Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:42:09 (178850): wrapper (7.7.26015): starting
13:42:09 (178850): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 13:42:09] Arguments: --nthreads 4
[2025-06-06 13:42:09] Threads: 4
[2025-06-06 13:42:09] Checking for CVMFS
[2025-06-06 13:42:09] No cvmfs_config command found, will try listing directly
[2025-06-06 13:42:09] CVMFS is ok
[2025-06-06 13:42:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 13:42:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 13:42:09] Further information can be found at the LHC@home message board.
[2025-06-06 13:42:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 13:42:09] Checking for apptainer binary...
[2025-06-06 13:42:09] which: no apptainer in ((null))
[2025-06-06 13:42:09] apptainer is not installed, using version from CVMFS
[2025-06-06 13:42:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 13:42:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-06 13:42:09] apptainer works
[2025-06-06 13:42:09] Set ATHENA_PROC_NUMBER=4
[2025-06-06 13:42:09] Set ATHENA_CORE_NUMBER=4
[2025-06-06 13:42:09] Starting ATLAS job with PandaID=6678363421
[2025-06-06 13:42:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:08:09]  *** The last 200 lines of the pilot log: ***
[2025-06-06 15:08:09]  mtime=0
[2025-06-06 15:08:09]  protocol_id=None
[2025-06-06 15:08:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 15:08:09]  replicas=None
[2025-06-06 15:08:09]  scope=mc23_13p6TeV
[2025-06-06 15:08:09]  status=None
[2025-06-06 15:08:09]  status_code=0
[2025-06-06 15:08:09]  storage_token=
[2025-06-06 15:08:09]  surl=/scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678363421/log.45006595._053461.job.log.tgz.1
[2025-06-06 15:08:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/2b/log.45006595._053461.job.log.tgz.1
[2025-06-06 15:08:09]  workdir=None
[2025-06-06 15:08:09] ]
[2025-06-06 15:08:09] 2025-06-06 13:07:28,497 | INFO     | transferring file log.45006595._053461.job.log.tgz.1 from /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678363421/log.45006595._053461.job.log.tgz.1 to /scratch/b
[2025-06-06 15:08:09] 2025-06-06 13:07:28,498 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678363421/log.45006595._053461.job.log.tgz.1 /scratch/boinc/var/slot80/slots/0/lo
[2025-06-06 15:08:09] 2025-06-06 13:07:28,517 | INFO     | adding to output.list: log.45006595._053461.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/2b/log.45006595._053461.job.log.tg
[2025-06-06 15:08:09] 2025-06-06 13:07:28,518 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 15:08:09] 2025-06-06 13:07:28,518 | INFO     | summary of transferred files:
[2025-06-06 15:08:09] 2025-06-06 13:07:28,518 | INFO     |  -- lfn=log.45006595._053461.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 15:08:09] 2025-06-06 13:07:28,518 | INFO     | stage-out finished correctly
[2025-06-06 15:08:09] 2025-06-06 13:07:29,212 | WARNING  | process 190834 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 15:08:09] 2025-06-06 13:07:29,213 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678363421/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:08:09] 2025-06-06 13:07:29,569 | INFO     | number of running child processes to parent process 190834: 1
[2025-06-06 15:08:09] 2025-06-06 13:07:29,569 | INFO     | maximum number of monitored processes: 6
[2025-06-06 15:08:09] 2025-06-06 13:07:31,906 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 15:08:09] 2025-06-06 13:07:32,013 | INFO     | job 6678363421 has state=finished
[2025-06-06 15:08:09] 2025-06-06 13:07:32,013 | INFO     | preparing for final server update for job 6678363421 in state='finished'
[2025-06-06 15:08:09] 2025-06-06 13:07:32,014 | INFO     | this job has now completed (state=finished)
