Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:11:36 (1823021): wrapper (7.7.26015): starting
04:11:36 (1823021): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 04:11:36] Arguments: --nthreads 12
[2025-06-06 04:11:36] Threads: 12
[2025-06-06 04:11:36] Checking for CVMFS
[2025-06-06 04:11:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 04:11:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 04:11:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 04:11:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 04:11:37] 2.12.7.0 3695 1852 52136 146842 1 56 4034456 4096001 2736 130560 0 5034068 99.997 473237 133 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 04:11:37] CVMFS is ok
[2025-06-06 04:11:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 04:11:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 04:11:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 04:11:37] Further information can be found at the LHC@home message board.
[2025-06-06 04:11:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 04:11:37] Checking for apptainer binary...
[2025-06-06 04:11:37] apptainer is not installed, using version from CVMFS
[2025-06-06 04:11:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 04:11:38] dualxeon2
[2025-06-06 04:11:38] apptainer works
[2025-06-06 04:11:38] Set ATHENA_PROC_NUMBER=12
[2025-06-06 04:11:38] Set ATHENA_CORE_NUMBER=12
[2025-06-06 04:11:38] Starting ATLAS job with PandaID=6678313953
[2025-06-06 04:11:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 05:47:11]  *** The last 200 lines of the pilot log: ***
[2025-06-06 05:47:11]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/log.45006595._052838.job.log.tgz.1
[2025-06-06 05:47:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/85/log.45006595._052838.job.log.tgz.1
[2025-06-06 05:47:11]  workdir=None
[2025-06-06 05:47:11] ]
[2025-06-06 05:47:11] 2025-06-06 05:46:42,106 | INFO     | transferring file log.45006595._052838.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/log.45006595._052838.job.log.tgz.1 to /var/lib/boinc
[2025-06-06 05:47:11] 2025-06-06 05:46:42,106 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/log.45006595._052838.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.450065
[2025-06-06 05:47:11] 2025-06-06 05:46:42,128 | INFO     | adding to output.list: log.45006595._052838.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/85/log.45006595._052838.job.log.tg
[2025-06-06 05:47:11] 2025-06-06 05:46:42,129 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 05:47:11] 2025-06-06 05:46:42,129 | INFO     | summary of transferred files:
[2025-06-06 05:47:11] 2025-06-06 05:46:42,129 | INFO     |  -- lfn=log.45006595._052838.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 05:47:11] 2025-06-06 05:46:42,129 | INFO     | stage-out finished correctly
[2025-06-06 05:47:11] 2025-06-06 05:46:42,264 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 05:47:11] 2025-06-06 05:46:42,882 | INFO     | job 6678313953 has state=finished
[2025-06-06 05:47:11] 2025-06-06 05:46:42,882 | INFO     | preparing for final server update for job 6678313953 in state='finished'
[2025-06-06 05:47:11] 2025-06-06 05:46:43,615 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-06 05:47:11] 2025-06-06 05:46:43,615 | INFO     | this job has now completed (state=finished)
[2025-06-06 05:47:11] 2025-06-06 05:46:43,615 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 05:47:11] 2025-06-06 05:46:43,615 | INFO     | log transfer has been attempted: DONE
[2025-06-06 05:47:11] 2025-06-06 05:46:43,616 | INFO     | job 6678313953 has finished - writing final server update
[2025-06-06 05:47:11] 2025-06-06 05:46:43,616 | INFO     | total number of processed events: 400 (read)
[2025-06-06 05:47:11] 2025-06-06 05:46:43,621 | INFO     | executing command: lscpu
[2025-06-06 05:47:11] 2025-06-06 05:46:43,669 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 05:47:11] 2025-06-06 05:46:44,684 | WARNING  | process 1833468 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 05:47:11] 2025-06-06 05:46:44,685 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 05:47:11] 2025-06-06 05:46:44,686 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 05:47:11] 2025-06-06 05:46:44,687 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4117510 B
