Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-06 17:25:00 (39676): Detected: vboxwrapper 26206
2025-06-06 17:25:00 (39676): Detected: BOINC client v8.0.2
2025-06-06 17:25:00 (39676): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-06 17:25:01 (39676): Successfully copied 'init_data.xml' to the shared directory.
2025-06-06 17:25:01 (39676): Create VM. (boinc_9a0424fbe967b663, slot#3)
2025-06-06 17:25:02 (39676): Setting Memory Size for VM. (4800MB)
2025-06-06 17:25:02 (39676): Setting CPU Count for VM. (8)
2025-06-06 17:25:03 (39676): Setting Chipset Options for VM.
2025-06-06 17:25:03 (39676): Setting Graphics Controller Options for VM.
2025-06-06 17:25:03 (39676): Setting Boot Options for VM.
2025-06-06 17:25:03 (39676): Setting Network Configuration for NAT.
2025-06-06 17:25:04 (39676): Enabling VM Network Access.
2025-06-06 17:25:04 (39676): Disabling USB Support for VM.
2025-06-06 17:25:04 (39676): Disabling COM Port Support for VM.
2025-06-06 17:25:04 (39676): Disabling LPT Port Support for VM.
2025-06-06 17:25:05 (39676): Disabling Audio Support for VM.
2025-06-06 17:25:05 (39676): Disabling Clipboard Support for VM.
2025-06-06 17:25:05 (39676): Disabling Drag and Drop Support for VM.
2025-06-06 17:25:05 (39676): Adding storage controller(s) to VM.
2025-06-06 17:25:06 (39676): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-06 17:25:06 (39676): Adding VirtualBox Guest Additions to VM.
2025-06-06 17:25:06 (39676): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-06 17:25:07 (39676): forwarding host port 48290 to guest port 80
2025-06-06 17:25:07 (39676): Enabling remote desktop for VM.
2025-06-06 17:25:07 (39676): Required extension pack not installed, remote desktop not enabled.
2025-06-06 17:25:07 (39676): Enabling shared directory for VM.
2025-06-06 17:25:08 (39676): Starting VM using VBoxManage interface. (boinc_9a0424fbe967b663, slot#3)
2025-06-06 17:25:17 (39676): Successfully started VM. (PID = '42940')
2025-06-06 17:25:17 (39676): Reporting VM Process ID to BOINC.
2025-06-06 17:25:17 (39676): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-06 17:25:17 (39676): Guest Log: CPUID EDX: 0x178bfbff
2025-06-06 17:25:17 (39676): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-06 17:25:17 (39676): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-06 17:25:17 (39676): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-06 17:25:17 (39676): Detected: Web Application Enabled (http://localhost:48290)
2025-06-06 17:25:17 (39676): Preference change detected
2025-06-06 17:25:17 (39676): Setting CPU throttle for VM. (25%)
2025-06-06 17:25:18 (39676): Setting checkpoint interval to 10000 seconds. (Higher value of (Preference: 10000 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-06 17:25:19 (39676): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-06 17:25:19 (39676): Guest Log: BIOS: Booting from Hard Disk...
2025-06-06 17:25:27 (39676): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-06 17:25:27 (39676): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-06 17:25:27 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-06 17:25:28 (39676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-06 17:25:43 (39676): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-06 17:25:43 (39676): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-06 17:26:07 (39676): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000295 main     Log opened 2025-06-06T17:26:05.369776000Z
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000622 main     OS Product: Linux
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000755 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000854 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000949 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000952 main     Process ID: 1389
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.000953 main     Package type: LINUX_64BITS_GENERIC
2025-06-06 17:26:07 (39676): Guest Log: 00:00:00.003183 main     5.2.32 r132073 started. Verbose level = 0
2025-06-06 17:26:07 (39676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-06 17:26:07 (39676): Guest Log: [INFO] Mounting shared directory
2025-06-06 17:26:07 (39676): Guest Log: [INFO] Checking for init_data.xml
2025-06-06 17:26:15 (39676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-06 17:26:15 (39676): Guest Log: [INFO] Detected branch: prod
2025-06-06 17:26:15 (39676): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-06 17:26:15 (39676): Guest Log: Copying input files
2025-06-06 17:26:17 (39676): Guest Log: 00:00:10.007653 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 612 014 986 000ns (GuestNow=1 749 252 377 390 502 000 ns GuestLast=1 749 230 765 375 516 000 ns fSetTimeLastLoop=true )
2025-06-06 17:26:21 (39676): Guest Log: Copied input files into RunAtlas.