[2025-06-06 15:08:09] 2025-06-06 13:07:32,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 15:08:09] 2025-06-06 13:07:32,014 | INFO     | log transfer has been attempted: DONE
[2025-06-06 15:08:09] 2025-06-06 13:07:32,015 | INFO     | job 6678363421 has finished - writing final server update
[2025-06-06 15:08:09] 2025-06-06 13:07:32,015 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4067612/.job.ad'
[2025-06-06 15:08:09] 2025-06-06 13:07:32,015 | INFO     | total number of processed events: 400 (read)
[2025-06-06 15:08:09] 2025-06-06 13:07:32,026 | INFO     | executing command: lscpu
[2025-06-06 15:08:09] 2025-06-06 13:07:32,073 | INFO     | monitor loop #369: job 0:6678363421 is in state 'finished'
[2025-06-06 15:08:09] 2025-06-06 13:07:32,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 15:08:09] 2025-06-06 13:07:32,115 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 15:08:09] 2025-06-06 13:07:32,511 | INFO     | PID=182764 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 15:08:09] 2025-06-06 13:07:32,511 | INFO     | .. there are 4 such processes running
[2025-06-06 15:08:09] 2025-06-06 13:07:34,577 | INFO     | monitor loop #370: job 0:6678363421 is in state 'finished'
[2025-06-06 15:08:09] 2025-06-06 13:07:34,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 15:08:09] 2025-06-06 13:07:36,085 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 15:08:09] 2025-06-06 13:07:36,086 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6678363421/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:08:09] 2025-06-06 13:07:36,086 | INFO     | extracted standard info from prmon json
[2025-06-06 15:08:09] 2025-06-06 13:07:36,087 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 15:08:09] 2025-06-06 13:07:36,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 15:08:09] 2025-06-06 13:07:36,087 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 15:08:09] 2025-06-06 13:07:36,087 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 15:08:09] 2025-06-06 13:07:36,089 | INFO     | fitting pss+swap vs Time
[2025-06-06 15:08:09] 2025-06-06 13:07:36,089 | INFO     | sum of square deviations: 141539398.0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | sum of deviations: -4558921498.0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | mean x: 1749212789.0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | mean y: 2368294.8701298703
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | -- intersect: 56343739680.020706
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | intersect: 56343739680.020706
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | chi2: 0.1154227106647671
[2025-06-06 15:08:09] 2025-06-06 13:07:36,090 | INFO     | -- intersect: 56343739680.020706
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | current memory leak: -32.21 B/s (using 77 data points, chi2=0.12)
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | ..............................
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | . Timing measurements:
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | . get job = 0 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | . initial setup = 1 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | . payload setup = 6 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | . stage-in = 0 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,091 | INFO     | . payload execution = 5082 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,092 | INFO     | . stage-out = 0 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,092 | INFO     | . log creation = 0 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,092 | INFO     | ..............................
