Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:32:18 (2214807): wrapper (7.7.26015): starting
10:32:18 (2214807): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 10:32:18] Arguments: --nthreads 12
[2025-06-06 10:32:18] Threads: 12
[2025-06-06 10:32:18] Checking for CVMFS
[2025-06-06 10:32:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 10:32:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 10:32:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 10:32:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 10:32:19] 2.12.7.0 3695 2233 53340 146850 0 56 2151977 4096000 2736 130560 0 6109111 99.997 551367 135 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 10:32:19] CVMFS is ok
[2025-06-06 10:32:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 10:32:19] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 10:32:19] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 10:32:19] Further information can be found at the LHC@home message board.
[2025-06-06 10:32:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 10:32:19] Checking for apptainer binary...
[2025-06-06 10:32:19] apptainer is not installed, using version from CVMFS
[2025-06-06 10:32:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 10:32:20] dualxeon2
[2025-06-06 10:32:20] apptainer works
[2025-06-06 10:32:20] Set ATHENA_PROC_NUMBER=12
[2025-06-06 10:32:20] Set ATHENA_CORE_NUMBER=12
[2025-06-06 10:32:20] Starting ATLAS job with PandaID=6678363639
[2025-06-06 10:32:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:13:37]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:13:37] 2025-06-06 12:12:36,035 | INFO     | monitor loop #438: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:36,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:38,538 | INFO     | monitor loop #439: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:38,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:41,043 | INFO     | monitor loop #440: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:41,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:42,252 | INFO     | PID=2218560 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 12:13:37] 2025-06-06 12:12:42,253 | INFO     | .. there are 4 such processes running
[2025-06-06 12:13:37] 2025-06-06 12:12:43,555 | INFO     | monitor loop #441: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:43,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:46,058 | INFO     | monitor loop #442: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:46,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:48,561 | INFO     | monitor loop #443: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:48,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:51,067 | INFO     | monitor loop #444: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:51,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:53,570 | INFO     | monitor loop #445: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:53,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:56,073 | INFO     | monitor loop #446: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:56,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:12:58,576 | INFO     | monitor loop #447: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:12:58,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:01,079 | INFO     | monitor loop #448: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:01,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:03,583 | INFO     | monitor loop #449: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:03,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:04,652 | INFO     | PID=2218560 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 12:13:37] 2025-06-06 12:13:04,652 | INFO     | .. there are 4 such processes running
[2025-06-06 12:13:37] 2025-06-06 12:13:06,089 | INFO     | monitor loop #450: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:06,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:08,595 | INFO     | monitor loop #451: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:08,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:11,098 | INFO     | monitor loop #452: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:11,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:13,601 | INFO     | monitor loop #453: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:13,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,104 | INFO     | monitor loop #454: job 0:6678363639 is in state 'finished'
[2025-06-06 12:13:37] 2025-06-06 12:13:16,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,453 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 12:13:37] 2025-06-06 12:13:16,453 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6678363639/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,454 | INFO     | extracted standard info from prmon json
[2025-06-06 12:13:37] 2025-06-06 12:13:16,454 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:13:37] 2025-06-06 12:13:16,455 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:13:37] 2025-06-06 12:13:16,455 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:13:37] 2025-06-06 12:13:16,455 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:13:37] 2025-06-06 12:13:16,461 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:13:37] 2025-06-06 12:13:16,461 | INFO     | sum of square deviations: 233641590.0
[2025-06-06 12:13:37] 2025-06-06 12:13:16,462 | INFO     | sum of deviations: -954071903.0000004
[2025-06-06 12:13:37] 2025-06-06 12:13:16,462 | INFO     | mean x: 1749209048.0
[2025-06-06 12:13:37] 2025-06-06 12:13:16,462 | INFO     | mean y: 2674453.8021978023
[2025-06-06 12:13:37] 2025-06-06 12:13:16,462 | INFO     | -- intersect: 7145543174.949742
[2025-06-06 12:13:37] 2025-06-06 12:13:16,462 | INFO     | intersect: 7145543174.949742
[2025-06-06 12:13:37] 2025-06-06 12:13:16,463 | INFO     | chi2: 0.10791932868432935
[2025-06-06 12:13:37] 2025-06-06 12:13:16,463 | INFO     | -- intersect: 7145543174.949742
[2025-06-06 12:13:37] 2025-06-06 12:13:16,463 | INFO     | current memory leak: -4.08 B/s (using 91 data points, chi2=0.11)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | ..............................
