Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:35:28 (2585559): wrapper (7.7.26015): starting
16:35:28 (2585559): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 16:35:28] Arguments: --nthreads 12
[2025-06-06 16:35:28] Threads: 12
[2025-06-06 16:35:28] Checking for CVMFS
[2025-06-06 16:35:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 16:35:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 16:35:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 16:35:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 16:35:29] 2.12.7.0 3695 2596 53152 146868 0 187 2428273 4096001 2727 130560 0 7122167 99.997 637518 129 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 16:35:29] CVMFS is ok
[2025-06-06 16:35:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 16:35:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 16:35:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 16:35:29] Further information can be found at the LHC@home message board.
[2025-06-06 16:35:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 16:35:29] Checking for apptainer binary...
[2025-06-06 16:35:29] apptainer is not installed, using version from CVMFS
[2025-06-06 16:35:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 16:35:29] dualxeon2
[2025-06-06 16:35:29] apptainer works
[2025-06-06 16:35:29] Set ATHENA_PROC_NUMBER=12
[2025-06-06 16:35:29] Set ATHENA_CORE_NUMBER=12
[2025-06-06 16:35:29] Starting ATLAS job with PandaID=6678363715
[2025-06-06 16:35:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 18:03:08]  *** The last 200 lines of the pilot log: ***
[2025-06-06 18:03:08] 2025-06-06 18:02:16,327 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 18:03:08] 2025-06-06 18:02:16,327 | INFO     | log transfer has been attempted: DONE
[2025-06-06 18:03:08] 2025-06-06 18:02:16,327 | INFO     | job 6678363715 has finished - writing final server update
[2025-06-06 18:03:08] 2025-06-06 18:02:16,327 | INFO     | total number of processed events: 400 (read)
[2025-06-06 18:03:08] 2025-06-06 18:02:16,330 | INFO     | executing command: lscpu
[2025-06-06 18:03:08] 2025-06-06 18:02:16,361 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 18:03:08] 2025-06-06 18:02:16,990 | INFO     | monitor loop #387: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:16,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:19,493 | INFO     | monitor loop #388: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:19,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:21,997 | INFO     | monitor loop #389: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:21,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:24,500 | INFO     | monitor loop #390: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:24,501 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:27,004 | INFO     | monitor loop #391: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:27,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:29,507 | INFO     | monitor loop #392: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:29,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:29,729 | INFO     | PID=2589307 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 18:03:08] 2025-06-06 18:02:29,730 | INFO     | .. there are 3 such processes running
[2025-06-06 18:03:08] 2025-06-06 18:02:32,011 | INFO     | monitor loop #393: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:32,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:34,514 | INFO     | monitor loop #394: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:34,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:37,015 | INFO     | monitor loop #395: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:37,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:39,519 | INFO     | monitor loop #396: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:39,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:42,022 | INFO     | monitor loop #397: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:42,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:44,525 | INFO     | monitor loop #398: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:44,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:47,028 | INFO     | monitor loop #399: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:47,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:49,532 | INFO     | monitor loop #400: job 0:6678363715 is in state 'finished'
[2025-06-06 18:03:08] 2025-06-06 18:02:49,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 18:03:08] 2025-06-06 18:02:49,542 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 18:03:08] 2025-06-06 18:02:49,542 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6678363715/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 18:03:08] 2025-06-06 18:02:49,543 | INFO     | extracted standard info from prmon json
[2025-06-06 18:03:08] 2025-06-06 18:02:49,543 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 18:03:08] 2025-06-06 18:02:49,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 18:03:08] 2025-06-06 18:02:49,544 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 18:03:08] 2025-06-06 18:02:49,544 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 18:03:08] 2025-06-06 18:02:49,546 | INFO     | fitting pss+swap vs Time
[2025-06-06 18:03:08] 2025-06-06 18:02:49,546 | INFO     | sum of square deviations: 147126479.5
[2025-06-06 18:03:08] 2025-06-06 18:02:49,547 | INFO     | sum of deviations: -4979666253.000001
[2025-06-06 18:03:08] 2025-06-06 18:02:49,547 | INFO     | mean x: 1749230416.5
[2025-06-06 18:03:08] 2025-06-06 18:02:49,547 | INFO     | mean y: 2722492.205128205
[2025-06-06 18:03:08] 2025-06-06 18:02:49,547 | INFO     | -- intersect: 59207453709.64847
[2025-06-06 18:03:08] 2025-06-06 18:02:49,547 | INFO     | intersect: 59207453709.64847
[2025-06-06 18:03:08] 2025-06-06 18:02:49,548 | INFO     | chi2: 0.06672628538298811
[2025-06-06 18:03:08] 2025-06-06 18:02:49,548 | INFO     | -- intersect: 59207453709.64847
[2025-06-06 18:03:08] 2025-06-06 18:02:49,548 | INFO     | current memory leak: -33.85 B/s (using 78 data points, chi2=0.07)
[2025-06-06 18:03:08] 2025-06-06 18:02:49,548 | INFO     | ..............................