[2025-06-06 05:47:11] 2025-06-06 05:46:44,688 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15562 B
[2025-06-06 05:47:11] 2025-06-06 05:46:44,688 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-06 05:47:11] 2025-06-06 05:46:47,711 | INFO     | PID=1826770 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 05:47:11] 2025-06-06 05:46:47,711 | INFO     | .. there are 4 such processes running
[2025-06-06 05:47:11] 2025-06-06 05:46:49,707 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 05:47:11] 2025-06-06 05:46:49,707 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,715 | INFO     | extracted standard info from prmon json
[2025-06-06 05:47:11] 2025-06-06 05:46:49,716 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 05:47:11] 2025-06-06 05:46:49,716 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 05:47:11] 2025-06-06 05:46:49,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 05:47:11] 2025-06-06 05:46:49,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 05:47:11] 2025-06-06 05:46:49,720 | INFO     | fitting pss+swap vs Time
[2025-06-06 05:47:11] 2025-06-06 05:46:49,720 | INFO     | sum of square deviations: 197203697.5
[2025-06-06 05:47:11] 2025-06-06 05:46:49,724 | INFO     | sum of deviations: -6359654795.999999
[2025-06-06 05:47:11] 2025-06-06 05:46:49,724 | INFO     | mean x: 1749186050.5
[2025-06-06 05:47:11] 2025-06-06 05:46:49,724 | INFO     | mean y: 2728006.534883721
[2025-06-06 05:47:11] 2025-06-06 05:46:49,724 | INFO     | -- intersect: 56412519487.034996
[2025-06-06 05:47:11] 2025-06-06 05:46:49,724 | INFO     | intersect: 56412519487.034996
[2025-06-06 05:47:11] 2025-06-06 05:46:49,725 | INFO     | chi2: 0.06422030858753558
[2025-06-06 05:47:11] 2025-06-06 05:46:49,725 | INFO     | -- intersect: 56412519487.034996
[2025-06-06 05:47:11] 2025-06-06 05:46:49,725 | INFO     | current memory leak: -32.25 B/s (using 86 data points, chi2=0.06)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,725 | INFO     | ..............................
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . Timing measurements:
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . get job = 0 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . initial setup = 2 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . payload setup = 12 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . stage-in = 0 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . payload execution = 5651 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . stage-out = 1 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | . log creation = 0 s
[2025-06-06 05:47:11] 2025-06-06 05:46:49,726 | INFO     | ..............................
[2025-06-06 05:47:11] 2025-06-06 05:46:49,744 | INFO     | sufficient remaining disk space (93247766528 B)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,744 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,785 | INFO     | size of work directory /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953: 4446591 B (within 2537553920 B limit)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,785 | INFO     | pfn file=/var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/HITS.45006595._052838.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,785 | INFO     | total size of present files: 0 B (workdir size: 4446591 B)
[2025-06-06 05:47:11] 2025-06-06 05:46:49,785 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-6678313953/HITS.45006595._052838.pool.root.1 since it does not exist
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | 
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | job summary report
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | --------------------------------------------------
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | PanDA job id: 6678313953
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | task id: 45006595
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | errors: (none)
[2025-06-06 05:47:11] 2025-06-06 05:46:50,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | pilot state: finished 
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | transexitcode: 0
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | exeerrorcode: 0
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | exeerrordiag: 
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | exitcode: 0
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | exitmsg: OK
