Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:01:29 (1146558): wrapper (7.7.26015): starting
06:01:29 (1146558): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 06:01:29] Arguments: --nthreads 12
[2025-06-06 06:01:29] Threads: 12
[2025-06-06 06:01:29] Checking for CVMFS
[2025-06-06 06:01:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 06:01:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 06:01:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 06:01:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 06:01:33] 2.12.7.0 19605 4164 55360 146844 1 56 3715733 4096000 912 130560 0 2918908 99.989 1021481 181 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 06:01:33] CVMFS is ok
[2025-06-06 06:01:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 06:01:33] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 06:01:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 06:01:33] Further information can be found at the LHC@home message board.
[2025-06-06 06:01:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 06:01:33] Checking for apptainer binary...
[2025-06-06 06:01:33] apptainer is not installed, using version from CVMFS
[2025-06-06 06:01:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 06:01:36] g630
[2025-06-06 06:01:36] apptainer works
[2025-06-06 06:01:36] Set ATHENA_PROC_NUMBER=12
[2025-06-06 06:01:36] Set ATHENA_CORE_NUMBER=12
[2025-06-06 06:01:37] Starting ATLAS job with PandaID=6678363209
[2025-06-06 06:01:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:31:16]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:31:16] 2025-06-06 12:30:59,062 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678363209/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,063 | INFO     | extracted standard info from prmon json
[2025-06-06 12:31:16] 2025-06-06 12:30:59,063 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:31:16] 2025-06-06 12:30:59,063 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:31:16] 2025-06-06 12:30:59,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:31:16] 2025-06-06 12:30:59,066 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:31:16] 2025-06-06 12:30:59,070 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:31:16] 2025-06-06 12:30:59,086 | INFO     | sum of square deviations: 16615530851.90445
[2025-06-06 12:31:16] 2025-06-06 12:30:59,089 | INFO     | sum of deviations: 223017589287.70273
[2025-06-06 12:31:16] 2025-06-06 12:30:59,089 | INFO     | mean x: 1749201467.2917771
[2025-06-06 12:31:16] 2025-06-06 12:30:59,089 | INFO     | mean y: 2608489.129973475
[2025-06-06 12:31:16] 2025-06-06 12:30:59,089 | INFO     | -- intersect: -23475587777.419735
[2025-06-06 12:31:16] 2025-06-06 12:30:59,089 | INFO     | intersect: -23475587777.419735
[2025-06-06 12:31:16] 2025-06-06 12:30:59,089 | INFO     | chi2: 6.220202356212499
[2025-06-06 12:31:16] 2025-06-06 12:30:59,090 | INFO     | sum of square deviations: 15963217286.473051
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | sum of deviations: 245500231380.1616
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | mean x: 1749201314.795699
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | mean y: 2613680.9758064514
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | -- intersect: -26898562930.628532
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | intersect: -26898562930.628532
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | chi2: 5.530658928388281
[2025-06-06 12:31:16] 2025-06-06 12:30:59,108 | INFO     | current chi2=5.530658928388281 (change=11.085546551962716 %)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,109 | INFO     | right removable region: 371
[2025-06-06 12:31:16] 2025-06-06 12:30:59,109 | INFO     | sum of square deviations: 15963150186.473057
[2025-06-06 12:31:16] 2025-06-06 12:30:59,127 | INFO     | sum of deviations: 101248907734.56995