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . Timing measurements:
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . get job = 0 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . initial setup = 2 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . payload setup = 6 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . stage-in = 0 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . payload execution = 5170 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . stage-out = 0 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,549 | INFO     | . log creation = 0 s
[2025-06-06 18:03:08] 2025-06-06 18:02:49,550 | INFO     | ..............................
[2025-06-06 18:03:08] 2025-06-06 18:02:50,082 | INFO     | 
[2025-06-06 18:03:08] 2025-06-06 18:02:50,082 | INFO     | job summary report
[2025-06-06 18:03:08] 2025-06-06 18:02:50,082 | INFO     | --------------------------------------------------
[2025-06-06 18:03:08] 2025-06-06 18:02:50,082 | INFO     | PanDA job id: 6678363715
[2025-06-06 18:03:08] 2025-06-06 18:02:50,082 | INFO     | task id: 45006595
[2025-06-06 18:03:08] 2025-06-06 18:02:50,082 | INFO     | errors: (none)
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | pilot state: finished 
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | transexitcode: 0
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | exeerrorcode: 0
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | exeerrordiag: 
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | exitcode: 0
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | exitmsg: OK
[2025-06-06 18:03:08] 2025-06-06 18:02:50,083 | INFO     | cpuconsumptiontime: 45917 s
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | nevents: 400
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | neventsw: 0
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | pid: 2598089
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | pgrp: 2598089
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | corecount: 12
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | event service: False
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | sizes: {0: 2397178, 1: 2397377, 4: 2397583, 12: 2397611, 5180: 2432857, 5217: 2432971}
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | --------------------------------------------------
[2025-06-06 18:03:08] 2025-06-06 18:02:50,084 | INFO     | 
[2025-06-06 18:03:08] 2025-06-06 18:02:50,085 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-06-06 18:03:08] 2025-06-06 18:02:50,100 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 18:03:08] 2025-06-06 18:02:50,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 18:03:08] 2025-06-06 18:02:50,103 | INFO     | job 6678363715 has completed (purged errors)
[2025-06-06 18:03:08] 2025-06-06 18:02:50,103 | INFO     | overall cleanup function is called
[2025-06-06 18:03:08] 2025-06-06 18:02:51,112 | INFO     | --- collectZombieJob: --- 10, [2598089]
[2025-06-06 18:03:08] 2025-06-06 18:02:51,112 | INFO     | zombie collector waiting for pid 2598089
[2025-06-06 18:03:08] 2025-06-06 18:02:51,112 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 18:03:08] 2025-06-06 18:02:51,112 | INFO     | collected zombie processes
[2025-06-06 18:03:08] 2025-06-06 18:02:51,112 | INFO     | will attempt to kill all subprocesses of pid=2598089
[2025-06-06 18:03:08] 2025-06-06 18:02:51,204 | INFO     | process IDs to be killed: [2598089] (in reverse order)
[2025-06-06 18:03:08] 2025-06-06 18:02:51,237 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 18:03:08] 2025-06-06 18:02:51,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 18:03:08] 2025-06-06 18:02:51,239 | INFO     | did not find any defunct processes belonging to 2598089
[2025-06-06 18:03:08] 2025-06-06 18:02:51,242 | INFO     | did not find any defunct processes belonging to 2598089
[2025-06-06 18:03:08] 2025-06-06 18:02:51,242 | INFO     | ready for new job
[2025-06-06 18:03:08] 2025-06-06 18:02:51,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 18:03:08] 2025-06-06 18:02:51,243 | INFO     | **************************************
[2025-06-06 18:03:08] 2025-06-06 18:02:51,243 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 18:03:08] 2025-06-06 18:02:51,243 | INFO     | **************************************
[2025-06-06 18:03:08] 2025-06-06 18:02:51,243 | INFO     | 
[2025-06-06 18:03:08] 2025-06-06 18:02:51,244 | INFO     | architecture information:
[2025-06-06 18:03:08] 2025-06-06 18:02:51,245 | INFO     | executing command: cat /etc/os-release
[2025-06-06 18:03:08] 2025-06-06 18:02:51,252 | INFO     | cat /etc/os-release:
[2025-06-06 18:03:08] NAME="CentOS Linux"
[2025-06-06 18:03:08] VERSION="7 (Core)"
[2025-06-06 18:03:08] ID="centos"
[2025-06-06 18:03:08] ID_LIKE="rhel fedora"
[2025-06-06 18:03:08] VERSION_ID="7"