2025-06-06 17:26:21 (39676): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-06 17:26:21 (39676): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-06 17:26:21 (39676): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-06 17:26:21 (39676): Guest Log: Further information can be found at the LHC@home message board.
2025-06-06 17:26:33 (39676): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-06 17:26:34 (39676): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-06 17:26:34 (39676): Guest Log: 2.6.3.0 1673 0 30068 146879 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-06 17:26:36 (39676): Guest Log: copied the webapp to /var/www
2025-06-06 17:26:36 (39676): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-06 17:26:36 (39676): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-06 17:26:37 (39676): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-06 17:26:37 (39676): Guest Log:  *** Starting ATLAS job. (PandaID=6678314078 taskID=45006595) ***
2025-06-06 17:29:23 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 17:29:43 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 19:05:41 (39676): Status Report: Elapsed Time: '6000.000000'
2025-06-06 19:05:41 (39676): Status Report: CPU Time: '8721.062500'
2025-06-06 19:28:54 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 19:29:14 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 20:46:04 (39676): Status Report: Elapsed Time: '12000.000000'
2025-06-06 20:46:04 (39676): Status Report: CPU Time: '22821.328125'
2025-06-06 21:47:00 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 21:47:20 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 22:26:30 (39676): Status Report: Elapsed Time: '18000.000000'
2025-06-06 22:26:30 (39676): Status Report: CPU Time: '36796.609375'
2025-06-06 22:33:38 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 22:33:59 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 22:58:54 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 22:59:14 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 00:07:17 (39676): Status Report: Elapsed Time: '24000.000000'
2025-06-07 00:07:17 (39676): Status Report: CPU Time: '50709.921875'
2025-06-07 01:23:51 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 01:24:12 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 01:33:54 (39676): VM state change detected. (old = 'running', new = 'paused')
2025-06-07 01:34:14 (39676): VM state change detected. (old = 'paused', new = 'running')
2025-06-07 01:48:05 (39676): Status Report: Elapsed Time: '30000.000000'
2025-06-07 01:48:05 (39676): Status Report: CPU Time: '63683.218750'
2025-06-07 02:10:58 (39676): Guest Log:  *** Job finished ***
2025-06-07 02:10:58 (39676): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:37,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:37,762 | INFO     | [job] queue monitor thread has finished
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:41,433 | INFO     | [data] queue_monitor thread has finished
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:43,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139754402604864)>', '<ExcThread(monitor, started 139753504618240)>']
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:43,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:43,766 | INFO     | [monitor] control thread has ended
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,484 | INFO     | all workflow threads have been joined
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,484 | INFO     | end of generic workflow (traces error code: 0)
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,485 | INFO     | traces error code: 0
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,849 [wrapper] ==== pilot stdout END ====
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,859 [wrapper] ==== wrapper stdout RESUME ====
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,868 [wrapper] pilotpid: 6024
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:48,879 [wrapper] Pilot exit status: 0
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:50,863 [wrapper] pandaids: 6678314078
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:50,935 [wrapper] cleanup supervisor_pilot 29787 6025
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:50,945 [wrapper] Test setup, not cleaning
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:50,954 [wrapper] apfmon messages muted
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:50,964 [wrapper] ==== wrapper stdout END ====
2025-06-07 02:10:58 (39676): Guest Log: 2025-06-07 08:08:50,972 [wrapper] ==== wrapper stderr END ====