[2025-06-06 15:08:09] 2025-06-06 13:07:36,185 | INFO     | 
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | job summary report
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | --------------------------------------------------
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | PanDA job id: 6678363421
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | task id: 45006595
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | errors: (none)
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | pilot state: finished 
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | transexitcode: 0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | exeerrorcode: 0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | exeerrordiag: 
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | exitcode: 0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | exitmsg: OK
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | cpuconsumptiontime: 19298 s
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | nevents: 400
[2025-06-06 15:08:09] 2025-06-06 13:07:36,186 | INFO     | neventsw: 0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | pid: 190834
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | pgrp: 190834
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | corecount: 4
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | event service: False
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | sizes: {0: 2397181, 1: 2397380, 4: 2397586, 11: 2397614, 5093: 2423886, 5095: 2432849, 5098: 2433033, 5102: 2433203}
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | --------------------------------------------------
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | 
[2025-06-06 15:08:09] 2025-06-06 13:07:36,187 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2025-06-06 15:08:09] 2025-06-06 13:07:36,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | job 6678363421 has completed (purged errors)
[2025-06-06 15:08:09] 2025-06-06 13:07:36,206 | INFO     | overall cleanup function is called
[2025-06-06 15:08:09] 2025-06-06 13:07:37,214 | INFO     | --- collectZombieJob: --- 10, [190834]
[2025-06-06 15:08:09] 2025-06-06 13:07:37,214 | INFO     | zombie collector waiting for pid 190834
[2025-06-06 15:08:09] 2025-06-06 13:07:37,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 15:08:09] 2025-06-06 13:07:37,215 | INFO     | collected zombie processes
[2025-06-06 15:08:09] 2025-06-06 13:07:37,215 | INFO     | will attempt to kill all subprocesses of pid=190834
[2025-06-06 15:08:09] 2025-06-06 13:07:37,579 | INFO     | process IDs to be killed: [190834] (in reverse order)
[2025-06-06 15:08:09] 2025-06-06 13:07:37,708 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 15:08:09] 2025-06-06 13:07:37,708 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 15:08:09] 2025-06-06 13:07:37,724 | INFO     | did not find any defunct processes belonging to 190834
[2025-06-06 15:08:09] 2025-06-06 13:07:37,735 | INFO     | did not find any defunct processes belonging to 190834
[2025-06-06 15:08:09] 2025-06-06 13:07:37,735 | INFO     | ready for new job
[2025-06-06 15:08:09] 2025-06-06 13:07:37,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 15:08:09] 2025-06-06 13:07:37,736 | INFO     | **************************************
[2025-06-06 15:08:09] 2025-06-06 13:07:37,736 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 15:08:09] 2025-06-06 13:07:37,736 | INFO     | **************************************
[2025-06-06 15:08:09] 2025-06-06 13:07:37,736 | INFO     | 
[2025-06-06 15:08:09] 2025-06-06 13:07:37,742 | INFO     | architecture information:
[2025-06-06 15:08:09] 2025-06-06 13:07:37,742 | INFO     | executing command: cat /etc/os-release
[2025-06-06 15:08:09] 2025-06-06 13:07:37,755 | INFO     | cat /etc/os-release:
[2025-06-06 15:08:09] NAME="CentOS Linux"
[2025-06-06 15:08:09] VERSION="7 (Core)"
[2025-06-06 15:08:09] ID="centos"
[2025-06-06 15:08:09] ID_LIKE="rhel fedora"
[2025-06-06 15:08:09] VERSION_ID="7"
[2025-06-06 15:08:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 15:08:09] ANSI_COLOR="0;31"
[2025-06-06 15:08:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 15:08:09] HOME_URL="https://www.centos.org/"
[2025-06-06 15:08:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 15:08:09] 
