Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:23:06 (5856): wrapper (7.7.26015): starting
22:23:06 (5856): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:23:06] Arguments: --nthreads 8
[2025-06-04 22:23:06] Threads: 8
[2025-06-04 22:23:06] Checking for CVMFS
[2025-06-04 22:23:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:23:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:23:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:23:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:23:08] 2.11.2.0 24500 33849 92376 146793 3 15 18493728 25165825 3522 130560 0 16639439 99.804 19724036 4129 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:23:08] CVMFS is ok
[2025-06-04 22:23:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:23:08] Checking for apptainer binary...
[2025-06-04 22:23:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:23:08] Running /usr/bin/apptainer --version
[2025-06-04 22:23:08] apptainer version 1.3.2-1.el7
[2025-06-04 22:23:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:38:58] cg-vwn232.simple-grid.lan
[2025-06-04 22:38:58] apptainer works
[2025-06-04 22:38:58] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:38:58] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:38:58] Starting ATLAS job with PandaID=6678363228
[2025-06-04 22:38:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:45:17]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:45:17] 2025-06-05 00:31:09,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:45:17] 2025-06-05 00:31:09,033 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:45:17] 2025-06-05 00:31:09,034 | INFO     | sum of square deviations: 3579276412.5
[2025-06-05 02:45:17] 2025-06-05 00:31:09,036 | INFO     | sum of deviations: -6948810546.999995
[2025-06-05 02:45:17] 2025-06-05 00:31:09,036 | INFO     | mean x: 1749076494.5
[2025-06-05 02:45:17] 2025-06-05 00:31:09,037 | INFO     | mean y: 2497169.743362832
[2025-06-05 02:45:17] 2025-06-05 00:31:09,037 | INFO     | -- intersect: 3398155898.430995
[2025-06-05 02:45:17] 2025-06-05 00:31:09,037 | INFO     | intersect: 3398155898.430995
[2025-06-05 02:45:17] 2025-06-05 00:31:09,037 | INFO     | chi2: 2.538225463625089
[2025-06-05 02:45:17] 2025-06-05 00:31:09,038 | INFO     | sum of square deviations: 3346927870.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,040 | INFO     | sum of deviations: 8202909791.000004
[2025-06-05 02:45:17] 2025-06-05 00:31:09,040 | INFO     | mean x: 1749076342.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,040 | INFO     | mean y: 2506938.511312217
[2025-06-05 02:45:17] 2025-06-05 00:31:09,040 | INFO     | -- intersect: -4284264694.54401
[2025-06-05 02:45:17] 2025-06-05 00:31:09,040 | INFO     | intersect: -4284264694.54401
[2025-06-05 02:45:17] 2025-06-05 00:31:09,041 | INFO     | chi2: 1.7722642611315933
[2025-06-05 02:45:17] 2025-06-05 00:31:09,041 | INFO     | current chi2=1.7722642611315933 (change=30.17703562864551 %)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,041 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,044 | INFO     | sum of deviations: 8142311536.999995
[2025-06-05 02:45:17] 2025-06-05 00:31:09,045 | INFO     | mean x: 1749076189.5
[2025-06-05 02:45:17] 2025-06-05 00:31:09,045 | INFO     | mean y: 2506896.907407407
[2025-06-05 02:45:17] 2025-06-05 00:31:09,045 | INFO     | -- intersect: -4554986770.944564
[2025-06-05 02:45:17] 2025-06-05 00:31:09,045 | INFO     | intersect: -4554986770.944564
[2025-06-05 02:45:17] 2025-06-05 00:31:09,045 | INFO     | chi2: 1.7729993463654343
[2025-06-05 02:45:17] 2025-06-05 00:31:09,045 | INFO     | current chi2=1.7729993463654343 (change=-0.04147717978421984 %)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,046 | INFO     | right removable region: 215
[2025-06-05 02:45:17] 2025-06-05 00:31:09,046 | INFO     | sum of square deviations: 3346927870.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,048 | INFO     | sum of deviations: -45503342413.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,048 | INFO     | mean x: 1749076647.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,048 | INFO     | mean y: 2522263.3710407238
[2025-06-05 02:45:17] 2025-06-05 00:31:09,048 | INFO     | -- intersect: 23782190265.305878
[2025-06-05 02:45:17] 2025-06-05 00:31:09,049 | INFO     | intersect: 23782190265.305878
[2025-06-05 02:45:17] 2025-06-05 00:31:09,049 | INFO     | chi2: 0.9620364117739411
[2025-06-05 02:45:17] 2025-06-05 00:31:09,049 | INFO     | current chi2=0.9620364117739411 (change=62.098071051577804 %)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,050 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,055 | INFO     | sum of deviations: -45210870837.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,055 | INFO     | mean x: 1749076799.5
[2025-06-05 02:45:17] 2025-06-05 00:31:09,055 | INFO     | mean y: 2522026.5555555555
[2025-06-05 02:45:17] 2025-06-05 00:31:09,055 | INFO     | -- intersect: 25308398433.010113
[2025-06-05 02:45:17] 2025-06-05 00:31:09,055 | INFO     | intersect: 25308398433.010113
[2025-06-05 02:45:17] 2025-06-05 00:31:09,056 | INFO     | chi2: 0.9447657673941832
