Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 20:41:23 (27924): Detected: vboxwrapper 26206
2025-06-04 20:41:23 (27924): Detected: BOINC client v8.0.2
2025-06-04 20:41:24 (27924): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-04 20:41:24 (27924): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 20:41:25 (27924): Create VM. (boinc_b709f325e9d9f584, slot#0)
2025-06-04 20:41:25 (27924): Setting Memory Size for VM. (4800MB)
2025-06-04 20:41:26 (27924): Setting CPU Count for VM. (8)
2025-06-04 20:41:26 (27924): Setting Chipset Options for VM.
2025-06-04 20:41:26 (27924): Setting Graphics Controller Options for VM.
2025-06-04 20:41:26 (27924): Setting Boot Options for VM.
2025-06-04 20:41:27 (27924): Setting Network Configuration for NAT.
2025-06-04 20:41:27 (27924): Enabling VM Network Access.
2025-06-04 20:41:27 (27924): Disabling USB Support for VM.
2025-06-04 20:41:28 (27924): Disabling COM Port Support for VM.
2025-06-04 20:41:28 (27924): Disabling LPT Port Support for VM.
2025-06-04 20:41:28 (27924): Disabling Audio Support for VM.
2025-06-04 20:41:28 (27924): Disabling Clipboard Support for VM.
2025-06-04 20:41:29 (27924): Disabling Drag and Drop Support for VM.
2025-06-04 20:41:29 (27924): Adding storage controller(s) to VM.
2025-06-04 20:41:29 (27924): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 20:41:30 (27924): Adding VirtualBox Guest Additions to VM.
2025-06-04 20:41:30 (27924): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 20:41:30 (27924): forwarding host port 16786 to guest port 80
2025-06-04 20:41:30 (27924): Enabling remote desktop for VM.
2025-06-04 20:41:31 (27924): Required extension pack not installed, remote desktop not enabled.
2025-06-04 20:41:31 (27924): Enabling shared directory for VM.
2025-06-04 20:41:31 (27924): Starting VM using VBoxManage interface. (boinc_b709f325e9d9f584, slot#0)
2025-06-04 20:41:41 (27924): Successfully started VM. (PID = '8676')
2025-06-04 20:41:41 (27924): Reporting VM Process ID to BOINC.
2025-06-04 20:41:41 (27924): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-04 20:41:41 (27924): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 20:41:41 (27924): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 20:41:41 (27924): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 20:41:41 (27924): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 20:41:41 (27924): Detected: Web Application Enabled (http://localhost:16786)
2025-06-04 20:41:41 (27924): Preference change detected
2025-06-04 20:41:41 (27924): Setting CPU throttle for VM. (25%)
2025-06-04 20:41:41 (27924): Setting checkpoint interval to 10000 seconds. (Higher value of (Preference: 10000 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 20:41:43 (27924): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 20:41:43 (27924): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 20:41:52 (27924): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 20:41:52 (27924): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 20:41:52 (27924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 20:42:08 (27924): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 20:42:08 (27924): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 20:42:30 (27924): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000267 main     Log opened 2025-06-04T20:42:29.068717000Z
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000537 main     OS Product: Linux
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000633 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000723 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000814 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000816 main     Process ID: 1366
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.000818 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 20:42:30 (27924): Guest Log: 00:00:00.003247 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 20:42:31 (27924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 20:42:31 (27924): Guest Log: [INFO] Mounting shared directory
2025-06-04 20:42:31 (27924): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 20:42:39 (27924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 20:42:39 (27924): Guest Log: [INFO] Detected branch: prod
2025-06-04 20:42:39 (27924): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 20:42:39 (27924): Guest Log: Copying input files
2025-06-04 20:42:40 (27924): Guest Log: 00:00:10.103398 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 036 853 000ns (GuestNow=1 749 091 360 207 811 000 ns GuestLast=1 749 069 749 170 958 000 ns fSetTimeLastLoop=true )
2025-06-04 20:42:44 (27924): Guest Log: Copied input files into RunAtlas.