[2025-06-06 15:08:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 15:08:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 15:08:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 15:08:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 15:08:09] 
[2025-06-06 15:08:09] 2025-06-06 13:07:37,756 | INFO     | **************************************
[2025-06-06 15:08:09] 2025-06-06 13:07:38,258 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2025-06-06 15:08:09] 2025-06-06 13:07:38,277 | INFO     | sufficient remaining disk space (3316223311872 B)
[2025-06-06 15:08:09] 2025-06-06 13:07:38,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 15:08:09] 2025-06-06 13:07:38,278 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 15:08:09] 2025-06-06 13:07:38,278 | INFO     | update_server=False
[2025-06-06 15:08:09] 2025-06-06 13:07:38,278 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 15:08:09] 2025-06-06 13:07:38,278 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:08:09] 2025-06-06 13:07:38,279 | INFO     | aborting loop
[2025-06-06 15:08:09] 2025-06-06 13:07:38,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 15:08:09] 2025-06-06 13:07:38,494 | INFO     | all data control threads have been joined
[2025-06-06 15:08:09] 2025-06-06 13:07:38,527 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 15:08:09] 2025-06-06 13:07:38,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 15:08:09] 2025-06-06 13:07:38,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 15:08:09] 2025-06-06 13:07:38,802 | INFO     | all payload control threads have been joined
[2025-06-06 15:08:09] 2025-06-06 13:07:39,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 15:08:09] 2025-06-06 13:07:39,158 | INFO     | all job control threads have been joined
[2025-06-06 15:08:09] 2025-06-06 13:07:39,283 | INFO     | [job] retrieve thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,284 | INFO     | [job] job monitor thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,371 | INFO     | [data] copytool_in thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,474 | INFO     | [job] validate thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,499 | INFO     | [data] control thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,714 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,781 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,808 | INFO     | [payload] control thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,885 | INFO     | [payload] failed_post thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:39,986 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:40,163 | INFO     | [job] control thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:40,858 | INFO     | [payload] validate_post thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:41,095 | INFO     | [data] copytool_out thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:41,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:08:09] 2025-06-06 13:07:42,201 | INFO     | [job] queue monitor thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:42,285 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:49,189 | INFO     | job.realtimelogging is not enabled
[2025-06-06 15:08:09] 2025-06-06 13:07:50,194 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 15:08:09] 2025-06-06 13:07:52,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23003968948032)>', '<ExcThread(monitor, started 23003733661440)>']
[2025-06-06 15:08:09] 2025-06-06 13:07:52,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 15:08:09] 2025-06-06 13:07:52,598 | INFO     | [monitor] control thread has ended
[2025-06-06 15:08:09] 2025-06-06 13:07:57,212 | INFO     | all workflow threads have been joined
[2025-06-06 15:08:09] 2025-06-06 13:07:57,213 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 15:08:09] 2025-06-06 13:07:57,213 | INFO     | traces error code: 0
[2025-06-06 15:08:09] 2025-06-06 13:07:57,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 15:08:09] 2025-06-06 13:07:57,397 [wrapper] ==== pilot stdout END ====
[2025-06-06 15:08:09] 2025-06-06 13:07:57,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 15:08:09] 2025-06-06 13:07:57,402 [wrapper] pilotpid: 182764
[2025-06-06 15:08:09] 2025-06-06 13:07:57,405 [wrapper] Pilot exit status: 0
[2025-06-06 15:08:09] 2025-06-06 13:07:57,413 [wrapper] pandaids: 6678363421
[2025-06-06 15:08:09] 2025-06-06 13:07:57,505 [wrapper] cleanup supervisor_pilot  381998 182765
