Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:29:07 (1641): wrapper (7.7.26015): starting
20:29:07 (1641): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:29:07] Arguments: --nthreads 8
[2025-06-04 20:29:07] Threads: 8
[2025-06-04 20:29:07] Checking for CVMFS
[2025-06-04 20:29:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:29:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:29:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:29:10] 2.11.2.0 23601 33584 97072 146791 0 16 22517647 25165825 4687 130560 0 17770202 99.804 19697702 2146 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 20:29:10] CVMFS is ok
[2025-06-04 20:29:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:29:10] Checking for apptainer binary...
[2025-06-04 20:29:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:29:10] Running /usr/bin/apptainer --version
[2025-06-04 20:29:10] apptainer version 1.3.2-1.el7
[2025-06-04 20:29:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:59:35] cg-vwn275.simple-grid.lan
[2025-06-04 20:59:35] apptainer works
[2025-06-04 20:59:35] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:59:35] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:59:35] Starting ATLAS job with PandaID=6678362729
[2025-06-04 20:59:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:06:12]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:06:12] 2025-06-04 23:04:01,776 | INFO     | extracted standard info from prmon json
[2025-06-05 01:06:12] 2025-06-04 23:04:01,776 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:06:12] 2025-06-04 23:04:01,776 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:06:12] 2025-06-04 23:04:01,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:06:12] 2025-06-04 23:04:01,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:06:12] 2025-06-04 23:04:01,782 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:06:12] 2025-06-04 23:04:01,783 | INFO     | sum of square deviations: 3675146117.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,785 | INFO     | sum of deviations: 94284344634.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,786 | INFO     | mean x: 1749071192.5
[2025-06-05 01:06:12] 2025-06-04 23:04:01,786 | INFO     | mean y: 2424508.7192982454
[2025-06-05 01:06:12] 2025-06-04 23:04:01,789 | INFO     | -- intersect: -44869269256.122475
[2025-06-05 01:06:12] 2025-06-04 23:04:01,789 | INFO     | intersect: -44869269256.122475
[2025-06-05 01:06:12] 2025-06-04 23:04:01,790 | INFO     | chi2: 6.842989576226701
[2025-06-05 01:06:12] 2025-06-04 23:04:01,791 | INFO     | sum of square deviations: 3438620752.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,792 | INFO     | sum of deviations: 107151507246.00002
[2025-06-05 01:06:12] 2025-06-04 23:04:01,793 | INFO     | mean x: 1749071040.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,793 | INFO     | mean y: 2432632.2286995514
[2025-06-05 01:06:12] 2025-06-04 23:04:01,793 | INFO     | -- intersect: -54500698632.631645
[2025-06-05 01:06:12] 2025-06-04 23:04:01,793 | INFO     | intersect: -54500698632.631645
[2025-06-05 01:06:12] 2025-06-04 23:04:01,794 | INFO     | chi2: 6.126841135656069
[2025-06-05 01:06:12] 2025-06-04 23:04:01,794 | INFO     | current chi2=6.126841135656069 (change=10.465432287937578 %)
[2025-06-05 01:06:12] 2025-06-04 23:04:01,794 | INFO     | right removable region: 222
[2025-06-05 01:06:12] 2025-06-04 23:04:01,794 | INFO     | sum of square deviations: 3438620752.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,796 | INFO     | sum of deviations: 16327280739.999996
[2025-06-05 01:06:12] 2025-06-04 23:04:01,796 | INFO     | mean x: 1749071345.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,796 | INFO     | mean y: 2474724.66367713
