Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:07:15 (874918): wrapper (7.7.26015): starting
12:07:15 (874918): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 12:07:15] Arguments: --nthreads 12
[2025-06-05 12:07:15] Threads: 12
[2025-06-05 12:07:15] Checking for CVMFS
[2025-06-05 12:07:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 12:07:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 12:07:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 12:07:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 12:07:54] 2.12.7.0 3695 888 53336 146818 0 186 3515400 4096001 2492 130560 0 2408091 99.997 236571 190 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 0
[2025-06-05 12:07:54] CVMFS is ok
[2025-06-05 12:07:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 12:07:54] Checking for apptainer binary...
[2025-06-05 12:07:54] apptainer is not installed, using version from CVMFS
[2025-06-05 12:07:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 12:07:54] dualxeon2
[2025-06-05 12:07:54] apptainer works
[2025-06-05 12:07:54] Set ATHENA_PROC_NUMBER=12
[2025-06-05 12:07:54] Set ATHENA_CORE_NUMBER=12
[2025-06-05 12:07:54] Starting ATLAS job with PandaID=6667440326
[2025-06-05 12:07:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:33:31]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:33:31] 2025-06-05 14:33:17,551 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/0/PanDA_Pilot-6667440326/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,552 | INFO     | extracted standard info from prmon json
[2025-06-05 14:33:31] 2025-06-05 14:33:17,552 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:33:31] 2025-06-05 14:33:17,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:33:31] 2025-06-05 14:33:17,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:33:31] 2025-06-05 14:33:17,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:33:31] 2025-06-05 14:33:17,556 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:33:31] 2025-06-05 14:33:17,556 | INFO     | sum of square deviations: 906703512.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,557 | INFO     | sum of deviations: 16238201586.000004
[2025-06-05 14:33:31] 2025-06-05 14:33:17,557 | INFO     | mean x: 1749129634.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,557 | INFO     | mean y: 2624228.916083916
[2025-06-05 14:33:31] 2025-06-05 14:33:17,557 | INFO     | -- intersect: -31322631735.172874
[2025-06-05 14:33:31] 2025-06-05 14:33:17,558 | INFO     | intersect: -31322631735.172874
[2025-06-05 14:33:31] 2025-06-05 14:33:17,558 | INFO     | chi2: 2.2145973708730544
[2025-06-05 14:33:31] 2025-06-05 14:33:17,558 | INFO     | sum of square deviations: 814878534.5
[2025-06-05 14:33:31] 2025-06-05 14:33:17,559 | INFO     | sum of deviations: 25689079602.499996
[2025-06-05 14:33:31] 2025-06-05 14:33:17,559 | INFO     | mean x: 1749129481.5
[2025-06-05 14:33:31] 2025-06-05 14:33:17,559 | INFO     | mean y: 2639441.804347826
[2025-06-05 14:33:31] 2025-06-05 14:33:17,559 | INFO     | -- intersect: -55138740019.0054
[2025-06-05 14:33:31] 2025-06-05 14:33:17,560 | INFO     | intersect: -55138740019.0054
[2025-06-05 14:33:31] 2025-06-05 14:33:17,560 | INFO     | chi2: 1.4158648001071552
[2025-06-05 14:33:31] 2025-06-05 14:33:17,560 | INFO     | current chi2=1.4158648001071552 (change=36.06671719523523 %)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,560 | INFO     | sum of square deviations: 729472282.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,561 | INFO     | sum of deviations: 24632610629.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,561 | INFO     | mean x: 1749129329.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,562 | INFO     | mean y: 2637553.052631579
