Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:41 (29722): wrapper (7.7.26015): starting
00:39:41 (29722): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:39:41] Arguments: --nthreads 8
[2025-06-05 00:39:41] Threads: 8
[2025-06-05 00:39:41] Checking for CVMFS
[2025-06-05 00:39:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:39:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:39:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:39:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:39:44] 2.11.2.0 361 33844 92408 146797 2 158 19595337 25165824 3627 130560 0 17024122 99.795 20293729 2365 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:39:44] CVMFS is ok
[2025-06-05 00:39:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:39:44] Checking for apptainer binary...
[2025-06-05 00:39:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:39:44] Running /usr/bin/apptainer --version
[2025-06-05 00:39:44] apptainer version 1.3.2-1.el7
[2025-06-05 00:39:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:39:56] cg-vwn321.simple-grid.lan
[2025-06-05 00:39:56] apptainer works
[2025-06-05 00:39:56] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:39:56] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:39:56] Starting ATLAS job with PandaID=6678363662
[2025-06-05 00:39:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:47:56]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:47:56] 2025-06-05 02:35:47,417 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 04:47:56] 2025-06-05 02:35:47,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 04:47:56] 2025-06-05 02:35:47,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 04:47:56] 2025-06-05 02:35:47,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 04:47:56] 2025-06-05 02:35:47,423 | INFO     | fitting pss+swap vs Time
[2025-06-05 04:47:56] 2025-06-05 02:35:47,423 | INFO     | sum of square deviations: 3723716330.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,425 | INFO     | sum of deviations: -4838538605.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,426 | INFO     | mean x: 1749083854.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,426 | INFO     | mean y: 2491767.0436681225
[2025-06-05 04:47:56] 2025-06-05 02:35:47,426 | INFO     | -- intersect: 2275223898.3231697
[2025-06-05 04:47:56] 2025-06-05 02:35:47,426 | INFO     | intersect: 2275223898.3231697
[2025-06-05 04:47:56] 2025-06-05 02:35:47,426 | INFO     | chi2: 2.6867693000530135
[2025-06-05 04:47:56] 2025-06-05 02:35:47,427 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,429 | INFO     | sum of deviations: 10170546286.999998
[2025-06-05 04:47:56] 2025-06-05 02:35:47,429 | INFO     | mean x: 1749083701.5
[2025-06-05 04:47:56] 2025-06-05 02:35:47,429 | INFO     | mean y: 2501187.8928571427
[2025-06-05 04:47:56] 2025-06-05 02:35:47,429 | INFO     | -- intersect: -5101855913.944679
[2025-06-05 04:47:56] 2025-06-05 02:35:47,429 | INFO     | intersect: -5101855913.944679
[2025-06-05 04:47:56] 2025-06-05 02:35:47,430 | INFO     | chi2: 1.9285304001961205
[2025-06-05 04:47:56] 2025-06-05 02:35:47,430 | INFO     | current chi2=1.9285304001961205 (change=28.22121347902598 %)
[2025-06-05 04:47:56] 2025-06-05 02:35:47,430 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,432 | INFO     | sum of deviations: 9800848528.000008
[2025-06-05 04:47:56] 2025-06-05 02:35:47,432 | INFO     | mean x: 1749083549.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,432 | INFO     | mean y: 2500940.7625570777
[2025-06-05 04:47:56] 2025-06-05 02:35:47,432 | INFO     | -- intersect: -5260973508.253756
[2025-06-05 04:47:56] 2025-06-05 02:35:47,432 | INFO     | intersect: -5260973508.253756
[2025-06-05 04:47:56] 2025-06-05 02:35:47,433 | INFO     | chi2: 1.9290616975248238
[2025-06-05 04:47:56] 2025-06-05 02:35:47,433 | INFO     | current chi2=1.9290616975248238 (change=-0.02754933646102976 %)
[2025-06-05 04:47:56] 2025-06-05 02:35:47,433 | INFO     | right removable region: 218
[2025-06-05 04:47:56] 2025-06-05 02:35:47,433 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,435 | INFO     | sum of deviations: -46290962670.49999
[2025-06-05 04:47:56] 2025-06-05 02:35:47,435 | INFO     | mean x: 1749084006.5
[2025-06-05 04:47:56] 2025-06-05 02:35:47,435 | INFO     | mean y: 2518046.1026785714
[2025-06-05 04:47:56] 2025-06-05 02:35:47,436 | INFO     | -- intersect: 23234863545.85843
[2025-06-05 04:47:56] 2025-06-05 02:35:47,436 | INFO     | intersect: 23234863545.85843
[2025-06-05 04:47:56] 2025-06-05 02:35:47,436 | INFO     | chi2: 0.9650975896829292
[2025-06-05 04:47:56] 2025-06-05 02:35:47,436 | INFO     | current chi2=0.9650975896829292 (change=64.07962568040782 %)
[2025-06-05 04:47:56] 2025-06-05 02:35:47,437 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,438 | INFO     | sum of deviations: -43817926870.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,438 | INFO     | mean x: 1749084159.0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,438 | INFO     | mean y: 2516356.7762557077
[2025-06-05 04:47:56] 2025-06-05 02:35:47,439 | INFO     | -- intersect: 23534623629.421505