2025-06-04 20:42:44 (27924): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 20:42:44 (27924): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 20:42:44 (27924): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 20:42:44 (27924): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 20:42:56 (27924): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 20:42:57 (27924): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 20:42:57 (27924): Guest Log: 2.6.3.0 1651 0 32052 146802 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 20:42:58 (27924): Guest Log: copied the webapp to /var/www
2025-06-04 20:42:58 (27924): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 20:42:58 (27924): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 20:42:59 (27924): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 20:42:59 (27924): Guest Log:  *** Starting ATLAS job. (PandaID=6678363642 taskID=45006595) ***
2025-06-04 21:38:53 (27924): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 21:39:13 (27924): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 22:18:53 (27924): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 22:19:14 (27924): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 22:22:31 (27924): Status Report: Elapsed Time: '6000.000000'
2025-06-04 22:22:31 (27924): Status Report: CPU Time: '5128.921875'
2025-06-05 00:02:57 (27924): Status Report: Elapsed Time: '12000.000000'
2025-06-05 00:02:57 (27924): Status Report: CPU Time: '19411.125000'
2025-06-05 01:43:26 (27924): Status Report: Elapsed Time: '18000.000000'
2025-06-05 01:43:26 (27924): Status Report: CPU Time: '33728.640625'
2025-06-05 03:23:55 (27924): Status Report: Elapsed Time: '24000.000000'
2025-06-05 03:23:55 (27924): Status Report: CPU Time: '48077.578125'
2025-06-05 04:01:44 (27924): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 04:02:04 (27924): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 05:04:30 (27924): Status Report: Elapsed Time: '30000.000000'
2025-06-05 05:04:30 (27924): Status Report: CPU Time: '62233.765625'
2025-06-05 06:28:51 (27924): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 06:29:11 (27924): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 06:44:23 (27924): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 06:44:44 (27924): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 06:45:17 (27924): Status Report: Elapsed Time: '36000.000000'
2025-06-05 06:45:17 (27924): Status Report: CPU Time: '76354.796875'
2025-06-05 07:15:31 (27924): Guest Log:  *** Job finished ***
2025-06-05 07:15:31 (27924): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:13:57,883 | INFO     | [data] copytool_out thread has finished
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:13:58,788 | INFO     | [job] queue monitor thread has finished
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:13:59,476 | INFO     | [data] queue_monitor thread has finished
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:13:59,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140392452613952)>', '<ExcThread(monitor, started 140391869310720)>']
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:00,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:00,510 | INFO     | [monitor] control thread has ended
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,491 | INFO     | all workflow threads have been joined
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,492 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,492 | INFO     | traces error code: 0
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,935 [wrapper] ==== pilot stdout END ====
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,946 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,956 [wrapper] pilotpid: 6008
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:04,967 [wrapper] Pilot exit status: 0
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:05,066 [wrapper] pandaids: 6678363642
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:05,157 [wrapper] cleanup supervisor_pilot  3337 6009
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:05,171 [wrapper] Test setup, not cleaning
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:05,182 [wrapper] apfmon messages muted
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:05,191 [wrapper] ==== wrapper stdout END ====
2025-06-05 07:15:31 (27924): Guest Log: 2025-06-05 13:14:05,200 [wrapper] ==== wrapper stderr END ====
2025-06-05 07:15:31 (27924): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 07:15:31 (27924): Guest Log:     "exeErrorCode": 0,
