Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:47:10 (2678180): wrapper (7.7.26015): starting
06:47:10 (2678180): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:47:10] Arguments: --nthreads 8
[2025-06-04 06:47:10] Threads: 8
[2025-06-04 06:47:10] Checking for CVMFS
[2025-06-04 06:47:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:47:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:47:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:47:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:47:11] 2.12.6.0 8521 37207 536924 146777 3 889 33132034 40960001 20755 16776704 1 350413312 99.739 235325034 19107 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 06:47:11] CVMFS is ok
[2025-06-04 06:47:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:47:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 06:47:11] Further information can be found at the LHC@home message board.
[2025-06-04 06:47:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:47:11] Checking for apptainer binary...
[2025-06-04 06:47:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:47:11] Running /usr/bin/apptainer --version
[2025-06-04 06:47:11] apptainer version 1.4.1-1.el9
[2025-06-04 06:47:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:47:11] c7-4-30.aglt2.org
[2025-06-04 06:47:11] apptainer works
[2025-06-04 06:47:11] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:47:11] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:47:11] Starting ATLAS job with PandaID=6678286634
[2025-06-04 06:47:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:49:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:49:35]  guid=0f2020b9-3bf4-4f71-8278-95897030b640
[2025-06-04 07:49:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 07:49:35]  is_altstaged=None
[2025-06-04 07:49:35]  is_tar=False
[2025-06-04 07:49:35]  lfn=log.45006595._051547.job.log.tgz.1
[2025-06-04 07:49:35]  mtime=0
[2025-06-04 07:49:35]  protocol_id=None
[2025-06-04 07:49:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 07:49:35]  replicas=None
[2025-06-04 07:49:35]  scope=mc23_13p6TeV
[2025-06-04 07:49:35]  status=None
[2025-06-04 07:49:35]  status_code=0
[2025-06-04 07:49:35]  storage_token=
[2025-06-04 07:49:35]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678286634/log.45006595._051547.job.log.tgz.1
[2025-06-04 07:49:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/79/log.45006595._051547.job.log.tgz.1
[2025-06-04 07:49:35]  workdir=None
[2025-06-04 07:49:35] ]
[2025-06-04 07:49:35] 2025-06-04 11:49:08,749 | INFO     | transferring file log.45006595._051547.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678286634/log.45006595._051547.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 07:49:35] 2025-06-04 11:49:08,749 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678286634/log.45006595._051547.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._051547.job
[2025-06-04 07:49:35] 2025-06-04 11:49:08,769 | INFO     | adding to output.list: log.45006595._051547.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f6/79/log.45006595._051547.job.log.tg
[2025-06-04 07:49:35] 2025-06-04 11:49:08,770 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 07:49:35] 2025-06-04 11:49:08,770 | INFO     | summary of transferred files:
[2025-06-04 07:49:35] 2025-06-04 11:49:08,770 | INFO     |  -- lfn=log.45006595._051547.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 07:49:35] 2025-06-04 11:49:08,770 | INFO     | stage-out finished correctly
[2025-06-04 07:49:35] 2025-06-04 11:49:08,836 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 07:49:35] 2025-06-04 11:49:09,180 | INFO     | monitor loop #272: job 0:6678286634 is in state 'finished'
[2025-06-04 07:49:35] 2025-06-04 11:49:09,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:49:35] 2025-06-04 11:49:11,486 | INFO     | job 6678286634 has state=finished
[2025-06-04 07:49:35] 2025-06-04 11:49:11,486 | INFO     | preparing for final server update for job 6678286634 in state='finished'
[2025-06-04 07:49:35] 2025-06-04 11:49:11,487 | INFO     | this job has now completed (state=finished)
[2025-06-04 07:49:35] 2025-06-04 11:49:11,487 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 07:49:35] 2025-06-04 11:49:11,488 | INFO     | log transfer has been attempted: DONE
[2025-06-04 07:49:35] 2025-06-04 11:49:11,488 | INFO     | job 6678286634 has finished - writing final server update
[2025-06-04 07:49:35] 2025-06-04 11:49:11,488 | INFO     | total number of processed events: 400 (read)
[2025-06-04 07:49:35] 2025-06-04 11:49:11,506 | INFO     | executing command: lscpu
[2025-06-04 07:49:35] 2025-06-04 11:49:11,586 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 07:49:35] 2025-06-04 11:49:11,683 | INFO     | monitor loop #273: job 0:6678286634 is in state 'finished'
[2025-06-04 07:49:35] 2025-06-04 11:49:11,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:49:35] 2025-06-04 11:49:14,186 | INFO     | monitor loop #274: job 0:6678286634 is in state 'finished'