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . Timing measurements:
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . get job = 0 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . initial setup = 3 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . payload setup = 13 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . stage-in = 0 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . payload execution = 5953 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,464 | INFO     | . stage-out = 1 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,465 | INFO     | . log creation = 0 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,468 | INFO     | ..............................
[2025-06-06 12:13:37] 2025-06-06 12:13:16,648 | INFO     | 
[2025-06-06 12:13:37] 2025-06-06 12:13:16,648 | INFO     | job summary report
[2025-06-06 12:13:37] 2025-06-06 12:13:16,648 | INFO     | --------------------------------------------------
[2025-06-06 12:13:37] 2025-06-06 12:13:16,648 | INFO     | PanDA job id: 6678363639
[2025-06-06 12:13:37] 2025-06-06 12:13:16,648 | INFO     | task id: 45006595
[2025-06-06 12:13:37] 2025-06-06 12:13:16,648 | INFO     | errors: (none)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | pilot state: finished 
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | transexitcode: 0
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | exeerrorcode: 0
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | exeerrordiag: 
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | exitcode: 0
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | exitmsg: OK
[2025-06-06 12:13:37] 2025-06-06 12:13:16,649 | INFO     | cpuconsumptiontime: 48497 s
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | nevents: 400
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | neventsw: 0
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | pid: 2225259
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | pgrp: 2225259
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | corecount: 12
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | event service: False
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | sizes: {0: 2397235, 1: 2397377, 8: 2397583, 12: 2397611, 5970: 2424078, 5972: 2433033, 5973: 2433217, 6020: 2433387}
[2025-06-06 12:13:37] 2025-06-06 12:13:16,650 | INFO     | --------------------------------------------------
[2025-06-06 12:13:37] 2025-06-06 12:13:16,651 | INFO     | 
[2025-06-06 12:13:37] 2025-06-06 12:13:16,651 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-06-06 12:13:37] 2025-06-06 12:13:16,675 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:13:37] 2025-06-06 12:13:16,680 | INFO     | job 6678363639 has completed (purged errors)
[2025-06-06 12:13:37] 2025-06-06 12:13:16,680 | INFO     | overall cleanup function is called
[2025-06-06 12:13:37] 2025-06-06 12:13:17,692 | INFO     | --- collectZombieJob: --- 10, [2225259]
[2025-06-06 12:13:37] 2025-06-06 12:13:17,692 | INFO     | zombie collector waiting for pid 2225259
[2025-06-06 12:13:37] 2025-06-06 12:13:17,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:13:37] 2025-06-06 12:13:17,693 | INFO     | collected zombie processes
[2025-06-06 12:13:37] 2025-06-06 12:13:17,693 | INFO     | will attempt to kill all subprocesses of pid=2225259
[2025-06-06 12:13:37] 2025-06-06 12:13:17,907 | INFO     | process IDs to be killed: [2225259] (in reverse order)
[2025-06-06 12:13:37] 2025-06-06 12:13:17,985 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:13:37] 2025-06-06 12:13:17,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:13:37] 2025-06-06 12:13:17,995 | INFO     | did not find any defunct processes belonging to 2225259
[2025-06-06 12:13:37] 2025-06-06 12:13:18,002 | INFO     | did not find any defunct processes belonging to 2225259
[2025-06-06 12:13:37] 2025-06-06 12:13:18,003 | INFO     | ready for new job
[2025-06-06 12:13:37] 2025-06-06 12:13:18,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:13:37] 2025-06-06 12:13:18,005 | INFO     | **************************************
[2025-06-06 12:13:37] 2025-06-06 12:13:18,005 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:13:37] 2025-06-06 12:13:18,005 | INFO     | **************************************
[2025-06-06 12:13:37] 2025-06-06 12:13:18,005 | INFO     | 
[2025-06-06 12:13:37] 2025-06-06 12:13:18,011 | INFO     | architecture information:
[2025-06-06 12:13:37] 2025-06-06 12:13:18,011 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:13:37] 2025-06-06 12:13:18,023 | INFO     | cat /etc/os-release:
[2025-06-06 12:13:37] NAME="CentOS Linux"