[2025-06-06 15:08:09] 2025-06-06 13:07:57,507 [wrapper] Test setup, not cleaning
[2025-06-06 15:08:09] 2025-06-06 13:07:57,510 [wrapper] apfmon messages muted
[2025-06-06 15:08:09] 2025-06-06 13:07:57,512 [wrapper] ==== wrapper stdout END ====
[2025-06-06 15:08:09] 2025-06-06 13:07:57,515 [wrapper] ==== wrapper stderr END ====
[2025-06-06 15:08:09]  *** Error codes and diagnostics ***
[2025-06-06 15:08:09]     "exeErrorCode": 0,
[2025-06-06 15:08:09]     "exeErrorDiag": "",
[2025-06-06 15:08:09]     "pilotErrorCode": 0,
[2025-06-06 15:08:09]     "pilotErrorDiag": "",
[2025-06-06 15:08:09]  *** Listing of results directory ***
[2025-06-06 15:08:09] total 385012
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc      5111 Jun  4 07:22 queuedata.json
[2025-06-06 15:08:09] -rwx------ 1 boinc boinc     37140 Jun  4 07:24 runpilot2-wrapper.sh
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc       100 Jun  6 13:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 15:08:09] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 13:42 run_atlas
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc       105 Jun  6 13:42 job.xml
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc      6686 Jun  6 13:42 init_data.xml
[2025-06-06 15:08:09] -rw-r--r-- 2 boinc boinc 217880206 Jun  6 13:42 EVNT.45006593._002140.pool.root.1
[2025-06-06 15:08:09] -rw-r--r-- 2 boinc boinc     15093 Jun  6 13:42 start_atlas.sh
[2025-06-06 15:08:09] drwxrwx--x 2 boinc boinc      4096 Jun  6 13:42 shared
[2025-06-06 15:08:09] -rw-r--r-- 2 boinc boinc    508881 Jun  6 13:42 input.tar.gz
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc         0 Jun  6 13:42 boinc_lockfile
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc      2525 Jun  6 13:42 pandaJob.out
[2025-06-06 15:08:09] -rw------- 1 boinc boinc    985732 Jun  6 13:42 agis_schedconf.cvmfs.json
[2025-06-06 15:08:09] -rw------- 1 boinc boinc   1598969 Jun  6 13:42 agis_ddmendpoints.agis.ALL.json
[2025-06-06 15:08:09] drwx------ 4 boinc boinc      4096 Jun  6 13:42 pilot3
[2025-06-06 15:08:09] -rw------- 1 boinc boinc        95 Jun  6 15:06 pilot_heartbeat.json
[2025-06-06 15:08:09] -rw------- 1 boinc boinc 171085469 Jun  6 15:07 HITS.45006595._053461.pool.root.1
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc       528 Jun  6 15:07 boinc_task_state.xml
[2025-06-06 15:08:09] -rw------- 1 boinc boinc      1030 Jun  6 15:07 memory_monitor_summary.json
[2025-06-06 15:08:09] -rw------- 1 boinc boinc    234530 Jun  6 15:07 log.45006595._053461.job.log.tgz.1
[2025-06-06 15:08:09] -rw------- 1 boinc boinc      7701 Jun  6 15:07 heartbeat.json
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc      8192 Jun  6 15:07 boinc_mmap_file
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc        26 Jun  6 15:07 wrapper_checkpoint.txt
[2025-06-06 15:08:09] -rw------- 1 boinc boinc      4436 Jun  6 15:07 pilotlog.txt
[2025-06-06 15:08:09] -rw------- 1 boinc boinc    494072 Jun  6 15:07 log.45006595._053461.job.log.1
[2025-06-06 15:08:09] -rw------- 1 boinc boinc       357 Jun  6 15:07 output.list
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc       620 Jun  6 15:07 runtime_log
[2025-06-06 15:08:09] -rw------- 1 boinc boinc    747520 Jun  6 15:07 result.tar.gz
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc      9025 Jun  6 15:07 runtime_log.err
[2025-06-06 15:08:09] -rw------- 1 boinc boinc       661 Jun  6 15:07 2g1MDmmmvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmdmaKDmXtUoCo.diag
[2025-06-06 15:08:09] -rw-r--r-- 1 boinc boinc     21567 Jun  6 15:08 stderr.txt
[2025-06-06 15:08:09] HITS file was successfully produced:
[2025-06-06 15:08:09] -rw------- 1 boinc boinc 171085469 Jun  6 15:07 shared/HITS.pool.root.1
[2025-06-06 15:08:09]  *** Contents of shared directory: ***
[2025-06-06 15:08:09] total 381104
[2025-06-06 15:08:09] -rw-r--r-- 2 boinc boinc 217880206 Jun  6 13:42 ATLAS.root_0
[2025-06-06 15:08:09] -rw-r--r-- 2 boinc boinc     15093 Jun  6 13:42 start_atlas.sh
[2025-06-06 15:08:09] -rw-r--r-- 2 boinc boinc    508881 Jun  6 13:42 input.tar.gz
[2025-06-06 15:08:09] -rw------- 1 boinc boinc 171085469 Jun  6 15:07 HITS.pool.root.1
[2025-06-06 15:08:09] -rw------- 1 boinc boinc    747520 Jun  6 15:07 result.tar.gz
15:08:11 (178850): run_atlas exited; CPU time 19509.152566
15:08:11 (178850): called boinc_finish(0)

</stderr_txt>
]]>

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