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | cpuconsumptiontime: 47291 s
[2025-06-06 05:47:11] 2025-06-06 05:46:50,087 | INFO     | nevents: 400
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | neventsw: 0
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | pid: 1833468
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | pgrp: 1833468
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | corecount: 12
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | event service: False
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | sizes: {0: 2397178, 1: 2397377, 7: 2397583, 12: 2397611, 5667: 2423966, 5669: 2433105, 5677: 2433247}
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | --------------------------------------------------
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | 
[2025-06-06 05:47:11] 2025-06-06 05:46:50,088 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-06-06 05:47:11] 2025-06-06 05:46:50,115 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,116 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,116 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,116 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 05:47:11] 2025-06-06 05:46:50,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 05:47:11] 2025-06-06 05:46:50,119 | INFO     | job 6678313953 has completed (purged errors)
[2025-06-06 05:47:11] 2025-06-06 05:46:50,122 | INFO     | overall cleanup function is called
[2025-06-06 05:47:11] 2025-06-06 05:46:50,129 | INFO     | number of running child processes to parent process 1833468: 1
[2025-06-06 05:47:11] 2025-06-06 05:46:50,129 | INFO     | maximum number of monitored processes: 6
[2025-06-06 05:47:11] 2025-06-06 05:46:50,129 | INFO     | aborting job monitoring since job object (job id=6678313953) has expired
[2025-06-06 05:47:11] 2025-06-06 05:46:51,130 | INFO     | --- collectZombieJob: --- 10, [1833468]
[2025-06-06 05:47:11] 2025-06-06 05:46:51,130 | INFO     | zombie collector waiting for pid 1833468
[2025-06-06 05:47:11] 2025-06-06 05:46:51,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 05:47:11] 2025-06-06 05:46:51,130 | INFO     | collected zombie processes
[2025-06-06 05:47:11] 2025-06-06 05:46:51,130 | INFO     | will attempt to kill all subprocesses of pid=1833468
[2025-06-06 05:47:11] 2025-06-06 05:46:51,321 | INFO     | process IDs to be killed: [1833468] (in reverse order)
[2025-06-06 05:47:11] 2025-06-06 05:46:51,401 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 05:47:11] 2025-06-06 05:46:51,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 05:47:11] 2025-06-06 05:46:51,410 | INFO     | did not find any defunct processes belonging to 1833468
[2025-06-06 05:47:11] 2025-06-06 05:46:51,414 | INFO     | did not find any defunct processes belonging to 1833468
[2025-06-06 05:47:11] 2025-06-06 05:46:51,414 | INFO     | ready for new job
[2025-06-06 05:47:11] 2025-06-06 05:46:51,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 05:47:11] 2025-06-06 05:46:51,416 | INFO     | **************************************
[2025-06-06 05:47:11] 2025-06-06 05:46:51,416 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 05:47:11] 2025-06-06 05:46:51,417 | INFO     | **************************************
[2025-06-06 05:47:11] 2025-06-06 05:46:51,417 | INFO     | 
[2025-06-06 05:47:11] 2025-06-06 05:46:51,419 | INFO     | architecture information:
[2025-06-06 05:47:11] 2025-06-06 05:46:51,419 | INFO     | executing command: cat /etc/os-release
[2025-06-06 05:47:11] 2025-06-06 05:46:51,436 | INFO     | cat /etc/os-release:
[2025-06-06 05:47:11] NAME="CentOS Linux"
[2025-06-06 05:47:11] VERSION="7 (Core)"
[2025-06-06 05:47:11] ID="centos"
[2025-06-06 05:47:11] ID_LIKE="rhel fedora"
[2025-06-06 05:47:11] VERSION_ID="7"
[2025-06-06 05:47:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 05:47:11] ANSI_COLOR="0;31"
[2025-06-06 05:47:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 05:47:11] HOME_URL="https://www.centos.org/"
[2025-06-06 05:47:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 05:47:11] 
[2025-06-06 05:47:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 05:47:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 05:47:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 05:47:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 05:47:11] 