[2025-06-04 07:49:35] 2025-06-04 11:49:14,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:49:35] 2025-06-04 11:49:15,701 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 07:49:35] 2025-06-04 11:49:15,701 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678286634/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:49:35] 2025-06-04 11:49:15,702 | INFO     | extracted standard info from prmon json
[2025-06-04 07:49:35] 2025-06-04 11:49:15,702 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:49:35] 2025-06-04 11:49:15,702 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:49:35] 2025-06-04 11:49:15,702 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:49:35] 2025-06-04 11:49:15,702 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:49:35] 2025-06-04 11:49:15,703 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:49:35] 2025-06-04 11:49:15,703 | INFO     | sum of square deviations: 48810217.5
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | sum of deviations: 4343397182.500001
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | mean x: 1749035986.5
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | mean y: 2180299.537037037
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | -- intersect: -155636502848.21188
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | intersect: -155636502848.21188
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | chi2: 0.7157477539817788
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | -- intersect: -155636502848.21188
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | current memory leak: 88.99 B/s (using 54 data points, chi2=0.72)
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | ..............................
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | . Timing measurements:
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | . get job = 0 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | . initial setup = 2 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | . payload setup = 5 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | . stage-in = 0 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,704 | INFO     | . payload execution = 3683 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,705 | INFO     | . stage-out = 0 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,705 | INFO     | . log creation = 0 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,705 | INFO     | ..............................
[2025-06-04 07:49:35] 2025-06-04 11:49:15,748 | INFO     | 
[2025-06-04 07:49:35] 2025-06-04 11:49:15,748 | INFO     | job summary report
[2025-06-04 07:49:35] 2025-06-04 11:49:15,748 | INFO     | --------------------------------------------------
[2025-06-04 07:49:35] 2025-06-04 11:49:15,748 | INFO     | PanDA job id: 6678286634
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | task id: 45006595
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | errors: (none)
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | pilot state: finished 
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | transexitcode: 0
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | exeerrorcode: 0
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | exeerrordiag: 
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | exitcode: 0
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | exitmsg: OK
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | cpuconsumptiontime: 24284 s
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | nevents: 400
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | neventsw: 0
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | pid: 2688792
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | pgrp: 2688792
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | corecount: 8
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | event service: False
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | sizes: {0: 2405070, 1: 2405212, 4: 2405418, 11: 2405446, 3693: 2431080, 3694: 2440205, 3701: 2440319}
[2025-06-04 07:49:35] 2025-06-04 11:49:15,749 | INFO     | --------------------------------------------------
[2025-06-04 07:49:35] 2025-06-04 11:49:15,750 | INFO     | 
[2025-06-04 07:49:35] 2025-06-04 11:49:15,750 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 07:49:35] 2025-06-04 11:49:15,770 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,772 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:49:35] 2025-06-04 11:49:15,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,772 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:49:35] 2025-06-04 11:49:15,772 | INFO     | job 6678286634 has completed (purged errors)
[2025-06-04 07:49:35] 2025-06-04 11:49:15,773 | INFO     | overall cleanup function is called
[2025-06-04 07:49:35] 2025-06-04 11:49:16,778 | INFO     | --- collectZombieJob: --- 10, [2688792]
[2025-06-04 07:49:35] 2025-06-04 11:49:16,778 | INFO     | zombie collector waiting for pid 2688792
[2025-06-04 07:49:35] 2025-06-04 11:49:16,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:49:35] 2025-06-04 11:49:16,778 | INFO     | collected zombie processes
[2025-06-04 07:49:35] 2025-06-04 11:49:16,778 | INFO     | will attempt to kill all subprocesses of pid=2688792
[2025-06-04 07:49:35] 2025-06-04 11:49:17,083 | INFO     | process IDs to be killed: [2688792] (in reverse order)