[2025-06-05 14:33:31] 2025-06-05 14:33:17,562 | INFO     | -- intersect: -59061459554.09562
[2025-06-05 14:33:31] 2025-06-05 14:33:17,562 | INFO     | intersect: -59061459554.09562
[2025-06-05 14:33:31] 2025-06-05 14:33:17,562 | INFO     | chi2: 1.4167538311640375
[2025-06-05 14:33:31] 2025-06-05 14:33:17,562 | INFO     | current chi2=1.4167538311640375 (change=-0.06279067442138778 %)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,562 | INFO     | right removable region: 132
[2025-06-05 14:33:31] 2025-06-05 14:33:17,563 | INFO     | sum of square deviations: 814878534.5
[2025-06-05 14:33:31] 2025-06-05 14:33:17,564 | INFO     | sum of deviations: -7362245641.5
[2025-06-05 14:33:31] 2025-06-05 14:33:17,564 | INFO     | mean x: 1749129786.5
[2025-06-05 14:33:31] 2025-06-05 14:33:17,564 | INFO     | mean y: 2662887.8913043477
[2025-06-05 14:33:31] 2025-06-05 14:33:17,564 | INFO     | -- intersect: 15805660024.119648
[2025-06-05 14:33:31] 2025-06-05 14:33:17,564 | INFO     | intersect: 15805660024.119648
[2025-06-05 14:33:31] 2025-06-05 14:33:17,564 | INFO     | chi2: 0.8287452517683342
[2025-06-05 14:33:31] 2025-06-05 14:33:17,565 | INFO     | current chi2=0.8287452517683342 (change=62.57806214943621 %)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,565 | INFO     | sum of square deviations: 729472282.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,566 | INFO     | sum of deviations: -6671945211.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,566 | INFO     | mean x: 1749129939.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,566 | INFO     | mean y: 2661637.5639097746
[2025-06-05 14:33:31] 2025-06-05 14:33:17,566 | INFO     | -- intersect: 16000663765.803474
[2025-06-05 14:33:31] 2025-06-05 14:33:17,566 | INFO     | intersect: 16000663765.803474
[2025-06-05 14:33:31] 2025-06-05 14:33:17,566 | INFO     | chi2: 0.8285486823482582
[2025-06-05 14:33:31] 2025-06-05 14:33:17,567 | INFO     | current chi2=0.8285486823482582 (change=0.023718919614517855 %)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,567 | INFO     | left removable region: 20
[2025-06-05 14:33:31] 2025-06-05 14:33:17,567 | INFO     | sum of square deviations: 435610028.0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,568 | INFO     | sum of deviations: 1960754903.0000002
[2025-06-05 14:33:31] 2025-06-05 14:33:17,568 | INFO     | mean x: 1749129908.5
[2025-06-05 14:33:31] 2025-06-05 14:33:17,568 | INFO     | mean y: 2680716.714285714
[2025-06-05 14:33:31] 2025-06-05 14:33:17,568 | INFO     | -- intersect: -7870450808.3371
[2025-06-05 14:33:31] 2025-06-05 14:33:17,568 | INFO     | intersect: -7870450808.3371
[2025-06-05 14:33:31] 2025-06-05 14:33:17,569 | INFO     | chi2: 0.000431996709961898
[2025-06-05 14:33:31] 2025-06-05 14:33:17,569 | INFO     | -- intersect: -7870450808.3371
[2025-06-05 14:33:31] 2025-06-05 14:33:17,569 | INFO     | current memory leak: 4.50 B/s (using 112 data points, chi2=0.00)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,569 | INFO     | ..............................
[2025-06-05 14:33:31] 2025-06-05 14:33:17,569 | INFO     | . Timing measurements:
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . get job = 0 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . initial setup = 1 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . payload setup = 4 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . stage-in = 0 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . payload execution = 8682 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . stage-out = 1 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | . log creation = 0 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,570 | INFO     | ..............................