[2025-06-06 18:03:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 18:03:08] ANSI_COLOR="0;31"
[2025-06-06 18:03:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 18:03:08] HOME_URL="https://www.centos.org/"
[2025-06-06 18:03:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 18:03:08] 
[2025-06-06 18:03:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 18:03:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 18:03:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 18:03:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 18:03:08] 
[2025-06-06 18:03:08] 2025-06-06 18:02:51,253 | INFO     | **************************************
[2025-06-06 18:03:08] 2025-06-06 18:02:51,756 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-06 18:03:08] 2025-06-06 18:02:51,768 | INFO     | sufficient remaining disk space (101214846976 B)
[2025-06-06 18:03:08] 2025-06-06 18:02:51,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 18:03:08] 2025-06-06 18:02:51,769 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 18:03:08] 2025-06-06 18:02:51,769 | INFO     | update_server=False
[2025-06-06 18:03:08] 2025-06-06 18:02:51,769 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 18:03:08] 2025-06-06 18:02:51,769 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 18:03:08] 2025-06-06 18:02:51,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 18:03:08] 2025-06-06 18:02:51,927 | INFO     | PID=2589307 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 18:03:08] 2025-06-06 18:02:51,927 | INFO     | .. there are 3 such processes running
[2025-06-06 18:03:08] 2025-06-06 18:02:51,927 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 18:03:08] 2025-06-06 18:02:51,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 18:03:08] 2025-06-06 18:02:51,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 18:03:08] 2025-06-06 18:02:52,014 | INFO     | all data control threads have been joined
[2025-06-06 18:03:08] 2025-06-06 18:02:52,035 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 18:03:08] 2025-06-06 18:02:52,035 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 18:03:08] 2025-06-06 18:02:52,036 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:03:08] 2025-06-06 18:02:52,036 | INFO     | will abort loop
[2025-06-06 18:03:08] 2025-06-06 18:02:52,775 | INFO     | [job] retrieve thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:52,797 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:52,809 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:52,860 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:53,020 | INFO     | [data] control thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:53,041 | INFO     | [job] job monitor thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:53,103 | INFO     | all job control threads have been joined
[2025-06-06 18:03:08] 2025-06-06 18:02:53,247 | INFO     | all payload control threads have been joined
[2025-06-06 18:03:08] 2025-06-06 18:02:53,584 | INFO     | [data] copytool_in thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:53,775 | INFO     | [data] copytool_out thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:53,919 | INFO     | [job] validate thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:53,922 | INFO     | [payload] validate_post thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:54,023 | INFO     | [payload] failed_post thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:54,109 | INFO     | [job] control thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:54,253 | INFO     | [payload] control thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:54,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 18:03:08] 2025-06-06 18:02:55,641 | INFO     | [job] queue monitor thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:02:55,776 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:03:02,478 | INFO     | job.realtimelogging is not enabled
[2025-06-06 18:03:08] 2025-06-06 18:03:03,483 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 18:03:08] 2025-06-06 18:03:03,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124750526592832)>', '<ExcThread(monitor, started 124749984286464)>']
[2025-06-06 18:03:08] 2025-06-06 18:03:03,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 18:03:08] 2025-06-06 18:03:03,988 | INFO     | [monitor] control thread has ended
[2025-06-06 18:03:08] 2025-06-06 18:03:08,756 | INFO     | all workflow threads have been joined
[2025-06-06 18:03:08] 2025-06-06 18:03:08,756 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 18:03:08] 2025-06-06 18:03:08,757 | INFO     | traces error code: 0
[2025-06-06 18:03:08] 2025-06-06 18:03:08,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 18:03:08] 2025-06-06 18:03:08,846 [wrapper] ==== pilot stdout END ====