[2025-06-04 07:49:35] 2025-06-04 11:49:17,179 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:49:35] 2025-06-04 11:49:17,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:49:35] 2025-06-04 11:49:17,197 | INFO     | did not find any defunct processes belonging to 2688792
[2025-06-04 07:49:35] 2025-06-04 11:49:17,214 | INFO     | did not find any defunct processes belonging to 2688792
[2025-06-04 07:49:35] 2025-06-04 11:49:17,215 | INFO     | ready for new job
[2025-06-04 07:49:35] 2025-06-04 11:49:17,215 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:49:35] 2025-06-04 11:49:17,216 | INFO     | **************************************
[2025-06-04 07:49:35] 2025-06-04 11:49:17,216 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:49:35] 2025-06-04 11:49:17,216 | INFO     | **************************************
[2025-06-04 07:49:35] 2025-06-04 11:49:17,216 | INFO     | 
[2025-06-04 07:49:35] 2025-06-04 11:49:17,234 | INFO     | architecture information:
[2025-06-04 07:49:35] 2025-06-04 11:49:17,234 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:49:35] 2025-06-04 11:49:17,251 | INFO     | cat /etc/os-release:
[2025-06-04 07:49:35] NAME="CentOS Linux"
[2025-06-04 07:49:35] VERSION="7 (Core)"
[2025-06-04 07:49:35] ID="centos"
[2025-06-04 07:49:35] ID_LIKE="rhel fedora"
[2025-06-04 07:49:35] VERSION_ID="7"
[2025-06-04 07:49:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:49:35] ANSI_COLOR="0;31"
[2025-06-04 07:49:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:49:35] HOME_URL="https://www.centos.org/"
[2025-06-04 07:49:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:49:35] 
[2025-06-04 07:49:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:49:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:49:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:49:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:49:35] 
[2025-06-04 07:49:35] 2025-06-04 11:49:17,251 | INFO     | **************************************
[2025-06-04 07:49:35] 2025-06-04 11:49:17,754 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 07:49:35] 2025-06-04 11:49:17,772 | INFO     | sufficient remaining disk space (128737869824 B)
[2025-06-04 07:49:35] 2025-06-04 11:49:17,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:49:35] 2025-06-04 11:49:17,772 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:49:35] 2025-06-04 11:49:17,772 | INFO     | update_server=False
[2025-06-04 07:49:35] 2025-06-04 11:49:17,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:49:35] 2025-06-04 11:49:17,772 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:49:35] 2025-06-04 11:49:17,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:49:35] 2025-06-04 11:49:17,773 | INFO     | aborting loop
[2025-06-04 07:49:35] 2025-06-04 11:49:17,823 | INFO     | all data control threads have been joined
[2025-06-04 07:49:35] 2025-06-04 11:49:18,059 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:49:35] 2025-06-04 11:49:18,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:49:35] 2025-06-04 11:49:18,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:49:35] 2025-06-04 11:49:18,457 | INFO     | all job control threads have been joined
[2025-06-04 07:49:35] 2025-06-04 11:49:18,777 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:18,778 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:18,812 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:18,828 | INFO     | all payload control threads have been joined
[2025-06-04 07:49:35] 2025-06-04 11:49:18,829 | INFO     | [data] control thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,020 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,391 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:49:35] 2025-06-04 11:49:19,462 | INFO     | [job] control thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,763 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,776 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,804 | INFO     | [job] validate thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:19,834 | INFO     | [payload] control thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:20,012 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:20,197 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:20,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:49:35] 2025-06-04 11:49:21,765 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:23,419 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:28,613 | INFO     | job.realtimelogging is not enabled
[2025-06-04 07:49:35] 2025-06-04 11:49:29,618 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:49:35] 2025-06-04 11:49:30,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739904173888)>', '<ExcThread(monitor, started 139738958780160)>']
[2025-06-04 07:49:35] 2025-06-04 11:49:31,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:49:35] 2025-06-04 11:49:31,126 | INFO     | [monitor] control thread has ended
[2025-06-04 07:49:35] 2025-06-04 11:49:35,338 | INFO     | all workflow threads have been joined
[2025-06-04 07:49:35] 2025-06-04 11:49:35,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:49:35] 2025-06-04 11:49:35,338 | INFO     | traces error code: 0