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | 
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | job summary report
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | --------------------------------------------------
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | PanDA job id: 6667440326
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | task id: 44871837
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | errors: (none)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,704 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | pilot state: finished 
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | transexitcode: 0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | exeerrorcode: 0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | exeerrordiag: 
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | exitcode: 0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | exitmsg: OK
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | cpuconsumptiontime: 69545 s
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | nevents: 400
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | neventsw: 0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,705 | INFO     | pid: 885419
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | pgrp: 885419
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | corecount: 12
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | event service: False
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | sizes: {0: 2397415, 3: 2397621, 11: 2397649, 8691: 2425492, 8692: 2425491, 8693: 2434534, 8696: 2434718, 8703: 2434888}
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | --------------------------------------------------
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | 
[2025-06-05 14:33:31] 2025-06-05 14:33:17,706 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/0
[2025-06-05 14:33:31] 2025-06-05 14:33:17,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,769 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:33:31] 2025-06-05 14:33:17,769 | INFO     | job 6667440326 has completed (purged errors)
[2025-06-05 14:33:31] 2025-06-05 14:33:17,769 | INFO     | overall cleanup function is called
[2025-06-05 14:33:31] 2025-06-05 14:33:18,778 | INFO     | --- collectZombieJob: --- 10, [885419]
[2025-06-05 14:33:31] 2025-06-05 14:33:18,778 | INFO     | zombie collector waiting for pid 885419
[2025-06-05 14:33:31] 2025-06-05 14:33:18,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:33:31] 2025-06-05 14:33:18,778 | INFO     | collected zombie processes
[2025-06-05 14:33:31] 2025-06-05 14:33:18,778 | INFO     | will attempt to kill all subprocesses of pid=885419
[2025-06-05 14:33:31] 2025-06-05 14:33:19,035 | INFO     | process IDs to be killed: [885419] (in reverse order)
[2025-06-05 14:33:31] 2025-06-05 14:33:19,127 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:33:31] 2025-06-05 14:33:19,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:33:31] 2025-06-05 14:33:19,132 | INFO     | did not find any defunct processes belonging to 885419
[2025-06-05 14:33:31] 2025-06-05 14:33:19,140 | INFO     | did not find any defunct processes belonging to 885419
[2025-06-05 14:33:31] 2025-06-05 14:33:19,140 | INFO     | ready for new job
[2025-06-05 14:33:31] 2025-06-05 14:33:19,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:33:31] 2025-06-05 14:33:19,142 | INFO     | **************************************
[2025-06-05 14:33:31] 2025-06-05 14:33:19,142 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:33:31] 2025-06-05 14:33:19,142 | INFO     | **************************************
[2025-06-05 14:33:31] 2025-06-05 14:33:19,142 | INFO     | 
[2025-06-05 14:33:31] 2025-06-05 14:33:19,144 | INFO     | architecture information:
[2025-06-05 14:33:31] 2025-06-05 14:33:19,144 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:33:31] 2025-06-05 14:33:19,173 | INFO     | cat /etc/os-release:
[2025-06-05 14:33:31] NAME="CentOS Linux"
[2025-06-05 14:33:31] VERSION="7 (Core)"
[2025-06-05 14:33:31] ID="centos"
[2025-06-05 14:33:31] ID_LIKE="rhel fedora"
[2025-06-05 14:33:31] VERSION_ID="7"
[2025-06-05 14:33:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:33:31] ANSI_COLOR="0;31"
[2025-06-05 14:33:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:33:31] HOME_URL="https://www.centos.org/"