[2025-06-05 04:47:56] 2025-06-05 02:35:47,439 | INFO     | intersect: 23534623629.421505
[2025-06-05 04:47:56] 2025-06-05 02:35:47,439 | INFO     | chi2: 0.9501707412330663
[2025-06-05 04:47:56] 2025-06-05 02:35:47,439 | INFO     | current chi2=0.9501707412330663 (change=1.5466672603303204 %)
[2025-06-05 04:47:56] 2025-06-05 02:35:47,439 | INFO     | left removable region: 20
[2025-06-05 04:47:56] 2025-06-05 02:35:47,440 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 04:47:56] 2025-06-05 02:35:47,441 | INFO     | sum of deviations: -13936832168.499996
[2025-06-05 04:47:56] 2025-06-05 02:35:47,441 | INFO     | mean x: 1749084128.5
[2025-06-05 04:47:56] 2025-06-05 02:35:47,441 | INFO     | mean y: 2515970.1363636362
[2025-06-05 04:47:56] 2025-06-05 02:35:47,441 | INFO     | -- intersect: 10130239849.519777
[2025-06-05 04:47:56] 2025-06-05 02:35:47,441 | INFO     | intersect: 10130239849.519777
[2025-06-05 04:47:56] 2025-06-05 02:35:47,442 | INFO     | chi2: 0.11789808339900944
[2025-06-05 04:47:56] 2025-06-05 02:35:47,442 | INFO     | -- intersect: 10130239849.519777
[2025-06-05 04:47:56] 2025-06-05 02:35:47,442 | INFO     | current memory leak: -5.79 B/s (using 198 data points, chi2=0.12)
[2025-06-05 04:47:56] 2025-06-05 02:35:47,443 | INFO     | ..............................
[2025-06-05 04:47:56] 2025-06-05 02:35:47,443 | INFO     | . Timing measurements:
[2025-06-05 04:47:56] 2025-06-05 02:35:47,443 | INFO     | . get job = 0 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,443 | INFO     | . initial setup = 3 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,443 | INFO     | . payload setup = 15 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,443 | INFO     | . stage-in = 0 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,444 | INFO     | . payload execution = 13986 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,444 | INFO     | . stage-out = 7 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,444 | INFO     | . log creation = 1 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,444 | INFO     | ..............................
[2025-06-05 04:47:56] 2025-06-05 02:35:47,575 | INFO     | 
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | job summary report
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | --------------------------------------------------
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | PanDA job id: 6678363662
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | task id: 45006595
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | errors: (none)
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:47:56] 2025-06-05 02:35:47,576 | INFO     | pilot state: finished 
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | transexitcode: 0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | exeerrorcode: 0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | exeerrordiag: 
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | exitcode: 0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | exitmsg: OK
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | cpuconsumptiontime: 52014 s
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | nevents: 400
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | neventsw: 0
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | pid: 9607
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | pgrp: 9607
[2025-06-05 04:47:56] 2025-06-05 02:35:47,577 | INFO     | corecount: 8
[2025-06-05 04:47:56] 2025-06-05 02:35:47,578 | INFO     | event service: False
[2025-06-05 04:47:56] 2025-06-05 02:35:47,578 | INFO     | sizes: {0: 2396514, 1: 2397370, 2: 2397370, 10: 2397604, 12: 2397632, 14005: 2427507, 14006: 2427634, 14013: 2436687, 14101: 2436801}
[2025-06-05 04:47:56] 2025-06-05 02:35:47,578 | INFO     | --------------------------------------------------
[2025-06-05 04:47:56] 2025-06-05 02:35:47,578 | INFO     | 
[2025-06-05 04:47:56] 2025-06-05 02:35:47,578 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 04:47:56] 2025-06-05 02:35:48,178 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:47:56] 2025-06-05 02:35:48,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:47:56] 2025-06-05 02:35:48,181 | INFO     | job 6678363662 has completed (purged errors)
[2025-06-05 04:47:56] 2025-06-05 02:35:48,181 | INFO     | overall cleanup function is called
[2025-06-05 04:47:56] 2025-06-05 02:35:49,191 | INFO     | --- collectZombieJob: --- 10, [9607]
[2025-06-05 04:47:56] 2025-06-05 02:35:49,191 | INFO     | zombie collector waiting for pid 9607
[2025-06-05 04:47:56] 2025-06-05 02:35:49,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:47:56] 2025-06-05 02:35:49,191 | INFO     | collected zombie processes
[2025-06-05 04:47:56] 2025-06-05 02:35:49,191 | INFO     | will attempt to kill all subprocesses of pid=9607
[2025-06-05 04:47:56] 2025-06-05 02:35:49,335 | INFO     | process IDs to be killed: [9607] (in reverse order)
