Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 17:19:13 (36440): Detected: vboxwrapper 26206
2025-06-05 17:19:13 (36440): Detected: BOINC client v8.0.2
2025-06-05 17:19:14 (36440): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-05 17:19:14 (36440): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 17:19:15 (36440): Create VM. (boinc_537b4f1f4bade10c, slot#0)
2025-06-05 17:19:16 (36440): Setting Memory Size for VM. (4800MB)
2025-06-05 17:19:16 (36440): Setting CPU Count for VM. (8)
2025-06-05 17:19:16 (36440): Setting Chipset Options for VM.
2025-06-05 17:19:16 (36440): Setting Graphics Controller Options for VM.
2025-06-05 17:19:17 (36440): Setting Boot Options for VM.
2025-06-05 17:19:17 (36440): Setting Network Configuration for NAT.
2025-06-05 17:19:17 (36440): Enabling VM Network Access.
2025-06-05 17:19:17 (36440): Disabling USB Support for VM.
2025-06-05 17:19:18 (36440): Disabling COM Port Support for VM.
2025-06-05 17:19:18 (36440): Disabling LPT Port Support for VM.
2025-06-05 17:19:18 (36440): Disabling Audio Support for VM.
2025-06-05 17:19:18 (36440): Disabling Clipboard Support for VM.
2025-06-05 17:19:19 (36440): Disabling Drag and Drop Support for VM.
2025-06-05 17:19:19 (36440): Adding storage controller(s) to VM.
2025-06-05 17:19:19 (36440): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 17:19:20 (36440): Adding VirtualBox Guest Additions to VM.
2025-06-05 17:19:20 (36440): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 17:19:20 (36440): forwarding host port 31198 to guest port 80
2025-06-05 17:19:21 (36440): Enabling remote desktop for VM.
2025-06-05 17:19:21 (36440): Required extension pack not installed, remote desktop not enabled.
2025-06-05 17:19:21 (36440): Enabling shared directory for VM.
2025-06-05 17:19:21 (36440): Starting VM using VBoxManage interface. (boinc_537b4f1f4bade10c, slot#0)
2025-06-05 17:19:31 (36440): Successfully started VM. (PID = '36676')
2025-06-05 17:19:31 (36440): Reporting VM Process ID to BOINC.
2025-06-05 17:19:31 (36440): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-05 17:19:31 (36440): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 17:19:31 (36440): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 17:19:31 (36440): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 17:19:31 (36440): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 17:19:31 (36440): Detected: Web Application Enabled (http://localhost:31198)
2025-06-05 17:19:31 (36440): Preference change detected
2025-06-05 17:19:31 (36440): Setting CPU throttle for VM. (25%)
2025-06-05 17:19:31 (36440): Setting checkpoint interval to 10000 seconds. (Higher value of (Preference: 10000 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 17:19:33 (36440): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 17:19:33 (36440): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 17:19:42 (36440): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 17:19:42 (36440): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 17:19:42 (36440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 17:20:00 (36440): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 17:20:00 (36440): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 17:20:25 (36440): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000218 main     Log opened 2025-06-05T17:20:23.943674000Z
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000459 main     OS Product: Linux
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000557 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000722 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000848 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000851 main     Process ID: 1369
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.000853 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 17:20:25 (36440): Guest Log: 00:00:00.003303 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 17:20:25 (36440): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 17:20:25 (36440): Guest Log: [INFO] Mounting shared directory
2025-06-05 17:20:25 (36440): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 17:20:34 (36440): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 17:20:34 (36440): Guest Log: [INFO] Detected branch: prod
2025-06-05 17:20:34 (36440): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 17:20:34 (36440): Guest Log: Copying input files
2025-06-05 17:20:35 (36440): Guest Log: 00:00:10.008270 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 154 170 000ns (GuestNow=1 749 165 635 104 790 000 ns GuestLast=1 749 144 023 950 620 000 ns fSetTimeLastLoop=true )
2025-06-05 17:20:39 (36440): Guest Log: Copied input files into RunAtlas.