[2025-06-05 14:33:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:33:31] 
[2025-06-05 14:33:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:33:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:33:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:33:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:33:31] 
[2025-06-05 14:33:31] 2025-06-05 14:33:19,173 | INFO     | **************************************
[2025-06-05 14:33:31] 2025-06-05 14:33:19,676 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/0
[2025-06-05 14:33:31] 2025-06-05 14:33:19,692 | INFO     | sufficient remaining disk space (86560997376 B)
[2025-06-05 14:33:31] 2025-06-05 14:33:19,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:33:31] 2025-06-05 14:33:19,692 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:33:31] 2025-06-05 14:33:19,692 | INFO     | update_server=False
[2025-06-05 14:33:31] 2025-06-05 14:33:19,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:33:31] 2025-06-05 14:33:19,693 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:33:31] 2025-06-05 14:33:19,693 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:33:31] 2025-06-05 14:33:19,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:33:31] 2025-06-05 14:33:19,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:33:31] 2025-06-05 14:33:19,694 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:33:31] 2025-06-05 14:33:19,694 | INFO     | aborting loop
[2025-06-05 14:33:31] 2025-06-05 14:33:19,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:33:31] 2025-06-05 14:33:19,865 | INFO     | all job control threads have been joined
[2025-06-05 14:33:31] 2025-06-05 14:33:20,466 | INFO     | all payload control threads have been joined
[2025-06-05 14:33:31] 2025-06-05 14:33:20,688 | INFO     | all data control threads have been joined
[2025-06-05 14:33:31] 2025-06-05 14:33:20,698 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:20,699 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:20,699 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:20,760 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:20,870 | INFO     | [job] control thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,001 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,072 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:33:31] 2025-06-05 14:33:21,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:33:31] 2025-06-05 14:33:21,471 | INFO     | [payload] control thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,693 | INFO     | [data] control thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,763 | INFO     | [job] validate thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,864 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,866 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:21,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:22,170 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:23,171 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:25,229 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:33:31] 2025-06-05 14:33:26,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134523063506752)>', '<ExcThread(monitor, started 134522561603328)>']
[2025-06-05 14:33:31] 2025-06-05 14:33:26,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:33:31] 2025-06-05 14:33:26,729 | INFO     | [monitor] control thread has ended
[2025-06-05 14:33:31] 2025-06-05 14:33:31,421 | INFO     | all workflow threads have been joined
[2025-06-05 14:33:31] 2025-06-05 14:33:31,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:33:31] 2025-06-05 14:33:31,421 | INFO     | traces error code: 0
[2025-06-05 14:33:31] 2025-06-05 14:33:31,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:33:31] 2025-06-05 14:33:31,576 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:33:31] 2025-06-05 14:33:31,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:33:31] 2025-06-05 14:33:31,585 [wrapper] pilotpid: 878693
[2025-06-05 14:33:31] 2025-06-05 14:33:31,591 [wrapper] Pilot exit status: 0
[2025-06-05 14:33:31] 2025-06-05 14:33:31,612 [wrapper] pandaids: 6667440326
[2025-06-05 14:33:31] 2025-06-05 14:33:31,676 [wrapper] cleanup supervisor_pilot 1003124 878694
[2025-06-05 14:33:31] 2025-06-05 14:33:31,681 [wrapper] Test setup, not cleaning
[2025-06-05 14:33:31] 2025-06-05 14:33:31,684 [wrapper] apfmon messages muted