[2025-06-06 12:13:37] VERSION="7 (Core)"
[2025-06-06 12:13:37] ID="centos"
[2025-06-06 12:13:37] ID_LIKE="rhel fedora"
[2025-06-06 12:13:37] VERSION_ID="7"
[2025-06-06 12:13:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:13:37] ANSI_COLOR="0;31"
[2025-06-06 12:13:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:13:37] HOME_URL="https://www.centos.org/"
[2025-06-06 12:13:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:13:37] 
[2025-06-06 12:13:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:13:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:13:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:13:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:13:37] 
[2025-06-06 12:13:37] 2025-06-06 12:13:18,024 | INFO     | **************************************
[2025-06-06 12:13:37] 2025-06-06 12:13:18,526 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-06-06 12:13:37] 2025-06-06 12:13:18,552 | INFO     | sufficient remaining disk space (98540978176 B)
[2025-06-06 12:13:37] 2025-06-06 12:13:18,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:13:37] 2025-06-06 12:13:18,553 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:13:37] 2025-06-06 12:13:18,553 | INFO     | update_server=False
[2025-06-06 12:13:37] 2025-06-06 12:13:18,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:13:37] 2025-06-06 12:13:18,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:13:37] 2025-06-06 12:13:18,608 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 12:13:37] 2025-06-06 12:13:18,608 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 12:13:37] 2025-06-06 12:13:18,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:13:37] 2025-06-06 12:13:18,608 | INFO     | will abort loop
[2025-06-06 12:13:37] 2025-06-06 12:13:18,687 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:13:37] 2025-06-06 12:13:18,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:13:37] 2025-06-06 12:13:18,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:13:37] 2025-06-06 12:13:18,808 | INFO     | all payload control threads have been joined
[2025-06-06 12:13:37] 2025-06-06 12:13:19,171 | INFO     | all data control threads have been joined
[2025-06-06 12:13:37] 2025-06-06 12:13:19,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:13:37] 2025-06-06 12:13:19,559 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,560 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,617 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,672 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,680 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,680 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,813 | INFO     | [payload] control thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:19,921 | INFO     | all job control threads have been joined
[2025-06-06 12:13:37] 2025-06-06 12:13:19,988 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:20,176 | INFO     | [data] control thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:20,691 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:20,823 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:20,844 | INFO     | [job] validate thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:20,926 | INFO     | [job] control thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:21,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:13:37] 2025-06-06 12:13:21,519 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:25,430 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:29,177 | INFO     | job.realtimelogging is not enabled
[2025-06-06 12:13:37] 2025-06-06 12:13:30,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:13:37] 2025-06-06 12:13:31,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132629874833216)>', '<ExcThread(monitor, started 132629177292544)>']
[2025-06-06 12:13:37] 2025-06-06 12:13:32,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:13:37] 2025-06-06 12:13:32,761 | INFO     | [monitor] control thread has ended
[2025-06-06 12:13:37] 2025-06-06 12:13:36,995 | INFO     | all workflow threads have been joined
[2025-06-06 12:13:37] 2025-06-06 12:13:36,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:13:37] 2025-06-06 12:13:36,995 | INFO     | traces error code: 0
[2025-06-06 12:13:37] 2025-06-06 12:13:36,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:13:37] 2025-06-06 12:13:37,130 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:13:37] 2025-06-06 12:13:37,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:13:37] 2025-06-06 12:13:37,137 [wrapper] pilotpid: 2218560
[2025-06-06 12:13:37] 2025-06-06 12:13:37,143 [wrapper] Pilot exit status: 0