[2025-06-05 04:47:56] 2025-06-05 02:35:50,279 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:47:56] 2025-06-05 02:35:50,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:47:56] 2025-06-05 02:35:50,283 | INFO     | did not find any defunct processes belonging to 9607
[2025-06-05 04:47:56] 2025-06-05 02:35:50,286 | INFO     | did not find any defunct processes belonging to 9607
[2025-06-05 04:47:56] 2025-06-05 02:35:50,286 | INFO     | ready for new job
[2025-06-05 04:47:56] 2025-06-05 02:35:50,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:47:56] 2025-06-05 02:35:50,288 | INFO     | **************************************
[2025-06-05 04:47:56] 2025-06-05 02:35:50,288 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:47:56] 2025-06-05 02:35:50,289 | INFO     | **************************************
[2025-06-05 04:47:56] 2025-06-05 02:35:50,289 | INFO     | 
[2025-06-05 04:47:56] 2025-06-05 02:35:50,289 | INFO     | pilot is running in a VM
[2025-06-05 04:47:56] 2025-06-05 02:35:50,289 | INFO     | architecture information:
[2025-06-05 04:47:56] 2025-06-05 02:35:50,300 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:47:56] 2025-06-05 02:35:50,568 | INFO     | cat /etc/os-release:
[2025-06-05 04:47:56] NAME="CentOS Linux"
[2025-06-05 04:47:56] VERSION="7 (Core)"
[2025-06-05 04:47:56] ID="centos"
[2025-06-05 04:47:56] ID_LIKE="rhel fedora"
[2025-06-05 04:47:56] VERSION_ID="7"
[2025-06-05 04:47:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:47:56] ANSI_COLOR="0;31"
[2025-06-05 04:47:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:47:56] HOME_URL="https://www.centos.org/"
[2025-06-05 04:47:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:47:56] 
[2025-06-05 04:47:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:47:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:47:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:47:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:47:56] 
[2025-06-05 04:47:56] 2025-06-05 02:35:50,569 | INFO     | **************************************
[2025-06-05 04:47:56] 2025-06-05 02:35:51,071 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 04:47:56] 2025-06-05 02:35:51,335 | INFO     | sufficient remaining disk space (497252564992 B)
[2025-06-05 04:47:56] 2025-06-05 02:35:51,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:47:56] 2025-06-05 02:35:51,336 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:47:56] 2025-06-05 02:35:51,336 | INFO     | update_server=False
[2025-06-05 04:47:56] 2025-06-05 02:35:51,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:47:56] 2025-06-05 02:35:51,337 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:47:56] 2025-06-05 02:35:51,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:47:56] 2025-06-05 02:35:51,344 | INFO     | aborting loop
[2025-06-05 04:47:56] 2025-06-05 02:35:51,766 | INFO     | PID=2424 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-05 04:47:56] 2025-06-05 02:35:51,766 | INFO     | .. there are 9 such processes running
[2025-06-05 04:47:56] 2025-06-05 02:35:51,767 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:47:56] 2025-06-05 02:35:51,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:47:56] 2025-06-05 02:35:51,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:47:56] 2025-06-05 02:35:51,955 | INFO     | all payload control threads have been joined
[2025-06-05 04:47:56] 2025-06-05 02:35:52,335 | INFO     | all data control threads have been joined
[2025-06-05 04:47:56] 2025-06-05 02:35:52,342 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,350 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,536 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:47:56] 2025-06-05 02:35:52,628 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:47:56] 2025-06-05 02:35:52,633 | INFO     | [job] validate thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,732 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,782 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,820 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:52,842 | INFO     | all job control threads have been joined
[2025-06-05 04:47:56] 2025-06-05 02:35:52,961 | INFO     | [payload] control thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:53,236 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:53,341 | INFO     | [data] control thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:53,538 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:53,621 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:53,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:53,848 | INFO     | [job] control thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:54,635 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:55,347 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:47:56] 2025-06-05 02:35:57,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624011261760)>', '<ExcThread(monitor, started 140623587825408)>']
[2025-06-05 04:47:56] 2025-06-05 02:35:57,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:47:56] 2025-06-05 02:35:57,802 | INFO     | [monitor] control thread has ended
[2025-06-05 04:47:56] 2025-06-05 02:36:02,336 | INFO     | all workflow threads have been joined
