Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:39:08 (5114): wrapper (7.7.26015): starting
20:39:08 (5114): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:39:08] Arguments: --nthreads 8
[2025-06-04 20:39:08] Threads: 8
[2025-06-04 20:39:08] Checking for CVMFS
[2025-06-04 20:39:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:39:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:39:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:39:10] 2.11.2.0 26199 33575 91976 146791 0 59 20604367 25165824 2748 130560 0 17325417 99.839 19288678 2076 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 20:39:10] CVMFS is ok
[2025-06-04 20:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:39:10] Checking for apptainer binary...
[2025-06-04 20:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:39:10] Running /usr/bin/apptainer --version
[2025-06-04 20:39:10] apptainer version 1.3.2-1.el7
[2025-06-04 20:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 21:09:45] cg-vwn248.simple-grid.lan
[2025-06-04 21:09:45] apptainer works
[2025-06-04 21:09:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 21:09:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 21:09:45] Starting ATLAS job with PandaID=6678362609
[2025-06-04 21:09:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:16:34]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:16:34] 2025-06-04 23:15:12,946 | INFO     | extracted standard info from prmon json
[2025-06-05 01:16:34] 2025-06-04 23:15:12,946 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:16:34] 2025-06-04 23:15:12,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:16:34] 2025-06-04 23:15:12,947 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:16:34] 2025-06-04 23:15:12,947 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:16:34] 2025-06-04 23:15:12,952 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:16:34] 2025-06-04 23:15:12,953 | INFO     | sum of square deviations: 3723716330.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,955 | INFO     | sum of deviations: 63155275301.99994
[2025-06-05 01:16:34] 2025-06-04 23:15:12,955 | INFO     | mean x: 1749071824.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,955 | INFO     | mean y: 2455918.965065502
[2025-06-05 01:16:34] 2025-06-04 23:15:12,955 | INFO     | -- intersect: -29662293696.29126
[2025-06-05 01:16:34] 2025-06-04 23:15:12,955 | INFO     | intersect: -29662293696.29126
[2025-06-05 01:16:34] 2025-06-04 23:15:12,955 | INFO     | chi2: 8.20924523803916
[2025-06-05 01:16:34] 2025-06-04 23:15:12,956 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,958 | INFO     | sum of deviations: 77063920682.00002
[2025-06-05 01:16:34] 2025-06-04 23:15:12,958 | INFO     | mean x: 1749071671.5
[2025-06-05 01:16:34] 2025-06-04 23:15:12,958 | INFO     | mean y: 2464636.3928571427
[2025-06-05 01:16:34] 2025-06-04 23:15:12,958 | INFO     | -- intersect: -38673832017.76083
[2025-06-05 01:16:34] 2025-06-04 23:15:12,958 | INFO     | intersect: -38673832017.76083
[2025-06-05 01:16:34] 2025-06-04 23:15:12,959 | INFO     | chi2: 7.5250540370416
[2025-06-05 01:16:34] 2025-06-04 23:15:12,959 | INFO     | current chi2=7.5250540370416 (change=8.334398366213062 %)
[2025-06-05 01:16:34] 2025-06-04 23:15:12,959 | INFO     | right removable region: 223
[2025-06-05 01:16:34] 2025-06-04 23:15:12,959 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,961 | INFO     | sum of deviations: -19103640016.500004
[2025-06-05 01:16:34] 2025-06-04 23:15:12,962 | INFO     | mean x: 1749071976.5
[2025-06-05 01:16:34] 2025-06-04 23:15:12,962 | INFO     | mean y: 2508464.3526785714
[2025-06-05 01:16:34] 2025-06-04 23:15:12,962 | INFO     | -- intersect: 9590110168.94181
[2025-06-05 01:16:34] 2025-06-04 23:15:12,962 | INFO     | intersect: 9590110168.94181
[2025-06-05 01:16:34] 2025-06-04 23:15:12,962 | INFO     | chi2: 2.9251645985837222
[2025-06-05 01:16:34] 2025-06-04 23:15:12,963 | INFO     | current chi2=2.9251645985837222 (change=64.36743557094148 %)
[2025-06-05 01:16:34] 2025-06-04 23:15:12,963 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,965 | INFO     | sum of deviations: -65927505092.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,965 | INFO     | mean x: 1749072129.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,965 | INFO     | mean y: 2539596.2557077627
[2025-06-05 01:16:34] 2025-06-04 23:15:12,965 | INFO     | -- intersect: 35408195737.958595
[2025-06-05 01:16:34] 2025-06-04 23:15:12,965 | INFO     | intersect: 35408195737.958595
[2025-06-05 01:16:34] 2025-06-04 23:15:12,966 | INFO     | chi2: 1.0356617640848007
[2025-06-05 01:16:34] 2025-06-04 23:15:12,966 | INFO     | current chi2=1.0356617640848007 (change=64.59475256242888 %)
[2025-06-05 01:16:34] 2025-06-04 23:15:12,966 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 01:16:34] 2025-06-04 23:15:12,968 | INFO     | sum of deviations: -67611232612.5
[2025-06-05 01:16:34] 2025-06-04 23:15:12,968 | INFO     | mean x: 1749072281.5
[2025-06-05 01:16:34] 2025-06-04 23:15:12,968 | INFO     | mean y: 2540720.5560747664
