 (31084): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 08:36:17 (31084): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 08:36:37 (31084): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 08:53:10 (31084): Status Report: Elapsed Time: '24000.000000'
2025-06-07 08:53:10 (31084): Status Report: CPU Time: '48363.578125'
2025-06-07 09:02:02 (31084): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 09:02:22 (31084): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 10:33:36 (31084): Status Report: Elapsed Time: '30000.000000'
2025-06-07 10:33:36 (31084): Status Report: CPU Time: '62274.156250'
2025-06-07 11:03:57 (31084): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 11:04:18 (31084): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 12:00:38 (31084): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 12:00:59 (31084): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 12:14:25 (31084): Status Report: Elapsed Time: '36000.000000'
2025-06-07 12:14:25 (31084): Status Report: CPU Time: '76019.859375'
2025-06-07 12:42:55 (31084): Guest Log:  *** Job finished ***
2025-06-07 12:42:55 (31084): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:40:52,073 | INFO     | [data] queue_monitor thread has finished
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:40:55,784 | INFO     | job.realtimelogging is not enabled
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:40:56,786 | INFO     | [payload] run_realtimelog thread has finished
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:40:57,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664343603008)>', '<ExcThread(monitor, started 139663603918592)>']
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:40:57,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:40:57,849 | INFO     | [monitor] control thread has ended
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:02,510 | INFO     | all workflow threads have been joined
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:02,511 | INFO     | end of generic workflow (traces error code: 0)
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:02,511 | INFO     | traces error code: 0
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:02,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:02,978 [wrapper] ==== pilot stdout END ====
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:02,990 [wrapper] ==== wrapper stdout RESUME ====
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,001 [wrapper] pilotpid: 6172
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,011 [wrapper] Pilot exit status: 0
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,135 [wrapper] pandaids: 6678363382
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,251 [wrapper] cleanup supervisor_pilot  3447 6173
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,262 [wrapper] Test setup, not cleaning
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,276 [wrapper] apfmon messages muted
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,288 [wrapper] ==== wrapper stdout END ====
2025-06-07 12:42:55 (31084): Guest Log: 2025-06-07 18:41:03,298 [wrapper] ==== wrapper stderr END ====
2025-06-07 12:42:55 (31084): Guest Log:  *** Error codes and diagnostics ***
2025-06-07 12:42:55 (31084): Guest Log:     "exeErrorCode": 0,
2025-06-07 12:42:55 (31084): Guest Log:     "exeErrorDiag": "",
2025-06-07 12:42:55 (31084): Guest Log:     "pilotErrorCode": 0,
2025-06-07 12:42:55 (31084): Guest Log:     "pilotErrorDiag": "",
2025-06-07 12:42:55 (31084): Guest Log:  *** Listing of results directory ***
2025-06-07 12:42:55 (31084): Guest Log: total 186188
2025-06-07 12:42:55 (31084): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 04:58 pilot3.tar.gz
2025-06-07 12:42:55 (31084): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 05:22 queuedata.json
2025-06-07 12:42:55 (31084): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 05:23 runpilot2-wrapper.sh
2025-06-07 12:42:55 (31084): Guest Log: -rwxr-xr-x. 1 atlas atlas      9044 Jun  7 08:13 init_data.xml
2025-06-07 12:42:55 (31084): Guest Log: -rwxr-xr-x. 1 atlas atlas    508886 Jun  7 08:13 input.tar.gz
2025-06-07 12:42:55 (31084): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  7 08:13 start_atlas.sh
2025-06-07 12:42:55 (31084): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  7 08:13 EVNT.45006593._002138.pool.root.1 -> /data/./ATLAS.root_0
2025-06-07 12:42:55 (31084): Guest Log: -rw-r--r--. 1 atlas atlas      2526 Jun  7 08:13 pandaJob.out
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas    985748 Jun  7 08:24 agis_schedconf.cvmfs.json
2025-06-07 12:42:55 (31084): Guest Log: drwx------. 4 atlas atlas      4096 Jun  7 08:24 pilot3
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas 182010632 Jun  7 18:37 HITS.45006595._053422.pool.root.1
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas      1031 Jun  7 18:40 memory_monitor_summary.json
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  7 18:40 agis_ddmendpoints.agis.ALL.json
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas    504497 Jun  7 18:40 log.45006595._053422.job.log.tgz.1
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas        95 Jun  7 18:40 pilot_heartbeat.json
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas      7737 Jun  7 18:40 heartbeat.json
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas      4794 Jun  7 18:41 pilotlog.txt
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas   1929332 Jun  7 18:41 log.45006595._053422.job.log.1
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas       357 Jun  7 18:41 output.list
2025-06-07 12:42:55 (31084): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  7 18:41 runtime_log
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas   2457600 Jun  7 18:41 result.tar.gz
2025-06-07 12:42:55 (31084): Guest Log: -rw-r--r--. 1 atlas atlas      8623 Jun  7 18:41 runtime_log.err
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas       670 Jun  7 18:41 aFFNDmbmvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYOnKDmIkghxm.diag
2025-06-07 12:42:55 (31084): Guest Log: Looking for outputfile HITS.45006595._053422.pool.root.1
2025-06-07 12:42:55 (31084): Guest Log: HITS file was successfully produced
2025-06-07 12:42:55 (31084): Guest Log: -rw-------. 1 atlas atlas 182010632 Jun  7 18:37 /home/atlas/RunAtlas/HITS.45006595._053422.pool.root.1
2025-06-07 12:42:59 (31084): Guest Log: Successfully finished the ATLAS job!
2025-06-07 12:42:59 (31084): Guest Log: Copying the results back to the shared directory!
2025-06-07 12:42:59 (31084): Guest Log:  *** Contents of shared directory: ***
2025-06-07 12:42:59 (31084): Guest Log: total 391156
2025-06-07 12:42:59 (31084): Guest Log: -rwxrwxrwx. 1 root root 215528363 Jun  7 08:11 ATLAS.root_0
2025-06-07 12:42:59 (31084): Guest Log: -rwxrwxrwx. 1 root root 182010632 Jun  7  2025 HITS.pool.root.1
2025-06-07 12:42:59 (31084): Guest Log: -rwxrwxrwx. 1 root root      9044 Jun  7 08:11 init_data.xml
2025-06-07 12:42:59 (31084): Guest Log: -rwxrwxrwx. 1 root root    508886 Jun  4 10:35 input.tar.gz
2025-06-07 12:42:59 (31084): Guest Log: -rwxrwxrwx. 1 root root   2457600 Jun  7  2025 result.tar.gz
2025-06-07 12:42:59 (31084): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 10:35 start_atlas.sh
2025-06-07 12:42:59 (31084): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-07 12:42:59 (31084): VM Completion File Detected.
2025-06-07 12:42:59 (31084): Powering off VM.
2025-06-07 12:43:00 (31084): Successfully stopped VM.
2025-06-07 12:43:00 (31084): Deregistering VM. (boinc_83cf141329afe37c, slot#3)
2025-06-07 12:43:00 (31084): Removing network bandwidth throttle group from VM.
2025-06-07 12:43:00 (31084): Removing VM from VirtualBox.
12:43:06 (31084): called boinc_finish(0)

</stderr_txt>
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