[2025-06-06 05:47:11] 2025-06-06 05:46:51,437 | INFO     | **************************************
[2025-06-06 05:47:11] 2025-06-06 05:46:51,939 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-06 05:47:11] 2025-06-06 05:46:51,960 | INFO     | sufficient remaining disk space (93251960832 B)
[2025-06-06 05:47:11] 2025-06-06 05:46:51,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 05:47:11] 2025-06-06 05:46:51,961 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 05:47:11] 2025-06-06 05:46:51,961 | INFO     | update_server=False
[2025-06-06 05:47:11] 2025-06-06 05:46:51,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 05:47:11] 2025-06-06 05:46:51,961 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:47:11] 2025-06-06 05:46:51,961 | INFO     | aborting loop
[2025-06-06 05:47:11] 2025-06-06 05:46:51,965 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 05:47:11] 2025-06-06 05:46:51,965 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 05:47:11] 2025-06-06 05:46:51,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 05:47:11] 2025-06-06 05:46:51,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 05:47:11] 2025-06-06 05:46:52,338 | INFO     | all data control threads have been joined
[2025-06-06 05:47:11] 2025-06-06 05:46:52,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 05:47:11] 2025-06-06 05:46:52,833 | INFO     | all payload control threads have been joined
[2025-06-06 05:47:11] 2025-06-06 05:46:52,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 05:47:11] 2025-06-06 05:46:52,966 | INFO     | [job] retrieve thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:52,966 | INFO     | [job] job monitor thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,014 | INFO     | all job control threads have been joined
[2025-06-06 05:47:11] 2025-06-06 05:46:53,343 | INFO     | [data] control thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,362 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,420 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,528 | INFO     | [data] copytool_in thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,621 | INFO     | [payload] failed_post thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,838 | INFO     | [payload] control thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:53,885 | INFO     | [job] validate thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:54,020 | INFO     | [job] control thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:54,319 | INFO     | [payload] validate_post thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:54,405 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:54,787 | INFO     | [data] copytool_out thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:54,926 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 05:47:11] 2025-06-06 05:46:55,931 | INFO     | [job] queue monitor thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:46:56,920 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:47:02,739 | INFO     | job.realtimelogging is not enabled
[2025-06-06 05:47:11] 2025-06-06 05:47:03,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 05:47:11] 2025-06-06 05:47:05,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125669370103616)>', '<ExcThread(monitor, started 125668813674240)>']
[2025-06-06 05:47:11] 2025-06-06 05:47:06,037 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 05:47:11] 2025-06-06 05:47:06,037 | INFO     | [monitor] control thread has ended
[2025-06-06 05:47:11] 2025-06-06 05:47:10,648 | INFO     | all workflow threads have been joined
[2025-06-06 05:47:11] 2025-06-06 05:47:10,650 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 05:47:11] 2025-06-06 05:47:10,651 | INFO     | traces error code: 0
[2025-06-06 05:47:11] 2025-06-06 05:47:10,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 05:47:11] 2025-06-06 05:47:10,812 [wrapper] ==== pilot stdout END ====
[2025-06-06 05:47:11] 2025-06-06 05:47:10,818 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 05:47:11] 2025-06-06 05:47:10,821 [wrapper] pilotpid: 1826770
[2025-06-06 05:47:11] 2025-06-06 05:47:10,829 [wrapper] Pilot exit status: 0
[2025-06-06 05:47:11] 2025-06-06 05:47:10,841 [wrapper] pandaids: 6678313953
[2025-06-06 05:47:11] 2025-06-06 05:47:10,878 [wrapper] cleanup supervisor_pilot 1918816 1826771
[2025-06-06 05:47:11] 2025-06-06 05:47:10,885 [wrapper] Test setup, not cleaning