[2025-06-05 01:16:34] 2025-06-04 23:15:12,968 | INFO     | -- intersect: 38917479382.0853
[2025-06-05 01:16:34] 2025-06-04 23:15:12,969 | INFO     | intersect: 38917479382.0853
[2025-06-05 01:16:34] 2025-06-04 23:15:12,969 | INFO     | chi2: 0.9912032363603891
[2025-06-05 01:16:34] 2025-06-04 23:15:12,969 | INFO     | current chi2=0.9912032363603891 (change=4.292765192861877 %)
[2025-06-05 01:16:34] 2025-06-04 23:15:12,969 | INFO     | left removable region: 30
[2025-06-05 01:16:34] 2025-06-04 23:15:12,970 | INFO     | sum of square deviations: 2229146912.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,971 | INFO     | sum of deviations: -32582503156.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,971 | INFO     | mean x: 1749072556.0
[2025-06-05 01:16:34] 2025-06-04 23:15:12,971 | INFO     | mean y: 2536767.316062176
[2025-06-05 01:16:34] 2025-06-04 23:15:12,971 | INFO     | -- intersect: 25567994911.48659
[2025-06-05 01:16:34] 2025-06-04 23:15:12,971 | INFO     | intersect: 25567994911.48659
[2025-06-05 01:16:34] 2025-06-04 23:15:12,972 | INFO     | chi2: 0.17744036952310918
[2025-06-05 01:16:34] 2025-06-04 23:15:12,972 | INFO     | -- intersect: 25567994911.48659
[2025-06-05 01:16:34] 2025-06-04 23:15:12,972 | INFO     | current memory leak: -14.62 B/s (using 193 data points, chi2=0.18)
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | ..............................
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | . Timing measurements:
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | . get job = 0 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | . initial setup = 4 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | . payload setup = 141 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | . stage-in = 0 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,973 | INFO     | . payload execution = 14090 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,974 | INFO     | . stage-out = 3 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,974 | INFO     | . log creation = 1 s
[2025-06-05 01:16:34] 2025-06-04 23:15:12,974 | INFO     | ..............................
[2025-06-05 01:16:34] 2025-06-04 23:15:13,105 | INFO     | 
[2025-06-05 01:16:34] 2025-06-04 23:15:13,105 | INFO     | job summary report
[2025-06-05 01:16:34] 2025-06-04 23:15:13,105 | INFO     | --------------------------------------------------
[2025-06-05 01:16:34] 2025-06-04 23:15:13,105 | INFO     | PanDA job id: 6678362609
[2025-06-05 01:16:34] 2025-06-04 23:15:13,105 | INFO     | task id: 45006595
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | errors: (none)
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | pilot state: finished 
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | transexitcode: 0
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | exeerrorcode: 0
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | exeerrordiag: 
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | exitcode: 0
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | exitmsg: OK
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | cpuconsumptiontime: 52459 s
[2025-06-05 01:16:34] 2025-06-04 23:15:13,106 | INFO     | nevents: 400
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | neventsw: 0
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | pid: 7533
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | pgrp: 7533
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | corecount: 8
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | event service: False
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397371, 22: 2397399, 33: 2397427, 44: 2397483, 55: 2397639, 65: 2397667, 76: 2397695, 87: 2397751, 98: 2397779, 99: 2398293, 1
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | --------------------------------------------------
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | 
[2025-06-05 01:16:34] 2025-06-04 23:15:13,107 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:16:34] 2025-06-04 23:15:13,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:16:34] 2025-06-04 23:15:13,521 | INFO     | job 6678362609 has completed (purged errors)
[2025-06-05 01:16:34] 2025-06-04 23:15:13,521 | INFO     | overall cleanup function is called
[2025-06-05 01:16:34] 2025-06-04 23:15:14,530 | INFO     | --- collectZombieJob: --- 10, [7533]
[2025-06-05 01:16:34] 2025-06-04 23:15:14,530 | INFO     | zombie collector waiting for pid 7533
[2025-06-05 01:16:34] 2025-06-04 23:15:14,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:16:34] 2025-06-04 23:15:14,531 | INFO     | collected zombie processes
[2025-06-05 01:16:34] 2025-06-04 23:15:14,531 | INFO     | will attempt to kill all subprocesses of pid=7533
[2025-06-05 01:16:34] 2025-06-04 23:15:14,660 | INFO     | process IDs to be killed: [7533] (in reverse order)
[2025-06-05 01:16:34] 2025-06-04 23:15:15,603 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:16:34] 2025-06-04 23:15:15,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:16:34] 2025-06-04 23:15:15,607 | INFO     | did not find any defunct processes belonging to 7533