[2025-06-05 04:47:56] 2025-06-05 02:36:02,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:47:56] 2025-06-05 02:36:02,336 | INFO     | traces error code: 0
[2025-06-05 04:47:56] 2025-06-05 02:36:02,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:47:56] 2025-06-05 02:36:02,808 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:47:56] 2025-06-05 02:36:02,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:47:56] 2025-06-05 02:36:03,008 [wrapper] pilotpid: 2424
[2025-06-05 04:47:56] 2025-06-05 02:36:03,113 [wrapper] Pilot exit status: 0
[2025-06-05 04:47:56] 2025-06-05 02:36:03,505 [wrapper] pandaids: 6678363662
[2025-06-05 04:47:56] 2025-06-05 02:36:04,502 [wrapper] cleanup supervisor_pilot  9338 2425
[2025-06-05 04:47:56] 2025-06-05 02:36:04,614 [wrapper] Test setup, not cleaning
[2025-06-05 04:47:56] 2025-06-05 02:36:04,667 [wrapper] apfmon messages muted
[2025-06-05 04:47:56] 2025-06-05 02:36:04,764 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:47:56] 2025-06-05 02:36:04,863 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:47:56]  *** Error codes and diagnostics ***
[2025-06-05 04:47:56]     "exeErrorCode": 0,
[2025-06-05 04:47:56]     "exeErrorDiag": "",
[2025-06-05 04:47:56]     "pilotErrorCode": 0,
[2025-06-05 04:47:56]     "pilotErrorDiag": "",
[2025-06-05 04:47:56]  *** Listing of results directory ***
[2025-06-05 04:47:56] total 394012
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:31 queuedata.json
[2025-06-05 04:47:56] -rwx------. 1 boinc boinc     37140 Jun  4 07:31 runpilot2-wrapper.sh
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:47:56] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:39 run_atlas
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:39 job.xml
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc      6391 Jun  5 00:39 init_data.xml
[2025-06-05 04:47:56] -rw-r--r--. 2 boinc boinc 215986814 Jun  5 00:39 EVNT.45006593._002143.pool.root.1
[2025-06-05 04:47:56] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:39 start_atlas.sh
[2025-06-05 04:47:56] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:39 shared
[2025-06-05 04:47:56] -rw-r--r--. 2 boinc boinc    508884 Jun  5 00:39 input.tar.gz
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:39 boinc_lockfile
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:39 pandaJob.out
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc    987032 Jun  5 00:40 agis_schedconf.cvmfs.json
[2025-06-05 04:47:56] drwx------. 4 boinc boinc      4096 Jun  5 00:40 pilot3
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc 180478066 Jun  5 04:32 HITS.45006595._053537.pool.root.1
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc       531 Jun  5 04:33 boinc_task_state.xml
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc      1018 Jun  5 04:34 memory_monitor_summary.json
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc   1598969 Jun  5 04:34 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc    374134 Jun  5 04:34 log.45006595._053537.job.log.tgz.1
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc        95 Jun  5 04:34 pilot_heartbeat.json
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc      7690 Jun  5 04:35 heartbeat.json
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc      4807 Jun  5 04:36 pilotlog.txt
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc   1217589 Jun  5 04:36 log.45006595._053537.job.log.1
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc       357 Jun  5 04:36 output.list
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:36 runtime_log
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc   1607680 Jun  5 04:36 result.tar.gz
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc      8659 Jun  5 04:36 runtime_log.err
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc       657 Jun  5 04:36 2KMNDmmtvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxPnKDm58b67m.diag
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc      8192 Jun  5 04:47 boinc_mmap_file
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc        28 Jun  5 04:47 wrapper_checkpoint.txt
[2025-06-05 04:47:56] -rw-r--r--. 1 boinc boinc     20556 Jun  5 04:47 stderr.txt
[2025-06-05 04:47:56] HITS file was successfully produced:
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc 180478066 Jun  5 04:32 shared/HITS.pool.root.1
[2025-06-05 04:47:56]  *** Contents of shared directory: ***
[2025-06-05 04:47:56] total 389268
[2025-06-05 04:47:56] -rw-r--r--. 2 boinc boinc 215986814 Jun  5 00:39 ATLAS.root_0
[2025-06-05 04:47:56] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:39 start_atlas.sh
[2025-06-05 04:47:56] -rw-r--r--. 2 boinc boinc    508884 Jun  5 00:39 input.tar.gz
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc 180478066 Jun  5 04:32 HITS.pool.root.1
[2025-06-05 04:47:56] -rw-------. 1 boinc boinc   1607680 Jun  5 04:36 result.tar.gz
04:47:58 (29722): run_atlas exited; CPU time 52205.429931
04:47:58 (29722): called boinc_finish(0)

</stderr_txt>
]]>

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