[2025-06-05 02:45:17] 2025-06-05 00:31:09,056 | INFO     | current chi2=0.9447657673941832 (change=1.7952173294472085 %)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,056 | INFO     | left removable region: 20
[2025-06-05 02:45:17] 2025-06-05 00:31:09,056 | INFO     | sum of square deviations: 2299168690.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,058 | INFO     | sum of deviations: -16190569430.999994
[2025-06-05 02:45:17] 2025-06-05 00:31:09,058 | INFO     | mean x: 1749076769.0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,058 | INFO     | mean y: 2523059.123076923
[2025-06-05 02:45:17] 2025-06-05 00:31:09,058 | INFO     | -- intersect: 12319387407.44701
[2025-06-05 02:45:17] 2025-06-05 00:31:09,058 | INFO     | intersect: 12319387407.44701
[2025-06-05 02:45:17] 2025-06-05 00:31:09,059 | INFO     | chi2: 0.11906983121278526
[2025-06-05 02:45:17] 2025-06-05 00:31:09,059 | INFO     | -- intersect: 12319387407.44701
[2025-06-05 02:45:17] 2025-06-05 00:31:09,059 | INFO     | current memory leak: -7.04 B/s (using 195 data points, chi2=0.12)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,060 | INFO     | ..............................
[2025-06-05 02:45:17] 2025-06-05 00:31:09,060 | INFO     | . Timing measurements:
[2025-06-05 02:45:17] 2025-06-05 00:31:09,060 | INFO     | . get job = 0 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,060 | INFO     | . initial setup = 2 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,061 | INFO     | . payload setup = 15 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,061 | INFO     | . stage-in = 0 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,061 | INFO     | . payload execution = 13768 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,061 | INFO     | . stage-out = 3 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,061 | INFO     | . log creation = 1 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,061 | INFO     | ..............................
[2025-06-05 02:45:17] 2025-06-05 00:31:09,208 | INFO     | 
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | job summary report
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | --------------------------------------------------
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | PanDA job id: 6678363228
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | task id: 45006595
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | errors: (none)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | pilot state: finished 
[2025-06-05 02:45:17] 2025-06-05 00:31:09,209 | INFO     | transexitcode: 0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | exeerrorcode: 0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | exeerrordiag: 
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | exitcode: 0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | exitmsg: OK
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | cpuconsumptiontime: 52172 s
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | nevents: 400
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | neventsw: 0
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | pid: 27907
[2025-06-05 02:45:17] 2025-06-05 00:31:09,210 | INFO     | pgrp: 27907
[2025-06-05 02:45:17] 2025-06-05 00:31:09,211 | INFO     | corecount: 8
[2025-06-05 02:45:17] 2025-06-05 00:31:09,211 | INFO     | event service: False
[2025-06-05 02:45:17] 2025-06-05 00:31:09,211 | INFO     | sizes: {0: 2397171, 1: 2397370, 11: 2397576, 12: 2397604, 13787: 2427291, 13792: 2436232, 13793: 2436416, 13880: 2436586}
[2025-06-05 02:45:17] 2025-06-05 00:31:09,211 | INFO     | --------------------------------------------------
[2025-06-05 02:45:17] 2025-06-05 00:31:09,211 | INFO     | 
[2025-06-05 02:45:17] 2025-06-05 00:31:09,211 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 02:45:17] 2025-06-05 00:31:09,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:45:17] 2025-06-05 00:31:09,577 | INFO     | job 6678363228 has completed (purged errors)
[2025-06-05 02:45:17] 2025-06-05 00:31:09,578 | INFO     | overall cleanup function is called
[2025-06-05 02:45:17] 2025-06-05 00:31:10,274 | INFO     | PID=19305 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 02:45:17] 2025-06-05 00:31:10,274 | INFO     | .. there are 9 such processes running
[2025-06-05 02:45:17] 2025-06-05 00:31:10,586 | INFO     | --- collectZombieJob: --- 10, [27907]
[2025-06-05 02:45:17] 2025-06-05 00:31:10,587 | INFO     | zombie collector waiting for pid 27907
[2025-06-05 02:45:17] 2025-06-05 00:31:10,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:45:17] 2025-06-05 00:31:10,587 | INFO     | collected zombie processes
[2025-06-05 02:45:17] 2025-06-05 00:31:10,587 | INFO     | will attempt to kill all subprocesses of pid=27907
[2025-06-05 02:45:17] 2025-06-05 00:31:10,712 | INFO     | process IDs to be killed: [27907] (in reverse order)
[2025-06-05 02:45:17] 2025-06-05 00:31:11,394 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:45:17] 2025-06-05 00:31:11,394 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:45:17] 2025-06-05 00:31:11,398 | INFO     | did not find any defunct processes belonging to 27907