[2025-06-06 12:31:16] 2025-06-06 12:30:59,127 | INFO     | mean x: 1749201619.795699
[2025-06-06 12:31:16] 2025-06-06 12:30:59,127 | INFO     | mean y: 2636924.7311827955
[2025-06-06 12:31:16] 2025-06-06 12:30:59,127 | INFO     | -- intersect: -11091962283.00734
[2025-06-06 12:31:16] 2025-06-06 12:30:59,128 | INFO     | intersect: -11091962283.00734
[2025-06-06 12:31:16] 2025-06-06 12:30:59,128 | INFO     | chi2: 2.669841450035696
[2025-06-06 12:31:16] 2025-06-06 12:30:59,128 | INFO     | current chi2=2.669841450035696 (change=57.07790040995755 %)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,128 | INFO     | sum of square deviations: 15328072171.02984
[2025-06-06 12:31:16] 2025-06-06 12:30:59,146 | INFO     | sum of deviations: 28460194455.438763
[2025-06-06 12:31:16] 2025-06-06 12:30:59,146 | INFO     | mean x: 1749201772.2997274
[2025-06-06 12:31:16] 2025-06-06 12:30:59,147 | INFO     | mean y: 2654358.386920981
[2025-06-06 12:31:16] 2025-06-06 12:30:59,147 | INFO     | -- intersect: -3245152803.9213214
[2025-06-06 12:31:16] 2025-06-06 12:30:59,147 | INFO     | intersect: -3245152803.9213214
[2025-06-06 12:31:16] 2025-06-06 12:30:59,147 | INFO     | chi2: 1.3300133030814516
[2025-06-06 12:31:16] 2025-06-06 12:30:59,147 | INFO     | current chi2=1.3300133030814516 (change=50.183809489373644 %)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,147 | INFO     | sum of square deviations: 14710064243.074614
[2025-06-06 12:31:16] 2025-06-06 12:30:59,149 | INFO     | sum of deviations: -7556670047.883984
[2025-06-06 12:31:16] 2025-06-06 12:30:59,149 | INFO     | mean x: 1749201924.8038673
[2025-06-06 12:31:16] 2025-06-06 12:30:59,150 | INFO     | mean y: 2663245.917127072
[2025-06-06 12:31:16] 2025-06-06 12:30:59,150 | INFO     | -- intersect: 901241360.4953414
[2025-06-06 12:31:16] 2025-06-06 12:30:59,150 | INFO     | intersect: 901241360.4953414
[2025-06-06 12:31:16] 2025-06-06 12:30:59,166 | INFO     | chi2: 1.033010683714761
[2025-06-06 12:31:16] 2025-06-06 12:30:59,166 | INFO     | current chi2=1.033010683714761 (change=22.330800652788792 %)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,166 | INFO     | left removable region: 30
[2025-06-06 12:31:16] 2025-06-06 12:30:59,167 | INFO     | sum of square deviations: 12295710439.794718
[2025-06-06 12:31:16] 2025-06-06 12:30:59,168 | INFO     | sum of deviations: -28848547098.120243
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | mean x: 1749202199.3167155
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | mean y: 2681593.214076246
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | -- intersect: 4106709764.5188537
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | intersect: 4106709764.5188537
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | chi2: 0.03684505999659056
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | -- intersect: 4106709764.5188537
[2025-06-06 12:31:16] 2025-06-06 12:30:59,169 | INFO     | current memory leak: -2.35 B/s (using 341 data points, chi2=0.04)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,170 | INFO     | ..............................
[2025-06-06 12:31:16] 2025-06-06 12:30:59,170 | INFO     | . Timing measurements:
[2025-06-06 12:31:16] 2025-06-06 12:30:59,170 | INFO     | . get job = 0 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,170 | INFO     | . initial setup = 7 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,170 | INFO     | . payload setup = 102 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,170 | INFO     | . stage-in = 0 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,186 | INFO     | . payload execution = 23028 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,186 | INFO     | . stage-out = 4 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,186 | INFO     | . log creation = 1 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,186 | INFO     | ..............................