2025-06-05 17:20:39 (36440): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 17:20:39 (36440): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 17:20:39 (36440): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 17:20:39 (36440): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 17:20:52 (36440): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 17:20:53 (36440): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 17:20:53 (36440): Guest Log: 2.6.3.0 1656 0 30184 146836 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 17:20:55 (36440): Guest Log: copied the webapp to /var/www
2025-06-05 17:20:55 (36440): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-05 17:20:55 (36440): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-05 17:20:55 (36440): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 17:20:56 (36440): Guest Log:  *** Starting ATLAS job. (PandaID=6678363215 taskID=45006595) ***
2025-06-05 17:58:51 (36440): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 17:59:11 (36440): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 18:59:54 (36440): Status Report: Elapsed Time: '6000.000000'
2025-06-05 18:59:54 (36440): Status Report: CPU Time: '6166.531250'
2025-06-05 20:39:56 (36440): Status Report: Elapsed Time: '12000.000000'
2025-06-05 20:39:56 (36440): Status Report: CPU Time: '20504.750000'
2025-06-05 22:19:58 (36440): Status Report: Elapsed Time: '18000.000000'
2025-06-05 22:19:58 (36440): Status Report: CPU Time: '34881.562500'
2025-06-06 00:00:00 (36440): Status Report: Elapsed Time: '24000.000000'
2025-06-06 00:00:00 (36440): Status Report: CPU Time: '49251.703125'
2025-06-06 01:40:02 (36440): Status Report: Elapsed Time: '30000.000000'
2025-06-06 01:40:02 (36440): Status Report: CPU Time: '63574.640625'
2025-06-06 01:48:38 (36440): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 01:48:39 (36440): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 03:20:07 (36440): Status Report: Elapsed Time: '36000.000000'
2025-06-06 03:20:07 (36440): Status Report: CPU Time: '77843.171875'
2025-06-06 05:00:09 (36440): Status Report: Elapsed Time: '42000.000000'
2025-06-06 05:00:09 (36440): Status Report: CPU Time: '92046.140625'
2025-06-06 05:36:26 (36440): Guest Log:  *** Job finished ***
2025-06-06 05:36:26 (36440): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:12,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:13,173 | INFO     | [job] queue monitor thread has finished
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:16,961 | INFO     | [data] queue_monitor thread has finished
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:17,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388259940160)>', '<ExcThread(monitor, started 140387280729856)>']
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:17,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:17,928 | INFO     | [monitor] control thread has ended
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:22,824 | INFO     | all workflow threads have been joined
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:22,824 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:22,825 | INFO     | traces error code: 0
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:22,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,381 [wrapper] ==== pilot stdout END ====
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,394 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,406 [wrapper] pilotpid: 6022
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,472 [wrapper] Pilot exit status: 0
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,587 [wrapper] pandaids: 6678363215
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,751 [wrapper] cleanup supervisor_pilot 11174 6023
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,771 [wrapper] Test setup, not cleaning
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,784 [wrapper] apfmon messages muted
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,794 [wrapper] ==== wrapper stdout END ====
2025-06-06 05:36:26 (36440): Guest Log: 2025-06-06 11:36:23,804 [wrapper] ==== wrapper stderr END ====
2025-06-06 05:36:26 (36440): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 05:36:26 (36440): Guest Log:     "exeErrorCode": 0,
2025-06-06 05:36:26 (36440): Guest Log:     "exeErrorDiag": "",
2025-06-06 05:36:26 (36440): Guest Log:     "pilotErrorCode": 0,