[2025-06-06 12:13:37] 2025-06-06 12:13:37,163 [wrapper] pandaids: 6678363639
[2025-06-06 12:13:37] 2025-06-06 12:13:37,222 [wrapper] cleanup supervisor_pilot 2313426 2218561
[2025-06-06 12:13:37] 2025-06-06 12:13:37,228 [wrapper] Test setup, not cleaning
[2025-06-06 12:13:37] 2025-06-06 12:13:37,233 [wrapper] apfmon messages muted
[2025-06-06 12:13:37] 2025-06-06 12:13:37,238 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:13:37] 2025-06-06 12:13:37,244 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:13:37]  *** Error codes and diagnostics ***
[2025-06-06 12:13:37]     "exeErrorCode": 0,
[2025-06-06 12:13:37]     "exeErrorDiag": "",
[2025-06-06 12:13:37]     "pilotErrorCode": 0,
[2025-06-06 12:13:37]     "pilotErrorDiag": "",
[2025-06-06 12:13:37]  *** Listing of results directory ***
[2025-06-06 12:13:37] total 388804
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:25 queuedata.json
[2025-06-06 12:13:37] -rwx------ 1 boinc boinc     37140 Jun  4 05:26 runpilot2-wrapper.sh
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc       100 Jun  6 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:13:37] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 10:32 run_atlas
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc       105 Jun  6 10:32 job.xml
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc      6557 Jun  6 10:32 init_data.xml
[2025-06-06 12:13:37] -rw-r--r-- 2 boinc boinc 212983196 Jun  6 10:32 EVNT.45006593._002142.pool.root.1
[2025-06-06 12:13:37] drwxrwx--x 2 boinc boinc      4096 Jun  6 10:32 shared
[2025-06-06 12:13:37] -rw-r--r-- 2 boinc boinc    508883 Jun  6 10:32 input.tar.gz
[2025-06-06 12:13:37] -rw-r--r-- 2 boinc boinc     15093 Jun  6 10:32 start_atlas.sh
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc         0 Jun  6 10:32 boinc_lockfile
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc      2525 Jun  6 10:32 pandaJob.out
[2025-06-06 12:13:37] -rw------- 1 boinc boinc    985686 Jun  6 10:32 agis_schedconf.cvmfs.json
[2025-06-06 12:13:37] -rw------- 1 boinc boinc   1598969 Jun  6 10:32 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:13:37] drwx------ 4 boinc boinc      4096 Jun  6 10:32 pilot3
[2025-06-06 12:13:37] -rw------- 1 boinc boinc 179435651 Jun  6 12:11 HITS.45006595._053514.pool.root.1
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc       529 Jun  6 12:12 boinc_task_state.xml
[2025-06-06 12:13:37] -rw------- 1 boinc boinc        95 Jun  6 12:12 pilot_heartbeat.json
[2025-06-06 12:13:37] -rw------- 1 boinc boinc      1022 Jun  6 12:12 memory_monitor_summary.json
[2025-06-06 12:13:37] -rw------- 1 boinc boinc    366781 Jun  6 12:12 log.45006595._053514.job.log.tgz.1
[2025-06-06 12:13:37] -rw------- 1 boinc boinc      7672 Jun  6 12:13 heartbeat.json
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc      8192 Jun  6 12:13 boinc_mmap_file
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc        27 Jun  6 12:13 wrapper_checkpoint.txt
[2025-06-06 12:13:37] -rw------- 1 boinc boinc      4618 Jun  6 12:13 pilotlog.txt
[2025-06-06 12:13:37] -rw------- 1 boinc boinc    580834 Jun  6 12:13 log.45006595._053514.job.log.1
[2025-06-06 12:13:37] -rw------- 1 boinc boinc       357 Jun  6 12:13 output.list
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc       620 Jun  6 12:13 runtime_log
[2025-06-06 12:13:37] -rw------- 1 boinc boinc    962560 Jun  6 12:13 result.tar.gz
[2025-06-06 12:13:37] -rw------- 1 boinc boinc       647 Jun  6 12:13 v0IODmtovg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLnaKDmuVtaOm.diag
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc      8726 Jun  6 12:13 runtime_log.err
[2025-06-06 12:13:37] -rw-r--r-- 1 boinc boinc     22477 Jun  6 12:13 stderr.txt
[2025-06-06 12:13:37] HITS file was successfully produced:
[2025-06-06 12:13:37] -rw------- 1 boinc boinc 179435651 Jun  6 12:11 shared/HITS.pool.root.1
[2025-06-06 12:13:37]  *** Contents of shared directory: ***
[2025-06-06 12:13:37] total 384684
[2025-06-06 12:13:37] -rw-r--r-- 2 boinc boinc 212983196 Jun  6 10:32 ATLAS.root_0
[2025-06-06 12:13:37] -rw-r--r-- 2 boinc boinc    508883 Jun  6 10:32 input.tar.gz
[2025-06-06 12:13:37] -rw-r--r-- 2 boinc boinc     15093 Jun  6 10:32 start_atlas.sh
[2025-06-06 12:13:37] -rw------- 1 boinc boinc 179435651 Jun  6 12:11 HITS.pool.root.1
[2025-06-06 12:13:37] -rw------- 1 boinc boinc    962560 Jun  6 12:13 result.tar.gz
12:13:38 (2214807): run_atlas exited; CPU time 48574.189227
12:13:38 (2214807): called boinc_finish(0)

</stderr_txt>
]]>

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