[2025-06-05 14:33:31] 2025-06-05 14:33:31,688 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:33:31] 2025-06-05 14:33:31,692 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:33:31]  *** Error codes and diagnostics ***
[2025-06-05 14:33:31]     "exeErrorCode": 0,
[2025-06-05 14:33:31]     "exeErrorDiag": "",
[2025-06-05 14:33:31]     "pilotErrorCode": 0,
[2025-06-05 14:33:31]     "pilotErrorDiag": "",
[2025-06-05 14:33:31]  *** Listing of results directory ***
[2025-06-05 14:33:31] total 419908
[2025-06-05 14:33:31] -rw-r--r-- 1 boinc boinc    495897 Mai 27 19:34 pilot3.tar.gz
[2025-06-05 14:33:31] -rwx------ 1 boinc boinc     37140 Mai 27 20:10 runpilot2-wrapper.sh
[2025-06-05 14:33:31] -rw-r--r-- 1 boinc boinc      5111 Mai 27 20:10 queuedata.json
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc       100 Jun  5 12:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:33:31] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 12:07 run_atlas
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc       105 Jun  5 12:07 job.xml
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc      6589 Jun  5 12:07 init_data.xml
[2025-06-05 14:33:31] -rw-r--r-- 2 boinc boinc 223624557 Jun  5 12:07 EVNT.44871834._002861.pool.root.1
[2025-06-05 14:33:31] -rw-r--r-- 2 boinc boinc     15093 Jun  5 12:07 start_atlas.sh
[2025-06-05 14:33:31] drwxrwx--x 2 boinc boinc      4096 Jun  5 12:07 shared
[2025-06-05 14:33:31] -rw-r--r-- 2 boinc boinc    508877 Jun  5 12:07 input.tar.gz
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc         0 Jun  5 12:07 boinc_lockfile
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc      2559 Jun  5 12:07 pandaJob.out
[2025-06-05 14:33:31] -rw------- 1 boinc boinc    982836 Jun  5 12:08 agis_schedconf.cvmfs.json
[2025-06-05 14:33:31] -rw------- 1 boinc boinc   1598969 Jun  5 12:08 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:33:31] drwx------ 4 boinc boinc      4096 Jun  5 12:08 pilot3
[2025-06-05 14:33:31] -rw------- 1 boinc boinc 200017849 Jun  5 14:32 HITS.44871837._072882.pool.root.1
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc       530 Jun  5 14:32 boinc_task_state.xml
[2025-06-05 14:33:31] -rw------- 1 boinc boinc        95 Jun  5 14:32 pilot_heartbeat.json
[2025-06-05 14:33:31] -rw------- 1 boinc boinc      1036 Jun  5 14:33 memory_monitor_summary.json
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc        27 Jun  5 14:33 wrapper_checkpoint.txt
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 14:33 boinc_mmap_file
[2025-06-05 14:33:31] -rw------- 1 boinc boinc    415958 Jun  5 14:33 log.44871837._072882.job.log.tgz.1
[2025-06-05 14:33:31] -rw------- 1 boinc boinc      7664 Jun  5 14:33 heartbeat.json
[2025-06-05 14:33:31] -rw------- 1 boinc boinc      4499 Jun  5 14:33 pilotlog.txt
[2025-06-05 14:33:31] -rw------- 1 boinc boinc    842800 Jun  5 14:33 log.44871837._072882.job.log.1
[2025-06-05 14:33:31] -rw------- 1 boinc boinc       357 Jun  5 14:33 output.list
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc       620 Jun  5 14:33 runtime_log
[2025-06-05 14:33:31] -rw------- 1 boinc boinc   1280000 Jun  5 14:33 result.tar.gz
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc      8968 Jun  5 14:33 runtime_log.err
[2025-06-05 14:33:31] -rw------- 1 boinc boinc       654 Jun  5 14:33 ORkMDmsnFe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkJaKDmVIUOOm.diag
[2025-06-05 14:33:31] -rw-rw-r-- 1 boinc boinc     20639 Jun  5 14:33 stderr.txt
[2025-06-05 14:33:31] HITS file was successfully produced:
[2025-06-05 14:33:31] -rw------- 1 boinc boinc 200017849 Jun  5 14:32 shared/HITS.pool.root.1
[2025-06-05 14:33:31]  *** Contents of shared directory: ***
[2025-06-05 14:33:31] total 415488
[2025-06-05 14:33:31] -rw-r--r-- 2 boinc boinc 223624557 Jun  5 12:07 ATLAS.root_0
[2025-06-05 14:33:31] -rw-r--r-- 2 boinc boinc     15093 Jun  5 12:07 start_atlas.sh
[2025-06-05 14:33:31] -rw-r--r-- 2 boinc boinc    508877 Jun  5 12:07 input.tar.gz
[2025-06-05 14:33:31] -rw------- 1 boinc boinc 200017849 Jun  5 14:32 HITS.pool.root.1
[2025-06-05 14:33:31] -rw------- 1 boinc boinc   1280000 Jun  5 14:33 result.tar.gz
14:33:33 (874918): run_atlas exited; CPU time 69671.886535
14:33:33 (874918): called boinc_finish(0)

</stderr_txt>
]]>

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