[2025-06-06 18:03:08] 2025-06-06 18:03:08,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 18:03:08] 2025-06-06 18:03:08,851 [wrapper] pilotpid: 2589307
[2025-06-06 18:03:08] 2025-06-06 18:03:08,853 [wrapper] Pilot exit status: 0
[2025-06-06 18:03:08] 2025-06-06 18:03:08,861 [wrapper] pandaids: 6678363715
[2025-06-06 18:03:08] 2025-06-06 18:03:08,882 [wrapper] cleanup supervisor_pilot 2645255 2589308
[2025-06-06 18:03:08] 2025-06-06 18:03:08,884 [wrapper] Test setup, not cleaning
[2025-06-06 18:03:08] 2025-06-06 18:03:08,886 [wrapper] apfmon messages muted
[2025-06-06 18:03:08] 2025-06-06 18:03:08,888 [wrapper] ==== wrapper stdout END ====
[2025-06-06 18:03:08] 2025-06-06 18:03:08,890 [wrapper] ==== wrapper stderr END ====
[2025-06-06 18:03:08]  *** Error codes and diagnostics ***
[2025-06-06 18:03:08]     "exeErrorCode": 0,
[2025-06-06 18:03:08]     "exeErrorDiag": "",
[2025-06-06 18:03:08]     "pilotErrorCode": 0,
[2025-06-06 18:03:08]     "pilotErrorDiag": "",
[2025-06-06 18:03:08]  *** Listing of results directory ***
[2025-06-06 18:03:08] total 390432
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-06 18:03:08] -rwx------ 1 boinc boinc     37140 Jun  4 05:31 runpilot2-wrapper.sh
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:31 queuedata.json
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc       100 Jun  6 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 18:03:08] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 16:35 run_atlas
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc       105 Jun  6 16:35 job.xml
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc      6558 Jun  6 16:35 init_data.xml
[2025-06-06 18:03:08] -rw-r--r-- 2 boinc boinc 215831549 Jun  6 16:35 EVNT.45006593._002145.pool.root.1
[2025-06-06 18:03:08] drwxrwx--x 2 boinc boinc      4096 Jun  6 16:35 shared
[2025-06-06 18:03:08] -rw-r--r-- 2 boinc boinc    508879 Jun  6 16:35 input.tar.gz
[2025-06-06 18:03:08] -rw-r--r-- 2 boinc boinc     15093 Jun  6 16:35 start_atlas.sh
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc         0 Jun  6 16:35 boinc_lockfile
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc      2525 Jun  6 16:35 pandaJob.out
[2025-06-06 18:03:08] -rw------- 1 boinc boinc    985748 Jun  6 16:35 agis_schedconf.cvmfs.json
[2025-06-06 18:03:08] -rw------- 1 boinc boinc   1598969 Jun  6 16:35 agis_ddmendpoints.agis.ALL.json
[2025-06-06 18:03:08] drwx------ 4 boinc boinc      4096 Jun  6 16:35 pilot3
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc       529 Jun  6 18:01 boinc_task_state.xml
[2025-06-06 18:03:08] -rw------- 1 boinc boinc 178392079 Jun  6 18:01 HITS.45006595._053590.pool.root.1
[2025-06-06 18:03:08] -rw------- 1 boinc boinc        95 Jun  6 18:02 pilot_heartbeat.json
[2025-06-06 18:03:08] -rw------- 1 boinc boinc      1021 Jun  6 18:02 memory_monitor_summary.json
[2025-06-06 18:03:08] -rw------- 1 boinc boinc    361402 Jun  6 18:02 log.45006595._053590.job.log.tgz.1
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc      8192 Jun  6 18:02 boinc_mmap_file
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc        27 Jun  6 18:02 wrapper_checkpoint.txt
[2025-06-06 18:03:08] -rw------- 1 boinc boinc      7675 Jun  6 18:02 heartbeat.json
[2025-06-06 18:03:08] -rw------- 1 boinc boinc      5013 Jun  6 18:03 pilotlog.txt
[2025-06-06 18:03:08] -rw------- 1 boinc boinc    516029 Jun  6 18:03 log.45006595._053590.job.log.1
[2025-06-06 18:03:08] -rw------- 1 boinc boinc       357 Jun  6 18:03 output.list
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc       620 Jun  6 18:03 runtime_log
[2025-06-06 18:03:08] -rw------- 1 boinc boinc    890880 Jun  6 18:03 result.tar.gz
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc      8726 Jun  6 18:03 runtime_log.err
[2025-06-06 18:03:08] -rw------- 1 boinc boinc       646 Jun  6 18:03 dGZKDmctvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOPnKDmo0rTwm.diag
[2025-06-06 18:03:08] -rw-r--r-- 1 boinc boinc     22438 Jun  6 18:03 stderr.txt
[2025-06-06 18:03:08] HITS file was successfully produced:
[2025-06-06 18:03:08] -rw------- 1 boinc boinc 178392079 Jun  6 18:01 shared/HITS.pool.root.1
[2025-06-06 18:03:08]  *** Contents of shared directory: ***
[2025-06-06 18:03:08] total 386380
[2025-06-06 18:03:08] -rw-r--r-- 2 boinc boinc 215831549 Jun  6 16:35 ATLAS.root_0
[2025-06-06 18:03:08] -rw-r--r-- 2 boinc boinc    508879 Jun  6 16:35 input.tar.gz
[2025-06-06 18:03:08] -rw-r--r-- 2 boinc boinc     15093 Jun  6 16:35 start_atlas.sh
[2025-06-06 18:03:08] -rw------- 1 boinc boinc 178392079 Jun  6 18:01 HITS.pool.root.1
[2025-06-06 18:03:08] -rw------- 1 boinc boinc    890880 Jun  6 18:03 result.tar.gz
18:03:10 (2585559): run_atlas exited; CPU time 45992.508040
18:03:10 (2585559): called boinc_finish(0)

</stderr_txt>
]]>

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