2025-06-07 02:10:58 (39676): Guest Log:  *** Error codes and diagnostics ***
2025-06-07 02:10:58 (39676): Guest Log:     "exeErrorCode": 0,
2025-06-07 02:10:58 (39676): Guest Log:     "exeErrorDiag": "",
2025-06-07 02:10:58 (39676): Guest Log:     "pilotErrorCode": 0,
2025-06-07 02:10:58 (39676): Guest Log:     "pilotErrorDiag": "",
2025-06-07 02:10:58 (39676): Guest Log:  *** Listing of results directory ***
2025-06-07 02:10:58 (39676): Guest Log: total 178728
2025-06-07 02:10:58 (39676): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 04:58 pilot3.tar.gz
2025-06-07 02:10:58 (39676): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 05:09 queuedata.json
2025-06-07 02:10:58 (39676): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 05:10 runpilot2-wrapper.sh
2025-06-07 02:10:58 (39676): Guest Log: -rwxr-xr-x. 1 atlas atlas      9043 Jun  6 23:26 init_data.xml
2025-06-07 02:10:58 (39676): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 Jun  6 23:26 input.tar.gz
2025-06-07 02:10:58 (39676): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 23:26 start_atlas.sh
2025-06-07 02:10:58 (39676): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 23:26 EVNT.45006593._002121.pool.root.1 -> /data/./ATLAS.root_0
2025-06-07 02:10:58 (39676): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  6 23:26 pandaJob.out
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas    985748 Jun  6 23:28 agis_schedconf.cvmfs.json
2025-06-07 02:10:58 (39676): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 23:28 pilot3
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas 174702287 Jun  7 08:05 HITS.45006595._052963.pool.root.1
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas      1029 Jun  7 08:07 memory_monitor_summary.json
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  7 08:07 agis_ddmendpoints.agis.ALL.json
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas    474235 Jun  7 08:08 log.45006595._052963.job.log.tgz.1
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas        95 Jun  7 08:08 pilot_heartbeat.json
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas      7735 Jun  7 08:08 heartbeat.json
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas      4729 Jun  7 08:08 pilotlog.txt
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas   1803850 Jun  7 08:08 log.45006595._052963.job.log.1
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas       357 Jun  7 08:08 output.list
2025-06-07 02:10:58 (39676): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  7 08:08 runtime_log
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas   2293760 Jun  7 08:08 result.tar.gz
2025-06-07 02:10:58 (39676): Guest Log: -rw-r--r--. 1 atlas atlas      8623 Jun  7 08:08 runtime_log.err
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas       670 Jun  7 08:08 qpVNDmvZvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaKnKDmnjHwfn.diag
2025-06-07 02:10:58 (39676): Guest Log: Looking for outputfile HITS.45006595._052963.pool.root.1
2025-06-07 02:10:58 (39676): Guest Log: HITS file was successfully produced
2025-06-07 02:10:58 (39676): Guest Log: -rw-------. 1 atlas atlas 174702287 Jun  7 08:05 /home/atlas/RunAtlas/HITS.45006595._052963.pool.root.1
2025-06-07 02:11:01 (39676): Guest Log: Successfully finished the ATLAS job!
2025-06-07 02:11:01 (39676): Guest Log: Copying the results back to the shared directory!
2025-06-07 02:11:01 (39676): Guest Log:  *** Contents of shared directory: ***
2025-06-07 02:11:01 (39676): Guest Log: total 382532
2025-06-07 02:11:01 (39676): Guest Log: -rwxrwxrwx. 1 root root 214173585 Jun  6 23:25 ATLAS.root_0
2025-06-07 02:11:01 (39676): Guest Log: -rwxrwxrwx. 1 root root 174702287 Jun  7  2025 HITS.pool.root.1
2025-06-07 02:11:01 (39676): Guest Log: -rwxrwxrwx. 1 root root      9043 Jun  6 23:25 init_data.xml
2025-06-07 02:11:01 (39676): Guest Log: -rwxrwxrwx. 1 root root    508882 Jun  4 10:34 input.tar.gz
2025-06-07 02:11:01 (39676): Guest Log: -rwxrwxrwx. 1 root root   2293760 Jun  7  2025 result.tar.gz
2025-06-07 02:11:01 (39676): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 10:34 start_atlas.sh
2025-06-07 02:11:01 (39676): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-07 02:11:01 (39676): VM Completion File Detected.
2025-06-07 02:11:01 (39676): Powering off VM.
2025-06-07 02:11:01 (39676): Successfully stopped VM.
2025-06-07 02:11:01 (39676): Deregistering VM. (boinc_9a0424fbe967b663, slot#3)
2025-06-07 02:11:02 (39676): Removing network bandwidth throttle group from VM.
2025-06-07 02:11:02 (39676): Removing VM from VirtualBox.
02:11:07 (39676): called boinc_finish(0)

</stderr_txt>
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