[2025-06-04 07:49:35] 2025-06-04 11:49:35,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:49:35] 2025-06-04 11:49:35,471 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:49:35] 2025-06-04 11:49:35,474 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:49:35] 2025-06-04 11:49:35,477 [wrapper] pilotpid: 2682297
[2025-06-04 07:49:35] 2025-06-04 11:49:35,479 [wrapper] Pilot exit status: 0
[2025-06-04 07:49:35] 2025-06-04 11:49:35,490 [wrapper] pandaids: 6678286634
[2025-06-04 07:49:35] 2025-06-04 11:49:35,583 [wrapper] cleanup supervisor_pilot 2976894 2682298
[2025-06-04 07:49:35] 2025-06-04 11:49:35,585 [wrapper] Test setup, not cleaning
[2025-06-04 07:49:35] 2025-06-04 11:49:35,588 [wrapper] apfmon messages muted
[2025-06-04 07:49:35] 2025-06-04 11:49:35,590 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:49:35] 2025-06-04 11:49:35,592 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:49:35]  *** Error codes and diagnostics ***
[2025-06-04 07:49:35]     "exeErrorCode": 0,
[2025-06-04 07:49:35]     "exeErrorDiag": "",
[2025-06-04 07:49:35]     "pilotErrorCode": 0,
[2025-06-04 07:49:35]     "pilotErrorDiag": "",
[2025-06-04 07:49:35]  *** Listing of results directory ***
[2025-06-04 07:49:35] total 394488
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 07:49:35] -rwx------. 1 boincer umatlas     37140 Jun  3 23:16 runpilot2-wrapper.sh
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 23:16 queuedata.json
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas       100 Jun  4 06:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:49:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 06:47 run_atlas
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas       105 Jun  4 06:47 job.xml
[2025-06-04 07:49:35] -rw-r--r--. 2 boincer umatlas 216354765 Jun  4 06:47 EVNT.45006593._002065.pool.root.1
[2025-06-04 07:49:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:47 start_atlas.sh
[2025-06-04 07:49:35] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 06:47 shared
[2025-06-04 07:49:35] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 06:47 input.tar.gz
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas         0 Jun  4 06:47 boinc_lockfile
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 06:47 pandaJob.out
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas    986812 Jun  4 06:47 agis_schedconf.cvmfs.json
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas   1603667 Jun  4 06:47 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:49:35] drwx------. 4 boincer umatlas      4096 Jun  4 06:47 pilot3
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas      6935 Jun  4 07:46 init_data.xml
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas 182415720 Jun  4 07:48 HITS.45006595._051547.pool.root.1
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas       529 Jun  4 07:48 boinc_task_state.xml
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas        95 Jun  4 07:48 pilot_heartbeat.json
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas      1028 Jun  4 07:49 memory_monitor_summary.json
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas    299185 Jun  4 07:49 log.45006595._051547.job.log.tgz.1
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas      7685 Jun  4 07:49 heartbeat.json
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas        27 Jun  4 07:49 wrapper_checkpoint.txt
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 07:49 boinc_mmap_file
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas      4426 Jun  4 07:49 pilotlog.txt
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas    374352 Jun  4 07:49 log.45006595._051547.job.log.1
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas       357 Jun  4 07:49 output.list
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas       620 Jun  4 07:49 runtime_log
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas    696320 Jun  4 07:49 result.tar.gz
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 07:49 runtime_log.err
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas       650 Jun  4 07:49 o1xMDmRntg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr3mKDmR4U9Dn.diag
[2025-06-04 07:49:35] -rw-r--r--. 1 boincer umatlas     21283 Jun  4 07:49 stderr.txt
[2025-06-04 07:49:35] HITS file was successfully produced:
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas 182415720 Jun  4 07:48 shared/HITS.pool.root.1
[2025-06-04 07:49:35]  *** Contents of shared directory: ***
[2025-06-04 07:49:35] total 390628
[2025-06-04 07:49:35] -rw-r--r--. 2 boincer umatlas 216354765 Jun  4 06:47 ATLAS.root_0
[2025-06-04 07:49:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:47 start_atlas.sh
[2025-06-04 07:49:35] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 06:47 input.tar.gz
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas 182415720 Jun  4 07:48 HITS.pool.root.1
[2025-06-04 07:49:35] -rw-------. 1 boincer umatlas    696320 Jun  4 07:49 result.tar.gz
07:49:37 (2678180): run_atlas exited; CPU time 24406.538495
07:49:37 (2678180): called boinc_finish(0)

</stderr_txt>
]]>

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