[2025-06-06 12:31:16] 2025-06-06 12:30:59,467 | INFO     | 
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | job summary report
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | --------------------------------------------------
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | PanDA job id: 6678363209
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | task id: 45006595
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | errors: (none)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | pilot state: finished 
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | transexitcode: 0
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | exeerrorcode: 0
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | exeerrordiag: 
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | exitcode: 0
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | exitmsg: OK
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | cpuconsumptiontime: 30904 s
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | nevents: 400
[2025-06-06 12:31:16] 2025-06-06 12:30:59,468 | INFO     | neventsw: 0
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | pid: 1156584
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | pgrp: 1156584
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | corecount: 12
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | event service: False
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | sizes: {0: 2397138, 1: 2397222, 2: 2397421, 13: 2397421, 23: 2397477, 34: 2397505, 39: 2397867, 45: 2397895, 23134: 2431888, 23135: 2431887, 23141: 2440930, 23142:
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | --------------------------------------------------
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | 
[2025-06-06 12:31:16] 2025-06-06 12:30:59,469 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 12:31:16] 2025-06-06 12:30:59,538 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,538 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,538 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,539 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,540 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,540 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,540 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:31:16] 2025-06-06 12:30:59,540 | INFO     | job 6678363209 has completed (purged errors)
[2025-06-06 12:31:16] 2025-06-06 12:30:59,540 | INFO     | overall cleanup function is called
[2025-06-06 12:31:16] 2025-06-06 12:31:00,546 | INFO     | --- collectZombieJob: --- 10, [1156584]
[2025-06-06 12:31:16] 2025-06-06 12:31:00,546 | INFO     | zombie collector waiting for pid 1156584
[2025-06-06 12:31:16] 2025-06-06 12:31:00,546 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:31:16] 2025-06-06 12:31:00,546 | INFO     | collected zombie processes
[2025-06-06 12:31:16] 2025-06-06 12:31:00,546 | INFO     | will attempt to kill all subprocesses of pid=1156584
[2025-06-06 12:31:16] 2025-06-06 12:31:00,758 | INFO     | process IDs to be killed: [1156584] (in reverse order)
[2025-06-06 12:31:16] 2025-06-06 12:31:00,802 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:31:16] 2025-06-06 12:31:00,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:31:16] 2025-06-06 12:31:00,804 | INFO     | did not find any defunct processes belonging to 1156584
[2025-06-06 12:31:16] 2025-06-06 12:31:00,805 | INFO     | did not find any defunct processes belonging to 1156584
[2025-06-06 12:31:16] 2025-06-06 12:31:00,805 | INFO     | ready for new job
[2025-06-06 12:31:16] 2025-06-06 12:31:00,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:31:16] 2025-06-06 12:31:00,819 | INFO     | **************************************
[2025-06-06 12:31:16] 2025-06-06 12:31:00,819 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:31:16] 2025-06-06 12:31:00,819 | INFO     | **************************************
[2025-06-06 12:31:16] 2025-06-06 12:31:00,819 | INFO     | 
[2025-06-06 12:31:16] 2025-06-06 12:31:00,846 | INFO     | architecture information:
[2025-06-06 12:31:16] 2025-06-06 12:31:00,894 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:31:16] 2025-06-06 12:31:01,278 | INFO     | cat /etc/os-release:
[2025-06-06 12:31:16] NAME="CentOS Linux"
[2025-06-06 12:31:16] VERSION="7 (Core)"
[2025-06-06 12:31:16] ID="centos"
[2025-06-06 12:31:16] ID_LIKE="rhel fedora"
[2025-06-06 12:31:16] VERSION_ID="7"