[2025-06-05 02:45:17] 2025-06-05 00:31:11,401 | INFO     | did not find any defunct processes belonging to 27907
[2025-06-05 02:45:17] 2025-06-05 00:31:11,402 | INFO     | ready for new job
[2025-06-05 02:45:17] 2025-06-05 00:31:11,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:45:17] 2025-06-05 00:31:11,404 | INFO     | **************************************
[2025-06-05 02:45:17] 2025-06-05 00:31:11,404 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:45:17] 2025-06-05 00:31:11,404 | INFO     | **************************************
[2025-06-05 02:45:17] 2025-06-05 00:31:11,404 | INFO     | 
[2025-06-05 02:45:17] 2025-06-05 00:31:11,405 | INFO     | pilot is running in a VM
[2025-06-05 02:45:17] 2025-06-05 00:31:11,405 | INFO     | architecture information:
[2025-06-05 02:45:17] 2025-06-05 00:31:11,416 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:45:17] 2025-06-05 00:31:11,668 | INFO     | cat /etc/os-release:
[2025-06-05 02:45:17] NAME="CentOS Linux"
[2025-06-05 02:45:17] VERSION="7 (Core)"
[2025-06-05 02:45:17] ID="centos"
[2025-06-05 02:45:17] ID_LIKE="rhel fedora"
[2025-06-05 02:45:17] VERSION_ID="7"
[2025-06-05 02:45:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:45:17] ANSI_COLOR="0;31"
[2025-06-05 02:45:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:45:17] HOME_URL="https://www.centos.org/"
[2025-06-05 02:45:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:45:17] 
[2025-06-05 02:45:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:45:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:45:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:45:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:45:17] 
[2025-06-05 02:45:17] 2025-06-05 00:31:11,669 | INFO     | **************************************
[2025-06-05 02:45:17] 2025-06-05 00:31:12,172 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 02:45:17] 2025-06-05 00:31:12,350 | INFO     | sufficient remaining disk space (496904437760 B)
[2025-06-05 02:45:17] 2025-06-05 00:31:12,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:45:17] 2025-06-05 00:31:12,351 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:45:17] 2025-06-05 00:31:12,351 | INFO     | update_server=False
[2025-06-05 02:45:17] 2025-06-05 00:31:12,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:45:17] 2025-06-05 00:31:12,351 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 02:45:17] 2025-06-05 00:31:12,352 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:45:17] 2025-06-05 00:31:12,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:45:17] 2025-06-05 00:31:12,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:45:17] 2025-06-05 00:31:12,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:45:17] 2025-06-05 00:31:12,556 | INFO     | all payload control threads have been joined
[2025-06-05 02:45:17] 2025-06-05 00:31:12,592 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 02:45:17] 2025-06-05 00:31:12,593 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 02:45:17] 2025-06-05 00:31:12,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:45:17] 2025-06-05 00:31:12,593 | INFO     | will abort loop
[2025-06-05 02:45:17] 2025-06-05 00:31:12,714 | INFO     | all data control threads have been joined
[2025-06-05 02:45:17] 2025-06-05 00:31:13,357 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,484 | INFO     | [job] validate thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,562 | INFO     | [payload] control thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,569 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,599 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,657 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,720 | INFO     | [data] control thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,764 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:13,966 | INFO     | all job control threads have been joined
[2025-06-05 02:45:17] 2025-06-05 00:31:14,142 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:14,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:45:17] 2025-06-05 00:31:14,365 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:14,471 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:14,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:45:17] 2025-06-05 00:31:14,483 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:14,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:14,972 | INFO     | [job] control thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:15,232 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:18,490 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:45:17] 2025-06-05 00:31:19,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059178342208)>', '<ExcThread(monitor, started 140058598299392)>']
[2025-06-05 02:45:17] 2025-06-05 00:31:20,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:45:17] 2025-06-05 00:31:20,403 | INFO     | [monitor] control thread has ended
[2025-06-05 02:45:17] 2025-06-05 00:31:24,513 | INFO     | all workflow threads have been joined