[2025-06-05 01:06:12] 2025-06-04 23:04:01,797 | INFO     | -- intersect: -8302476866.027004
[2025-06-05 01:06:12] 2025-06-04 23:04:01,797 | INFO     | intersect: -8302476866.027004
[2025-06-05 01:06:12] 2025-06-04 23:04:01,797 | INFO     | chi2: 2.0963795802640606
[2025-06-05 01:06:12] 2025-06-04 23:04:01,797 | INFO     | current chi2=2.0963795802640606 (change=69.36456563448358 %)
[2025-06-05 01:06:12] 2025-06-04 23:04:01,798 | INFO     | sum of square deviations: 3212467674.5
[2025-06-05 01:06:12] 2025-06-04 23:04:01,800 | INFO     | sum of deviations: -21930128696.500004
[2025-06-05 01:06:12] 2025-06-04 23:04:01,800 | INFO     | mean x: 1749071497.5
[2025-06-05 01:06:12] 2025-06-04 23:04:01,800 | INFO     | mean y: 2500402.637614679
[2025-06-05 01:06:12] 2025-06-04 23:04:01,800 | INFO     | -- intersect: 11942655736.815434
[2025-06-05 01:06:12] 2025-06-04 23:04:01,800 | INFO     | intersect: 11942655736.815434
[2025-06-05 01:06:12] 2025-06-04 23:04:01,801 | INFO     | chi2: 0.8799792404172739
[2025-06-05 01:06:12] 2025-06-04 23:04:01,801 | INFO     | current chi2=0.8799792404172739 (change=58.02385938588318 %)
[2025-06-05 01:06:12] 2025-06-04 23:04:01,801 | INFO     | sum of square deviations: 2996454322.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,803 | INFO     | sum of deviations: -29484865511.000004
[2025-06-05 01:06:12] 2025-06-04 23:04:01,803 | INFO     | mean x: 1749071650.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,803 | INFO     | mean y: 2505711.427230047
[2025-06-05 01:06:12] 2025-06-04 23:04:01,803 | INFO     | -- intersect: 17213227727.350178
[2025-06-05 01:06:12] 2025-06-04 23:04:01,804 | INFO     | intersect: 17213227727.350178
[2025-06-05 01:06:12] 2025-06-04 23:04:01,804 | INFO     | chi2: 0.8156131161792629
[2025-06-05 01:06:12] 2025-06-04 23:04:01,804 | INFO     | current chi2=0.8156131161792629 (change=7.314504852124637 %)
[2025-06-05 01:06:12] 2025-06-04 23:04:01,804 | INFO     | left removable region: 30
[2025-06-05 01:06:12] 2025-06-04 23:04:01,805 | INFO     | sum of square deviations: 2194675568.0
[2025-06-05 01:06:12] 2025-06-04 23:04:01,806 | INFO     | sum of deviations: -11599878309.499998
[2025-06-05 01:06:12] 2025-06-04 23:04:01,807 | INFO     | mean x: 1749071924.5
[2025-06-05 01:06:12] 2025-06-04 23:04:01,807 | INFO     | mean y: 2513789.9427083335
[2025-06-05 01:06:12] 2025-06-04 23:04:01,807 | INFO     | -- intersect: 9247170164.029144
[2025-06-05 01:06:12] 2025-06-04 23:04:01,807 | INFO     | intersect: 9247170164.029144
[2025-06-05 01:06:12] 2025-06-04 23:04:01,807 | INFO     | chi2: 0.02567673298145464
[2025-06-05 01:06:12] 2025-06-04 23:04:01,808 | INFO     | -- intersect: 9247170164.029144
[2025-06-05 01:06:12] 2025-06-04 23:04:01,808 | INFO     | current memory leak: -5.29 B/s (using 192 data points, chi2=0.03)
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | ..............................
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . Timing measurements:
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . get job = 0 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . initial setup = 10 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . payload setup = 152 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . stage-in = 0 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . payload execution = 14026 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,809 | INFO     | . stage-out = 5 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,810 | INFO     | . log creation = 1 s
[2025-06-05 01:06:12] 2025-06-04 23:04:01,810 | INFO     | ..............................