2025-06-06 05:36:26 (36440): Guest Log:     "pilotErrorDiag": "",
2025-06-06 05:36:26 (36440): Guest Log:  *** Listing of results directory ***
2025-06-06 05:36:26 (36440): Guest Log: total 185596
2025-06-06 05:36:26 (36440): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 04:58 pilot3.tar.gz
2025-06-06 05:36:26 (36440): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 05:17 runpilot2-wrapper.sh
2025-06-06 05:36:26 (36440): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 05:17 queuedata.json
2025-06-06 05:36:26 (36440): Guest Log: -rwxr-xr-x. 1 atlas atlas      9043 Jun  5 23:20 init_data.xml
2025-06-06 05:36:26 (36440): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 Jun  5 23:20 input.tar.gz
2025-06-06 05:36:26 (36440): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 23:20 start_atlas.sh
2025-06-06 05:36:26 (36440): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 23:20 EVNT.45006593._002131.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 05:36:26 (36440): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  5 23:20 pandaJob.out
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas    987721 Jun  5 23:22 agis_schedconf.cvmfs.json
2025-06-06 05:36:26 (36440): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 23:22 pilot3
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas 180710077 Jun  6 11:32 HITS.45006595._053255.pool.root.1
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  6 11:35 memory_monitor_summary.json
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 11:35 agis_ddmendpoints.agis.ALL.json
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas    550469 Jun  6 11:35 log.45006595._053255.job.log.tgz.1
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas        95 Jun  6 11:35 pilot_heartbeat.json
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas      7738 Jun  6 11:36 heartbeat.json
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  6 11:36 pilotlog.txt
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas   2232782 Jun  6 11:36 log.45006595._053255.job.log.1
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 11:36 output.list
2025-06-06 05:36:26 (36440): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 11:36 runtime_log
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas   2805760 Jun  6 11:36 result.tar.gz
2025-06-06 05:36:26 (36440): Guest Log: -rw-r--r--. 1 atlas atlas      8623 Jun  6 11:36 runtime_log.err
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas       670 Jun  6 11:36 b5wMDmwfvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFMnKDm5jRMkn.diag
2025-06-06 05:36:26 (36440): Guest Log: Looking for outputfile HITS.45006595._053255.pool.root.1
2025-06-06 05:36:26 (36440): Guest Log: HITS file was successfully produced
2025-06-06 05:36:26 (36440): Guest Log: -rw-------. 1 atlas atlas 180710077 Jun  6 11:32 /home/atlas/RunAtlas/HITS.45006595._053255.pool.root.1
2025-06-06 05:36:31 (36440): Guest Log: Successfully finished the ATLAS job!
2025-06-06 05:36:31 (36440): Guest Log: Copying the results back to the shared directory!
2025-06-06 05:36:31 (36440): Guest Log:  *** Contents of shared directory: ***
2025-06-06 05:36:31 (36440): Guest Log: total 390180
2025-06-06 05:36:31 (36440): Guest Log: -rwxrwxrwx. 1 root root 215486151 Jun  5 23:19 ATLAS.root_0
2025-06-06 05:36:31 (36440): Guest Log: -rwxrwxrwx. 1 root root 180710077 Jun  6 11:36 HITS.pool.root.1
2025-06-06 05:36:31 (36440): Guest Log: -rwxrwxrwx. 1 root root      9043 Jun  5 23:19 init_data.xml
2025-06-06 05:36:31 (36440): Guest Log: -rwxrwxrwx. 1 root root    508877 Jun  4 10:32 input.tar.gz
2025-06-06 05:36:31 (36440): Guest Log: -rwxrwxrwx. 1 root root   2805760 Jun  6 11:36 result.tar.gz
2025-06-06 05:36:31 (36440): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 10:32 start_atlas.sh
2025-06-06 05:36:31 (36440): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 05:36:31 (36440): VM Completion File Detected.
2025-06-06 05:36:31 (36440): Powering off VM.
2025-06-06 05:36:32 (36440): Successfully stopped VM.
2025-06-06 05:36:32 (36440): Deregistering VM. (boinc_537b4f1f4bade10c, slot#0)
2025-06-06 05:36:32 (36440): Removing network bandwidth throttle group from VM.
2025-06-06 05:36:32 (36440): Removing VM from VirtualBox.
05:36:38 (36440): called boinc_finish(0)

</stderr_txt>
]]>

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