[2025-06-05 02:45:17] 2025-06-05 00:31:24,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:45:17] 2025-06-05 00:31:24,514 | INFO     | traces error code: 0
[2025-06-05 02:45:17] 2025-06-05 00:31:24,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:45:17] 2025-06-05 00:31:24,868 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:45:17] 2025-06-05 00:31:24,965 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:45:17] 2025-06-05 00:31:25,044 [wrapper] pilotpid: 19305
[2025-06-05 02:45:17] 2025-06-05 00:31:25,166 [wrapper] Pilot exit status: 0
[2025-06-05 02:45:17] 2025-06-05 00:31:25,694 [wrapper] pandaids: 6678363228
[2025-06-05 02:45:17] 2025-06-05 00:31:26,628 [wrapper] cleanup supervisor_pilot 25561 19306
[2025-06-05 02:45:17] 2025-06-05 00:31:26,698 [wrapper] Test setup, not cleaning
[2025-06-05 02:45:17] 2025-06-05 00:31:26,794 [wrapper] apfmon messages muted
[2025-06-05 02:45:17] 2025-06-05 00:31:26,895 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:45:17] 2025-06-05 00:31:27,006 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:45:17]  *** Error codes and diagnostics ***
[2025-06-05 02:45:17]     "exeErrorCode": 0,
[2025-06-05 02:45:17]     "exeErrorDiag": "",
[2025-06-05 02:45:17]     "pilotErrorCode": 0,
[2025-06-05 02:45:17]     "pilotErrorDiag": "",
[2025-06-05 02:45:17]  *** Listing of results directory ***
[2025-06-05 02:45:17] total 391052
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:19 queuedata.json
[2025-06-05 02:45:17] -rwx------. 1 boinc boinc     37140 Jun  4 07:20 runpilot2-wrapper.sh
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:45:17] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:23 run_atlas
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:23 job.xml
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc      6392 Jun  4 22:23 init_data.xml
[2025-06-05 02:45:17] -rw-r--r--. 2 boinc boinc 212001636 Jun  4 22:23 EVNT.45006593._002132.pool.root.1
[2025-06-05 02:45:17] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:23 start_atlas.sh
[2025-06-05 02:45:17] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:23 shared
[2025-06-05 02:45:17] -rw-r--r--. 2 boinc boinc    508883 Jun  4 22:23 input.tar.gz
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:23 boinc_lockfile
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc      2525 Jun  4 22:38 pandaJob.out
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc    987032 Jun  4 22:39 agis_schedconf.cvmfs.json
[2025-06-05 02:45:17] drwx------. 4 boinc boinc      4096 Jun  4 22:39 pilot3
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc 181457901 Jun  5 02:28 HITS.45006595._053268.pool.root.1
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc       530 Jun  5 02:28 boinc_task_state.xml
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc      1016 Jun  5 02:29 memory_monitor_summary.json
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc   1598969 Jun  5 02:29 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc    380415 Jun  5 02:29 log.45006595._053268.job.log.tgz.1
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc        95 Jun  5 02:31 pilot_heartbeat.json
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc      7688 Jun  5 02:31 heartbeat.json
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc      4725 Jun  5 02:31 pilotlog.txt
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc   1197783 Jun  5 02:31 log.45006595._053268.job.log.1
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc       357 Jun  5 02:31 output.list
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc       620 Jun  5 02:31 runtime_log
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc   1597440 Jun  5 02:31 result.tar.gz
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc       657 Jun  5 02:31 TVmLDmsivg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtlaKDmz9jqBn.diag
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc      8659 Jun  5 02:31 runtime_log.err
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc      8192 Jun  5 02:45 boinc_mmap_file
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc        28 Jun  5 02:45 wrapper_checkpoint.txt
[2025-06-05 02:45:17] -rw-r--r--. 1 boinc boinc     20611 Jun  5 02:45 stderr.txt
[2025-06-05 02:45:17] HITS file was successfully produced:
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc 181457901 Jun  5 02:28 shared/HITS.pool.root.1
[2025-06-05 02:45:17]  *** Contents of shared directory: ***
[2025-06-05 02:45:17] total 386320
[2025-06-05 02:45:17] -rw-r--r--. 2 boinc boinc 212001636 Jun  4 22:23 ATLAS.root_0
[2025-06-05 02:45:17] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:23 start_atlas.sh
[2025-06-05 02:45:17] -rw-r--r--. 2 boinc boinc    508883 Jun  4 22:23 input.tar.gz
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc 181457901 Jun  5 02:28 HITS.pool.root.1
[2025-06-05 02:45:17] -rw-------. 1 boinc boinc   1597440 Jun  5 02:31 result.tar.gz
02:45:19 (5856): run_atlas exited; CPU time 52356.050183
02:45:19 (5856): called boinc_finish(0)

</stderr_txt>
]]>

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