[2025-06-05 01:16:34] 2025-06-04 23:15:15,611 | INFO     | did not find any defunct processes belonging to 7533
[2025-06-05 01:16:34] 2025-06-04 23:15:15,611 | INFO     | ready for new job
[2025-06-05 01:16:34] 2025-06-04 23:15:15,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:16:34] 2025-06-04 23:15:15,614 | INFO     | **************************************
[2025-06-05 01:16:34] 2025-06-04 23:15:15,614 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:16:34] 2025-06-04 23:15:15,614 | INFO     | **************************************
[2025-06-05 01:16:34] 2025-06-04 23:15:15,614 | INFO     | 
[2025-06-05 01:16:34] 2025-06-04 23:15:15,615 | INFO     | pilot is running in a VM
[2025-06-05 01:16:34] 2025-06-04 23:15:15,615 | INFO     | architecture information:
[2025-06-05 01:16:34] 2025-06-04 23:15:15,631 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:16:34] 2025-06-04 23:15:15,934 | INFO     | cat /etc/os-release:
[2025-06-05 01:16:34] NAME="CentOS Linux"
[2025-06-05 01:16:34] VERSION="7 (Core)"
[2025-06-05 01:16:34] ID="centos"
[2025-06-05 01:16:34] ID_LIKE="rhel fedora"
[2025-06-05 01:16:34] VERSION_ID="7"
[2025-06-05 01:16:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:16:34] ANSI_COLOR="0;31"
[2025-06-05 01:16:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:16:34] HOME_URL="https://www.centos.org/"
[2025-06-05 01:16:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:16:34] 
[2025-06-05 01:16:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:16:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:16:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:16:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:16:34] 
[2025-06-05 01:16:34] 2025-06-04 23:15:15,934 | INFO     | **************************************
[2025-06-05 01:16:34] 2025-06-04 23:15:16,437 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-05 01:16:34] 2025-06-04 23:15:16,723 | INFO     | sufficient remaining disk space (497555603456 B)
[2025-06-05 01:16:34] 2025-06-04 23:15:16,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:16:34] 2025-06-04 23:15:16,724 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:16:34] 2025-06-04 23:15:16,724 | INFO     | update_server=False
[2025-06-05 01:16:34] 2025-06-04 23:15:16,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:16:34] 2025-06-04 23:15:16,725 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:16:34] 2025-06-04 23:15:16,726 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:16:34] 2025-06-04 23:15:16,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:16:34] 2025-06-04 23:15:16,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:16:34] 2025-06-04 23:15:16,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:16:34] 2025-06-04 23:15:16,734 | INFO     | aborting loop
[2025-06-05 01:16:34] 2025-06-04 23:15:16,893 | INFO     | all data control threads have been joined
[2025-06-05 01:16:34] 2025-06-04 23:15:16,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:16:34] 2025-06-04 23:15:17,248 | INFO     | all payload control threads have been joined
[2025-06-05 01:16:34] 2025-06-04 23:15:17,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:16:34] 2025-06-04 23:15:17,730 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:17,740 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:17,899 | INFO     | [data] control thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:17,928 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:16:34] 2025-06-04 23:15:18,130 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,133 | INFO     | [job] validate thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,209 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,254 | INFO     | [payload] control thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,376 | INFO     | all job control threads have been joined
[2025-06-05 01:16:34] 2025-06-04 23:15:18,454 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,508 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,690 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:18,882 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:19,007 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:19,125 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:19,382 | INFO     | [job] control thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:21,437 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:16:34] 2025-06-04 23:15:21,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903133869888)>', '<ExcThread(monitor, started 139902687622912)>']
[2025-06-05 01:16:34] 2025-06-04 23:15:21,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:16:34] 2025-06-04 23:15:21,755 | INFO     | [monitor] control thread has ended
[2025-06-05 01:16:34] 2025-06-04 23:15:26,642 | INFO     | all workflow threads have been joined
[2025-06-05 01:16:34] 2025-06-04 23:15:26,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:16:34] 2025-06-04 23:15:26,643 | INFO     | traces error code: 0
[2025-06-05 01:16:34] 2025-06-04 23:15:26,643 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:16:34] 2025-06-04 23:15:26,948 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:16:34] 2025-06-04 23:15:26,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:16:34] 2025-06-04 23:15:27,025 [wrapper] pilotpid: 27861
[2025-06-05 01:16:34] 2025-06-04 23:15:27,064 [wrapper] Pilot exit status: 0
[2025-06-05 01:16:34] 2025-06-04 23:15:27,501 [wrapper] pandaids: 6678362609
[2025-06-05 01:16:34] 2025-06-04 23:15:28,328 [wrapper] cleanup supervisor_pilot 25016 27862
[2025-06-05 01:16:34] 2025-06-04 23:15:28,430 [wrapper] Test setup, not cleaning
[2025-06-05 01:16:34] 2025-06-04 23:15:28,530 [wrapper] apfmon messages muted
[2025-06-05 01:16:34] 2025-06-04 23:15:28,652 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:16:34] 2025-06-04 23:15:28,760 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:16:34]  *** Error codes and diagnostics ***
[2025-06-05 01:16:34]     "exeErrorCode": 0,
[2025-06-05 01:16:34]     "exeErrorDiag": "",
[2025-06-05 01:16:34]     "pilotErrorCode": 0,
[2025-06-05 01:16:34]     "pilotErrorDiag": "",
[2025-06-05 01:16:34]  *** Listing of results directory ***
[2025-06-05 01:16:34] total 394728
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 01:16:34] -rwx------. 1 boinc boinc     37140 Jun  4 07:13 runpilot2-wrapper.sh
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:13 queuedata.json
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc       100 Jun  4 20:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:16:34] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 20:39 run_atlas
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc       105 Jun  4 20:39 job.xml
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc      6393 Jun  4 20:39 init_data.xml
[2025-06-05 01:16:34] -rw-r--r--. 2 boinc boinc 215964357 Jun  4 20:39 EVNT.45006593._002125.pool.root.1
[2025-06-05 01:16:34] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:39 start_atlas.sh
[2025-06-05 01:16:34] drwxrwx--x. 2 boinc boinc        68 Jun  4 20:39 shared
[2025-06-05 01:16:34] -rw-r--r--. 2 boinc boinc    508878 Jun  4 20:39 input.tar.gz
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc         0 Jun  4 20:39 boinc_lockfile
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc      2525 Jun  4 21:09 pandaJob.out
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc    990984 Jun  4 21:12 agis_schedconf.cvmfs.json
[2025-06-05 01:16:34] drwx------. 4 boinc boinc      4096 Jun  4 21:12 pilot3
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc 181147972 Jun  5 01:12 HITS.45006595._053104.pool.root.1
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc       531 Jun  5 01:12 boinc_task_state.xml
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc      1028 Jun  5 01:13 memory_monitor_summary.json
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc   1598969 Jun  5 01:13 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc    397670 Jun  5 01:13 log.45006595._053104.job.log.tgz.1
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc        95 Jun  5 01:14 pilot_heartbeat.json
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc      7698 Jun  5 01:15 heartbeat.json
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc      4540 Jun  5 01:15 pilotlog.txt
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc   1234668 Jun  5 01:15 log.45006595._053104.job.log.1
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc       357 Jun  5 01:15 output.list
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc       620 Jun  5 01:15 runtime_log
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc   1648640 Jun  5 01:15 result.tar.gz
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc      8673 Jun  5 01:15 runtime_log.err
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc       657 Jun  5 01:15 n4EODm0cvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQkaKDmpxVHKm.diag
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc      8192 Jun  5 01:16 boinc_mmap_file
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc        28 Jun  5 01:16 wrapper_checkpoint.txt
[2025-06-05 01:16:34] -rw-r--r--. 1 boinc boinc     20489 Jun  5 01:16 stderr.txt
[2025-06-05 01:16:34] HITS file was successfully produced:
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc 181147972 Jun  5 01:12 shared/HITS.pool.root.1
[2025-06-05 01:16:34]  *** Contents of shared directory: ***
[2025-06-05 01:16:34] total 389936
[2025-06-05 01:16:34] -rw-r--r--. 2 boinc boinc 215964357 Jun  4 20:39 ATLAS.root_0
[2025-06-05 01:16:34] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:39 start_atlas.sh
[2025-06-05 01:16:34] -rw-r--r--. 2 boinc boinc    508878 Jun  4 20:39 input.tar.gz
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc 181147972 Jun  5 01:12 HITS.pool.root.1
[2025-06-05 01:16:34] -rw-------. 1 boinc boinc   1648640 Jun  5 01:15 result.tar.gz
01:16:36 (5114): run_atlas exited; CPU time 52659.597525
01:16:36 (5114): called boinc_finish(0)

</stderr_txt>
]]>

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