[2025-06-06 12:31:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:31:16] ANSI_COLOR="0;31"
[2025-06-06 12:31:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:31:16] HOME_URL="https://www.centos.org/"
[2025-06-06 12:31:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:31:16] 
[2025-06-06 12:31:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:31:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:31:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:31:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:31:16] 
[2025-06-06 12:31:16] 2025-06-06 12:31:01,278 | INFO     | **************************************
[2025-06-06 12:31:16] 2025-06-06 12:31:01,786 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 12:31:16] 2025-06-06 12:31:02,015 | INFO     | sufficient remaining disk space (181528428544 B)
[2025-06-06 12:31:16] 2025-06-06 12:31:02,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:31:16] 2025-06-06 12:31:02,015 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:31:16] 2025-06-06 12:31:02,015 | INFO     | update_server=False
[2025-06-06 12:31:16] 2025-06-06 12:31:02,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:31:16] 2025-06-06 12:31:02,015 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 12:31:16] 2025-06-06 12:31:02,016 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:31:16] 2025-06-06 12:31:02,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:31:16] 2025-06-06 12:31:02,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:31:16] 2025-06-06 12:31:02,037 | INFO     | all data control threads have been joined
[2025-06-06 12:31:16] 2025-06-06 12:31:02,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:31:16] 2025-06-06 12:31:02,274 | INFO     | aborting loop
[2025-06-06 12:31:16] 2025-06-06 12:31:03,018 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,031 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,042 | INFO     | [data] control thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,158 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,166 | INFO     | [job] validate thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,194 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,282 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,342 | INFO     | all payload control threads have been joined
[2025-06-06 12:31:16] 2025-06-06 12:31:03,390 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:03,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:31:16] 2025-06-06 12:31:03,760 | INFO     | all job control threads have been joined
[2025-06-06 12:31:16] 2025-06-06 12:31:03,914 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:04,050 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:04,150 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:04,350 | INFO     | [payload] control thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:04,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:31:16] 2025-06-06 12:31:04,766 | INFO     | [job] control thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:05,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:31:16] 2025-06-06 12:31:05,490 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:05,502 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:09,050 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:31:16] 2025-06-06 12:31:09,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139932338571072)>', '<ExcThread(monitor, started 139931745761024)>']
[2025-06-06 12:31:16] 2025-06-06 12:31:10,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:31:16] 2025-06-06 12:31:10,046 | INFO     | [monitor] control thread has ended
[2025-06-06 12:31:16] 2025-06-06 12:31:14,846 | INFO     | all workflow threads have been joined
[2025-06-06 12:31:16] 2025-06-06 12:31:14,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:31:16] 2025-06-06 12:31:14,846 | INFO     | traces error code: 0
[2025-06-06 12:31:16] 2025-06-06 12:31:14,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:31:16] 2025-06-06 12:31:15,570 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:31:16] 2025-06-06 12:31:15,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:31:16] 2025-06-06 12:31:15,766 [wrapper] pilotpid: 1150142
[2025-06-06 12:31:16] 2025-06-06 12:31:15,795 [wrapper] Pilot exit status: 0
[2025-06-06 12:31:16] 2025-06-06 12:31:16,014 [wrapper] pandaids: 6678363209
[2025-06-06 12:31:16] 2025-06-06 12:31:16,083 [wrapper] cleanup supervisor_pilot 1236026 1150143