[2025-06-06 05:47:11] 2025-06-06 05:47:10,888 [wrapper] apfmon messages muted
[2025-06-06 05:47:11] 2025-06-06 05:47:10,890 [wrapper] ==== wrapper stdout END ====
[2025-06-06 05:47:11] 2025-06-06 05:47:10,893 [wrapper] ==== wrapper stderr END ====
[2025-06-06 05:47:11]  *** Error codes and diagnostics ***
[2025-06-06 05:47:11]     "exeErrorCode": 0,
[2025-06-06 05:47:11]     "exeErrorDiag": "",
[2025-06-06 05:47:11]     "pilotErrorCode": 0,
[2025-06-06 05:47:11]     "pilotErrorDiag": "",
[2025-06-06 05:47:11]  *** Listing of results directory ***
[2025-06-06 05:47:11] total 391652
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-06 05:47:11] -rwx------ 1 boinc boinc     37140 Jun  4 05:01 runpilot2-wrapper.sh
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:01 queuedata.json
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc       100 Jun  6 04:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 05:47:11] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 04:11 run_atlas
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc       105 Jun  6 04:11 job.xml
[2025-06-06 05:47:11] -rw-r--r-- 2 boinc boinc 215731164 Jun  6 04:11 EVNT.45006593._002116.pool.root.1
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc      6557 Jun  6 04:11 init_data.xml
[2025-06-06 05:47:11] drwxrwx--x 2 boinc boinc      4096 Jun  6 04:11 shared
[2025-06-06 05:47:11] -rw-r--r-- 2 boinc boinc    508882 Jun  6 04:11 input.tar.gz
[2025-06-06 05:47:11] -rw-r--r-- 2 boinc boinc     15093 Jun  6 04:11 start_atlas.sh
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc         0 Jun  6 04:11 boinc_lockfile
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc      2525 Jun  6 04:11 pandaJob.out
[2025-06-06 05:47:11] -rw------- 1 boinc boinc    987721 Jun  6 04:11 agis_schedconf.cvmfs.json
[2025-06-06 05:47:11] -rw------- 1 boinc boinc   1598969 Jun  6 04:11 agis_ddmendpoints.agis.ALL.json
[2025-06-06 05:47:11] drwx------ 4 boinc boinc      4096 Jun  6 04:11 pilot3
[2025-06-06 05:47:11] -rw------- 1 boinc boinc 179639326 Jun  6 05:46 HITS.45006595._052838.pool.root.1
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc       530 Jun  6 05:46 boinc_task_state.xml
[2025-06-06 05:47:11] -rw------- 1 boinc boinc      1035 Jun  6 05:46 memory_monitor_summary.json
[2025-06-06 05:47:11] -rw------- 1 boinc boinc        95 Jun  6 05:46 pilot_heartbeat.json
[2025-06-06 05:47:11] -rw------- 1 boinc boinc    370048 Jun  6 05:46 log.45006595._052838.job.log.tgz.1
[2025-06-06 05:47:11] -rw------- 1 boinc boinc      7672 Jun  6 05:46 heartbeat.json
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc      8192 Jun  6 05:47 boinc_mmap_file
[2025-06-06 05:47:11] -rw------- 1 boinc boinc      4555 Jun  6 05:47 pilotlog.txt
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc        27 Jun  6 05:47 wrapper_checkpoint.txt
[2025-06-06 05:47:11] -rw------- 1 boinc boinc    552360 Jun  6 05:47 log.45006595._052838.job.log.1
[2025-06-06 05:47:11] -rw------- 1 boinc boinc       357 Jun  6 05:47 output.list
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc       620 Jun  6 05:47 runtime_log
[2025-06-06 05:47:11] -rw------- 1 boinc boinc    942080 Jun  6 05:47 result.tar.gz
[2025-06-06 05:47:11] -rw------- 1 boinc boinc       647 Jun  6 05:47 alvNDmcQvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmAjaKDmTSZjOn.diag
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc      8726 Jun  6 05:47 runtime_log.err
[2025-06-06 05:47:11] -rw-r--r-- 1 boinc boinc     22700 Jun  6 05:47 stderr.txt
[2025-06-06 05:47:11] HITS file was successfully produced:
[2025-06-06 05:47:11] -rw------- 1 boinc boinc 179639326 Jun  6 05:46 shared/HITS.pool.root.1
[2025-06-06 05:47:11]  *** Contents of shared directory: ***
[2025-06-06 05:47:11] total 387552
[2025-06-06 05:47:11] -rw-r--r-- 2 boinc boinc 215731164 Jun  6 04:11 ATLAS.root_0
[2025-06-06 05:47:11] -rw-r--r-- 2 boinc boinc    508882 Jun  6 04:11 input.tar.gz
[2025-06-06 05:47:11] -rw-r--r-- 2 boinc boinc     15093 Jun  6 04:11 start_atlas.sh
[2025-06-06 05:47:11] -rw------- 1 boinc boinc 179639326 Jun  6 05:46 HITS.pool.root.1
[2025-06-06 05:47:11] -rw------- 1 boinc boinc    942080 Jun  6 05:47 result.tar.gz
05:47:12 (1823021): run_atlas exited; CPU time 47354.759923
05:47:12 (1823021): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN