Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:24:27 (920635): wrapper (7.7.26015): starting
19:24:27 (920635): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 19:24:27] Arguments: --nthreads 12
[2025-06-04 19:24:27] Threads: 12
[2025-06-04 19:24:27] Checking for CVMFS
[2025-06-04 19:24:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:24:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:26:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:26:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:26:42] 2.12.7.0 9268 8734 182984 146789 2 258 42408385 46080001 41945 130560 0 55749492 99.939 10544847 19813 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-04 19:26:42] CVMFS is ok
[2025-06-04 19:26:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 19:26:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 19:26:42] Further information can be found at the LHC@home message board.
[2025-06-04 19:26:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:26:42] Checking for apptainer binary...
[2025-06-04 19:26:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:26:42] Running /usr/bin/apptainer --version
[2025-06-04 19:26:43] apptainer version 1.4.1-1.el9
[2025-06-04 19:26:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:26:43] mff2104.farm.particle.cz
[2025-06-04 19:26:43] apptainer works
[2025-06-04 19:26:43] Set ATHENA_PROC_NUMBER=12
[2025-06-04 19:26:43] Set ATHENA_CORE_NUMBER=12
[2025-06-04 19:26:44] Starting ATLAS job with PandaID=6678363257
[2025-06-04 19:26:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:14:10]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:14:10] 2025-06-04 19:13:22,533 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6678363257/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,535 | INFO     | extracted standard info from prmon json
[2025-06-04 21:14:10] 2025-06-04 19:13:22,535 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:14:10] 2025-06-04 19:13:22,535 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:14:10] 2025-06-04 19:13:22,535 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:14:10] 2025-06-04 19:13:22,545 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:14:10] 2025-06-04 19:13:22,547 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:14:10] 2025-06-04 19:13:22,548 | INFO     | sum of square deviations: 310051654.9899992
[2025-06-04 21:14:10] 2025-06-04 19:13:22,548 | INFO     | sum of deviations: 31409257161.460014
[2025-06-04 21:14:10] 2025-06-04 19:13:22,548 | INFO     | mean x: 1749061307.51
[2025-06-04 21:14:10] 2025-06-04 19:13:22,548 | INFO     | mean y: 2521231.54
[2025-06-04 21:14:10] 2025-06-04 19:13:22,549 | INFO     | -- intersect: -177183168683.62296
[2025-06-04 21:14:10] 2025-06-04 19:13:22,549 | INFO     | intersect: -177183168683.62296
[2025-06-04 21:14:10] 2025-06-04 19:13:22,549 | INFO     | chi2: 5.218619760305927
[2025-06-04 21:14:10] 2025-06-04 19:13:22,549 | INFO     | sum of square deviations: 265827874.98947364
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | sum of deviations: 36844803159.263176
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | mean x: 1749061155.0105264
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | mean y: 2538955.736842105
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | -- intersect: -242424309516.90063
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | intersect: -242424309516.90063
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | chi2: 4.443611219055071
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | current chi2=4.443611219055071 (change=14.850833684909507 %)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | right removable region: 94
[2025-06-04 21:14:10] 2025-06-04 19:13:22,550 | INFO     | sum of square deviations: 265827264.98947364
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | sum of deviations: 46433370.48421383
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | mean x: 1749061460.0105264
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | mean y: 2628915.515789474
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | -- intersect: -302888348.7706438
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | intersect: -302888348.7706438
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | chi2: 1.3717471775039467
[2025-06-04 21:14:10] 2025-06-04 19:13:22,551 | INFO     | current chi2=1.3717471775039467 (change=73.71436815654238 %)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,552 | INFO     | sum of square deviations: 226021562.4888887
[2025-06-04 21:14:10] 2025-06-04 19:13:22,552 | INFO     | sum of deviations: -10325847369.577778
[2025-06-04 21:14:10] 2025-06-04 19:13:22,552 | INFO     | mean x: 1749061612.511111
[2025-06-04 21:14:10] 2025-06-04 19:13:22,552 | INFO     | mean y: 2668149.577777778
[2025-06-04 21:14:10] 2025-06-04 19:13:22,552 | INFO     | -- intersect: 79908952540.76361
[2025-06-04 21:14:10] 2025-06-04 19:13:22,552 | INFO     | intersect: 79908952540.76361
[2025-06-04 21:14:10] 2025-06-04 19:13:22,558 | INFO     | chi2: 0.8877408777230743
[2025-06-04 21:14:10] 2025-06-04 19:13:22,558 | INFO     | current chi2=0.8877408777230743 (change=35.28392897163295 %)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,558 | INFO     | sum of square deviations: 190401984.98823565
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | sum of deviations: -9682813794.435295
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | mean x: 1749061765.0117648
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | mean y: 2665342.435294118
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | -- intersect: 88950474298.42738
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | intersect: 88950474298.42738
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | chi2: 0.8887061678239676
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | current chi2=0.8887061678239676 (change=-0.10873556970465632 %)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,559 | INFO     | left removable region: 30
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | sum of square deviations: 81264505.984375
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | sum of deviations: -385626814.640625
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | mean x: 1749062039.515625
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | mean y: 2677859.140625
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | -- intersect: 8302552629.030088
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | intersect: 8302552629.030088
[2025-06-04 21:14:10] 2025-06-04 19:13:22,560 | INFO     | chi2: 0.006100746897239466
[2025-06-04 21:14:10] 2025-06-04 19:13:22,561 | INFO     | -- intersect: 8302552629.030088
[2025-06-04 21:14:10] 2025-06-04 19:13:22,561 | INFO     | current memory leak: -4.75 B/s (using 64 data points, chi2=0.01)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,561 | INFO     | ..............................
[2025-06-04 21:14:10] 2025-06-04 19:13:22,561 | INFO     | . Timing measurements:
[2025-06-04 21:14:10] 2025-06-04 19:13:22,561 | INFO     | . get job = 0 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,561 | INFO     | . initial setup = 4 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,566 | INFO     | . payload setup = 70 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,566 | INFO     | . stage-in = 0 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,566 | INFO     | . payload execution = 6112 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,566 | INFO     | . stage-out = 2 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,566 | INFO     | . log creation = 0 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,566 | INFO     | ..............................
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | 
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | job summary report
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | --------------------------------------------------
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | PanDA job id: 6678363257
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | task id: 45006595
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | errors: (none)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | pilot state: finished 
[2025-06-04 21:14:10] 2025-06-04 19:13:22,765 | INFO     | transexitcode: 0
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | exeerrorcode: 0
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | exeerrordiag: 
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | exitcode: 0
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | exitmsg: OK
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | cpuconsumptiontime: 35109 s
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | nevents: 400
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | neventsw: 0
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | pid: 999093
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | pgrp: 999093
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | corecount: 12
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | event service: False
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | sizes: {0: 2397172, 1: 2397371, 12: 2397371, 23: 2397399, 33: 2397427, 40: 2397689, 44: 2397845, 6187: 2424511, 6190: 2433666, 6230: 2433780}
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | --------------------------------------------------
[2025-06-04 21:14:10] 2025-06-04 19:13:22,766 | INFO     | 
[2025-06-04 21:14:10] 2025-06-04 19:13:22,767 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-06-04 21:14:10] 2025-06-04 19:13:22,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,926 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | job 6678363257 has completed (purged errors)
[2025-06-04 21:14:10] 2025-06-04 19:13:22,927 | INFO     | overall cleanup function is called
[2025-06-04 21:14:10] 2025-06-04 19:13:23,938 | INFO     | --- collectZombieJob: --- 10, [999093]
[2025-06-04 21:14:10] 2025-06-04 19:13:23,938 | INFO     | zombie collector waiting for pid 999093
[2025-06-04 21:14:10] 2025-06-04 19:13:23,938 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:14:10] 2025-06-04 19:13:23,938 | INFO     | collected zombie processes
[2025-06-04 21:14:10] 2025-06-04 19:13:23,938 | INFO     | will attempt to kill all subprocesses of pid=999093
[2025-06-04 21:14:10] 2025-06-04 19:13:25,102 | INFO     | process IDs to be killed: [999093] (in reverse order)
[2025-06-04 21:14:10] 2025-06-04 19:13:25,942 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:14:10] 2025-06-04 19:13:25,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:14:10] 2025-06-04 19:13:26,006 | INFO     | did not find any defunct processes belonging to 999093
[2025-06-04 21:14:10] 2025-06-04 19:13:26,066 | INFO     | did not find any defunct processes belonging to 999093
[2025-06-04 21:14:10] 2025-06-04 19:13:26,073 | INFO     | ready for new job
[2025-06-04 21:14:10] 2025-06-04 19:13:26,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:14:10] 2025-06-04 19:13:26,075 | INFO     | **************************************
[2025-06-04 21:14:10] 2025-06-04 19:13:26,075 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:14:10] 2025-06-04 19:13:26,075 | INFO     | **************************************
[2025-06-04 21:14:10] 2025-06-04 19:13:26,075 | INFO     | 
[2025-06-04 21:14:10] 2025-06-04 19:13:26,087 | INFO     | architecture information:
[2025-06-04 21:14:10] 2025-06-04 19:13:26,088 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:14:10] 2025-06-04 19:13:26,176 | INFO     | cat /etc/os-release:
[2025-06-04 21:14:10] NAME="CentOS Linux"
[2025-06-04 21:14:10] VERSION="7 (Core)"
[2025-06-04 21:14:10] ID="centos"
[2025-06-04 21:14:10] ID_LIKE="rhel fedora"
[2025-06-04 21:14:10] VERSION_ID="7"
[2025-06-04 21:14:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:14:10] ANSI_COLOR="0;31"
[2025-06-04 21:14:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:14:10] HOME_URL="https://www.centos.org/"
[2025-06-04 21:14:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:14:10] 
[2025-06-04 21:14:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:14:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:14:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:14:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:14:10] 
[2025-06-04 21:14:10] 2025-06-04 19:13:26,177 | INFO     | **************************************
[2025-06-04 21:14:10] 2025-06-04 19:13:26,680 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-06-04 21:14:10] 2025-06-04 19:13:26,797 | INFO     | sufficient remaining disk space (1657350914048 B)
[2025-06-04 21:14:10] 2025-06-04 19:13:26,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:14:10] 2025-06-04 19:13:26,798 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:14:10] 2025-06-04 19:13:26,798 | INFO     | update_server=False
[2025-06-04 21:14:10] 2025-06-04 19:13:26,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:14:10] 2025-06-04 19:13:26,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:14:10] 2025-06-04 19:13:26,798 | INFO     | aborting loop
[2025-06-04 21:14:10] 2025-06-04 19:13:27,067 | INFO     | all data control threads have been joined
[2025-06-04 21:14:10] 2025-06-04 19:13:27,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:14:10] 2025-06-04 19:13:27,597 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:14:10] 2025-06-04 19:13:27,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:14:10] 2025-06-04 19:13:27,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:14:10] 2025-06-04 19:13:27,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:14:10] 2025-06-04 19:13:27,733 | INFO     | all payload control threads have been joined
[2025-06-04 21:14:10] 2025-06-04 19:13:27,804 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:27,804 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:27,934 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,005 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,029 | INFO     | all job control threads have been joined
[2025-06-04 21:14:10] 2025-06-04 19:13:28,073 | INFO     | [data] control thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,115 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,272 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,343 | INFO     | [job] validate thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,726 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,739 | INFO     | [payload] control thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:28,862 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:29,035 | INFO     | [job] control thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:29,170 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:29,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:14:10] 2025-06-04 19:13:29,546 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:33,180 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:37,560 | INFO     | job.realtimelogging is not enabled
[2025-06-04 21:14:10] 2025-06-04 19:13:38,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:14:10] 2025-06-04 19:13:38,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278998087488)>', '<ExcThread(monitor, started 140278497261312)>']
[2025-06-04 21:14:10] 2025-06-04 19:13:39,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:14:10] 2025-06-04 19:13:39,667 | INFO     | [monitor] control thread has ended
[2025-06-04 21:14:10] 2025-06-04 19:13:43,758 | INFO     | all workflow threads have been joined
[2025-06-04 21:14:10] 2025-06-04 19:13:43,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:14:10] 2025-06-04 19:13:43,765 | INFO     | traces error code: 0
[2025-06-04 21:14:10] 2025-06-04 19:13:43,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:14:10] 2025-06-04 19:13:44,707 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:14:10] 2025-06-04 19:13:45,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:14:10] 2025-06-04 19:13:45,490 [wrapper] pilotpid: 949764
[2025-06-04 21:14:10] 2025-06-04 19:13:45,539 [wrapper] Pilot exit status: 0
[2025-06-04 21:14:10] 2025-06-04 19:13:45,712 [wrapper] pandaids: 6678363257
[2025-06-04 21:14:10] 2025-06-04 19:13:46,313 [wrapper] cleanup supervisor_pilot 1923638 949765
[2025-06-04 21:14:10] 2025-06-04 19:13:46,356 [wrapper] Test setup, not cleaning
[2025-06-04 21:14:10] 2025-06-04 19:13:46,399 [wrapper] apfmon messages muted
[2025-06-04 21:14:10] 2025-06-04 19:13:46,440 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:14:10] 2025-06-04 19:13:46,484 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:14:10]  *** Error codes and diagnostics ***
[2025-06-04 21:14:10]     "exeErrorCode": 0,
[2025-06-04 21:14:10]     "exeErrorDiag": "",
[2025-06-04 21:14:10]     "pilotErrorCode": 0,
[2025-06-04 21:14:10]     "pilotErrorDiag": "",
[2025-06-04 21:14:10]  *** Listing of results directory ***
[2025-06-04 21:14:10] total 392264
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc      5111 Jun  4 07:19 queuedata.json
[2025-06-04 21:14:10] -rwx------ 1 boinc boinc     37140 Jun  4 07:22 runpilot2-wrapper.sh
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc       100 Jun  4 19:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:14:10] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 19:24 run_atlas
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc       105 Jun  4 19:24 job.xml
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc      6664 Jun  4 19:24 init_data.xml
[2025-06-04 21:14:10] -rw-r--r-- 2 boinc boinc 215345923 Jun  4 19:24 EVNT.45006593._002133.pool.root.1
[2025-06-04 21:14:10] -rw-r--r-- 2 boinc boinc     15093 Jun  4 19:24 start_atlas.sh
[2025-06-04 21:14:10] drwxrwx--x 2 boinc boinc      4096 Jun  4 19:24 shared
[2025-06-04 21:14:10] -rw-r--r-- 2 boinc boinc    508891 Jun  4 19:24 input.tar.gz
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc         0 Jun  4 19:24 boinc_lockfile
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc      2525 Jun  4 19:26 pandaJob.out
[2025-06-04 21:14:10] -rw------- 1 boinc boinc    990984 Jun  4 19:28 agis_schedconf.cvmfs.json
[2025-06-04 21:14:10] -rw------- 1 boinc boinc   1598969 Jun  4 19:28 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:14:10] drwx------ 4 boinc boinc      4096 Jun  4 19:28 pilot3
[2025-06-04 21:14:10] -rw------- 1 boinc boinc 180629185 Jun  4 21:11 HITS.45006595._053297.pool.root.1
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc       529 Jun  4 21:11 boinc_task_state.xml
[2025-06-04 21:14:10] -rw------- 1 boinc boinc      1020 Jun  4 21:12 memory_monitor_summary.json
[2025-06-04 21:14:10] -rw------- 1 boinc boinc    377360 Jun  4 21:12 log.45006595._053297.job.log.tgz.1
[2025-06-04 21:14:10] -rw------- 1 boinc boinc        95 Jun  4 21:13 pilot_heartbeat.json
[2025-06-04 21:14:10] -rw------- 1 boinc boinc      7692 Jun  4 21:13 heartbeat.json
[2025-06-04 21:14:10] -rw------- 1 boinc boinc      4428 Jun  4 21:13 pilotlog.txt
[2025-06-04 21:14:10] -rw------- 1 boinc boinc    554868 Jun  4 21:13 log.45006595._053297.job.log.1
[2025-06-04 21:14:10] -rw------- 1 boinc boinc       357 Jun  4 21:13 output.list
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc       620 Jun  4 21:13 runtime_log
[2025-06-04 21:14:10] -rw------- 1 boinc boinc    952320 Jun  4 21:13 result.tar.gz
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc      8720 Jun  4 21:13 runtime_log.err
[2025-06-04 21:14:10] -rw------- 1 boinc boinc       663 Jun  4 21:13 3RCNDmzkvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYNnKDmoPzxjm.diag
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc        26 Jun  4 21:14 wrapper_checkpoint.txt
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc      8192 Jun  4 21:14 boinc_mmap_file
[2025-06-04 21:14:10] -rw-r--r-- 1 boinc boinc     20906 Jun  4 21:14 stderr.txt
[2025-06-04 21:14:10] HITS file was successfully produced:
[2025-06-04 21:14:11] -rw------- 1 boinc boinc 180629185 Jun  4 21:11 shared/HITS.pool.root.1
[2025-06-04 21:14:11]  *** Contents of shared directory: ***
[2025-06-04 21:14:11] total 388152
[2025-06-04 21:14:11] -rw-r--r-- 2 boinc boinc 215345923 Jun  4 19:24 ATLAS.root_0
[2025-06-04 21:14:11] -rw-r--r-- 2 boinc boinc     15093 Jun  4 19:24 start_atlas.sh
[2025-06-04 21:14:11] -rw-r--r-- 2 boinc boinc    508891 Jun  4 19:24 input.tar.gz
[2025-06-04 21:14:11] -rw------- 1 boinc boinc 180629185 Jun  4 21:11 HITS.pool.root.1
[2025-06-04 21:14:11] -rw------- 1 boinc boinc    952320 Jun  4 21:13 result.tar.gz
21:14:12 (920635): run_atlas exited; CPU time 35483.555672
21:14:12 (920635): called boinc_finish(0)

</stderr_txt>
]]>

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