[2025-06-06 12:31:16] 2025-06-06 12:31:16,266 [wrapper] Test setup, not cleaning
[2025-06-06 12:31:16] 2025-06-06 12:31:16,374 [wrapper] apfmon messages muted
[2025-06-06 12:31:16] 2025-06-06 12:31:16,403 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:31:16] 2025-06-06 12:31:16,431 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:31:16]  *** Error codes and diagnostics ***
[2025-06-06 12:31:16]     "exeErrorCode": 0,
[2025-06-06 12:31:16]     "exeErrorDiag": "",
[2025-06-06 12:31:16]     "pilotErrorCode": 0,
[2025-06-06 12:31:16]     "pilotErrorDiag": "",
[2025-06-06 12:31:16]  *** Listing of results directory ***
[2025-06-06 12:31:16] total 392292
[2025-06-06 12:31:16] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-06 12:31:16] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:17 queuedata.json
[2025-06-06 12:31:16] -rwx------ 1 boinc boinc     37140 Jun  4 05:18 runpilot2-wrapper.sh
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc       100 Jun  6 06:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:31:16] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 06:01 run_atlas
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc       105 Jun  6 06:01 job.xml
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc      9280 Jun  6 06:01 init_data.xml
[2025-06-06 12:31:16] -rw-r--r-- 2 boinc boinc 215486151 Jun  6 06:01 EVNT.45006593._002131.pool.root.1
[2025-06-06 12:31:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 06:01 start_atlas.sh
[2025-06-06 12:31:16] drwxrwx--x 2 boinc boinc      4096 Jun  6 06:01 shared
[2025-06-06 12:31:16] -rw-r--r-- 2 boinc boinc    508885 Jun  6 06:01 input.tar.gz
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc         0 Jun  6 06:01 boinc_lockfile
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc      2525 Jun  6 06:01 pandaJob.out
[2025-06-06 12:31:16] -rw------- 1 boinc boinc    988109 Jun  6 06:02 agis_schedconf.cvmfs.json
[2025-06-06 12:31:16] drwx------ 4 boinc boinc      4096 Jun  6 06:02 pilot3
[2025-06-06 12:31:16] -rw------- 1 boinc boinc 177031423 Jun  6 12:28 HITS.45006595._053249.pool.root.1
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc       530 Jun  6 12:28 boinc_task_state.xml
[2025-06-06 12:31:16] -rw------- 1 boinc boinc      1020 Jun  6 12:29 memory_monitor_summary.json
[2025-06-06 12:31:16] -rw------- 1 boinc boinc   1598969 Jun  6 12:29 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:31:16] -rw------- 1 boinc boinc    534138 Jun  6 12:29 log.45006595._053249.job.log.tgz.1
[2025-06-06 12:31:16] -rw------- 1 boinc boinc        95 Jun  6 12:30 pilot_heartbeat.json
[2025-06-06 12:31:16] -rw------- 1 boinc boinc      7658 Jun  6 12:30 heartbeat.json
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 12:31 boinc_mmap_file
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc        28 Jun  6 12:31 wrapper_checkpoint.txt
[2025-06-06 12:31:16] -rw------- 1 boinc boinc      4500 Jun  6 12:31 pilotlog.txt
[2025-06-06 12:31:16] -rw------- 1 boinc boinc   2139363 Jun  6 12:31 log.45006595._053249.job.log.1
[2025-06-06 12:31:16] -rw------- 1 boinc boinc       357 Jun  6 12:31 output.list
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc       620 Jun  6 12:31 runtime_log
[2025-06-06 12:31:16] -rw------- 1 boinc boinc   2693120 Jun  6 12:31 result.tar.gz
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc      8944 Jun  6 12:31 runtime_log.err
[2025-06-06 12:31:16] -rw------- 1 boinc boinc       651 Jun  6 12:31 3QfMDmvgvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmklaKDmZTowym.diag
[2025-06-06 12:31:16] -rw-rw-r-- 1 boinc boinc     21155 Jun  6 12:31 stderr.txt
[2025-06-06 12:31:16] HITS file was successfully produced:
[2025-06-06 12:31:16] -rw------- 1 boinc boinc 177031423 Jun  6 12:28 shared/HITS.pool.root.1
[2025-06-06 12:31:16]  *** Contents of shared directory: ***
[2025-06-06 12:31:16] total 386476
[2025-06-06 12:31:16] -rw-r--r-- 2 boinc boinc 215486151 Jun  6 06:01 ATLAS.root_0
[2025-06-06 12:31:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 06:01 start_atlas.sh
[2025-06-06 12:31:16] -rw-r--r-- 2 boinc boinc    508885 Jun  6 06:01 input.tar.gz
[2025-06-06 12:31:16] -rw------- 1 boinc boinc 177031423 Jun  6 12:28 HITS.pool.root.1
[2025-06-06 12:31:16] -rw------- 1 boinc boinc   2693120 Jun  6 12:31 result.tar.gz
12:31:18 (1146558): run_atlas exited; CPU time 31021.938564
12:31:18 (1146558): called boinc_finish(0)

</stderr_txt>
]]>

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