2025-06-05 07:15:31 (27924): Guest Log:     "exeErrorDiag": "",
2025-06-05 07:15:31 (27924): Guest Log:     "pilotErrorCode": 0,
2025-06-05 07:15:31 (27924): Guest Log:     "pilotErrorDiag": "",
2025-06-05 07:15:31 (27924): Guest Log:  *** Listing of results directory ***
2025-06-05 07:15:31 (27924): Guest Log: total 181804
2025-06-05 07:15:31 (27924): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 04:58 pilot3.tar.gz
2025-06-05 07:15:31 (27924): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 05:25 queuedata.json
2025-06-05 07:15:31 (27924): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 05:26 runpilot2-wrapper.sh
2025-06-05 07:15:31 (27924): Guest Log: -rwxr-xr-x. 1 atlas atlas      9041 Jun  5 02:42 init_data.xml
2025-06-05 07:15:31 (27924): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Jun  5 02:42 input.tar.gz
2025-06-05 07:15:31 (27924): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 02:42 start_atlas.sh
2025-06-05 07:15:31 (27924): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 02:42 EVNT.45006593._002142.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 07:15:31 (27924): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  5 02:42 pandaJob.out
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas    987109 Jun  5 02:44 agis_schedconf.cvmfs.json
2025-06-05 07:15:31 (27924): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 02:44 pilot3
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas 177520727 Jun  5 13:10 HITS.45006595._053517.pool.root.1
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas      1030 Jun  5 13:13 memory_monitor_summary.json
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 13:13 pilot_heartbeat.json
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 13:13 agis_ddmendpoints.agis.ALL.json
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas    493664 Jun  5 13:13 log.45006595._053517.job.log.tgz.1
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas      7728 Jun  5 13:13 heartbeat.json
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  5 13:14 pilotlog.txt
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas   1946711 Jun  5 13:14 log.45006595._053517.job.log.1
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 13:14 output.list
2025-06-05 07:15:31 (27924): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 13:14 runtime_log
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas   2457600 Jun  5 13:14 result.tar.gz
2025-06-05 07:15:31 (27924): Guest Log: -rw-r--r--. 1 atlas atlas      8623 Jun  5 13:14 runtime_log.err
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas       670 Jun  5 13:14 iYOODmtovg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOnaKDmud7uCo.diag
2025-06-05 07:15:31 (27924): Guest Log: Looking for outputfile HITS.45006595._053517.pool.root.1
2025-06-05 07:15:31 (27924): Guest Log: HITS file was successfully produced
2025-06-05 07:15:31 (27924): Guest Log: -rw-------. 1 atlas atlas 177520727 Jun  5 13:10 /home/atlas/RunAtlas/HITS.45006595._053517.pool.root.1
2025-06-05 07:15:35 (27924): Guest Log: Successfully finished the ATLAS job!
2025-06-05 07:15:35 (27924): Guest Log: Copying the results back to the shared directory!
2025-06-05 07:15:35 (27924): Guest Log:  *** Contents of shared directory: ***
2025-06-05 07:15:35 (27924): Guest Log: total 384284
2025-06-05 07:15:35 (27924): Guest Log: -rwxrwxrwx. 1 root root 212983196 Jun  5 02:41 ATLAS.root_0
2025-06-05 07:15:35 (27924): Guest Log: -rwxrwxrwx. 1 root root 177520727 Jun  5  2025 HITS.pool.root.1
2025-06-05 07:15:35 (27924): Guest Log: -rwxrwxrwx. 1 root root      9041 Jun  5 02:41 init_data.xml
2025-06-05 07:15:35 (27924): Guest Log: -rwxrwxrwx. 1 root root    508887 Jun  4 10:30 input.tar.gz
2025-06-05 07:15:35 (27924): Guest Log: -rwxrwxrwx. 1 root root   2457600 Jun  5  2025 result.tar.gz
2025-06-05 07:15:35 (27924): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 10:30 start_atlas.sh
2025-06-05 07:15:35 (27924): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 07:15:36 (27924): VM Completion File Detected.
2025-06-05 07:15:36 (27924): Powering off VM.
2025-06-05 07:15:37 (27924): Successfully stopped VM.
2025-06-05 07:15:37 (27924): Deregistering VM. (boinc_b709f325e9d9f584, slot#0)
2025-06-05 07:15:37 (27924): Removing network bandwidth throttle group from VM.
2025-06-05 07:15:37 (27924): Removing VM from VirtualBox.
07:15:42 (27924): called boinc_finish(0)

</stderr_txt>
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