[2025-06-05 01:06:12] 2025-06-04 23:04:02,320 | INFO     | 
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | job summary report
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | --------------------------------------------------
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | PanDA job id: 6678362729
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | task id: 45006595
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | errors: (none)
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | pilot state: finished 
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | transexitcode: 0
[2025-06-05 01:06:12] 2025-06-04 23:04:02,321 | INFO     | exeerrorcode: 0
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | exeerrordiag: 
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | exitcode: 0
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | exitmsg: OK
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | cpuconsumptiontime: 51827 s
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | nevents: 400
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | neventsw: 0
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | pid: 31218
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | pgrp: 31218
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | corecount: 8
[2025-06-05 01:06:12] 2025-06-04 23:04:02,322 | INFO     | event service: False
[2025-06-05 01:06:12] 2025-06-04 23:04:02,323 | INFO     | sizes: {0: 2397115, 1: 2397370, 12: 2397370, 23: 2397398, 33: 2397426, 44: 2397482, 55: 2397638, 66: 2397666, 76: 2397694, 87: 2397750, 97: 2397984, 98: 2398292, 1
[2025-06-05 01:06:12] 2025-06-04 23:04:02,323 | INFO     | --------------------------------------------------
[2025-06-05 01:06:12] 2025-06-04 23:04:02,323 | INFO     | 
[2025-06-05 01:06:12] 2025-06-04 23:04:02,323 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-05 01:06:12] 2025-06-04 23:04:02,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,790 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,790 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,790 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,790 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:06:12] 2025-06-04 23:04:02,792 | INFO     | job 6678362729 has completed (purged errors)
[2025-06-05 01:06:12] 2025-06-04 23:04:02,793 | INFO     | overall cleanup function is called
[2025-06-05 01:06:12] 2025-06-04 23:04:03,816 | INFO     | --- collectZombieJob: --- 10, [31218]
[2025-06-05 01:06:12] 2025-06-04 23:04:03,816 | INFO     | zombie collector waiting for pid 31218
[2025-06-05 01:06:12] 2025-06-04 23:04:03,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:06:12] 2025-06-04 23:04:03,817 | INFO     | collected zombie processes
[2025-06-05 01:06:12] 2025-06-04 23:04:03,817 | INFO     | will attempt to kill all subprocesses of pid=31218
[2025-06-05 01:06:12] 2025-06-04 23:04:03,940 | INFO     | process IDs to be killed: [31218] (in reverse order)
[2025-06-05 01:06:12] 2025-06-04 23:04:04,689 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:06:12] 2025-06-04 23:04:04,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:06:12] 2025-06-04 23:04:04,693 | INFO     | did not find any defunct processes belonging to 31218
[2025-06-05 01:06:12] 2025-06-04 23:04:04,696 | INFO     | did not find any defunct processes belonging to 31218
[2025-06-05 01:06:12] 2025-06-04 23:04:04,697 | INFO     | ready for new job
[2025-06-05 01:06:12] 2025-06-04 23:04:04,697 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:06:12] 2025-06-04 23:04:04,699 | INFO     | **************************************
[2025-06-05 01:06:12] 2025-06-04 23:04:04,699 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:06:12] 2025-06-04 23:04:04,699 | INFO     | **************************************
[2025-06-05 01:06:12] 2025-06-04 23:04:04,699 | INFO     | 
[2025-06-05 01:06:12] 2025-06-04 23:04:04,700 | INFO     | pilot is running in a VM
[2025-06-05 01:06:12] 2025-06-04 23:04:04,700 | INFO     | architecture information:
[2025-06-05 01:06:12] 2025-06-04 23:04:04,710 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:06:12] 2025-06-04 23:04:04,974 | INFO     | cat /etc/os-release:
[2025-06-05 01:06:12] NAME="CentOS Linux"
[2025-06-05 01:06:12] VERSION="7 (Core)"
[2025-06-05 01:06:12] ID="centos"
[2025-06-05 01:06:12] ID_LIKE="rhel fedora"
[2025-06-05 01:06:12] VERSION_ID="7"
[2025-06-05 01:06:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:06:12] ANSI_COLOR="0;31"
[2025-06-05 01:06:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:06:12] HOME_URL="https://www.centos.org/"
[2025-06-05 01:06:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:06:12] 
[2025-06-05 01:06:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:06:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:06:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:06:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:06:12] 
[2025-06-05 01:06:12] 2025-06-04 23:04:04,974 | INFO     | **************************************
[2025-06-05 01:06:12] 2025-06-04 23:04:05,478 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-05 01:06:12] 2025-06-04 23:04:05,681 | INFO     | sufficient remaining disk space (496889757696 B)
[2025-06-05 01:06:12] 2025-06-04 23:04:05,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:06:12] 2025-06-04 23:04:05,681 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:06:12] 2025-06-04 23:04:05,682 | INFO     | update_server=False
[2025-06-05 01:06:12] 2025-06-04 23:04:05,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:06:12] 2025-06-04 23:04:05,682 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:06:12] 2025-06-04 23:04:05,687 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:06:12] 2025-06-04 23:04:05,688 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:06:12] 2025-06-04 23:04:05,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:06:12] 2025-06-04 23:04:05,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:06:12] 2025-06-04 23:04:05,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:06:12] 2025-06-04 23:04:05,697 | INFO     | aborting loop
[2025-06-05 01:06:12] 2025-06-04 23:04:06,090 | INFO     | all payload control threads have been joined
[2025-06-05 01:06:12] 2025-06-04 23:04:06,433 | INFO     | all data control threads have been joined
[2025-06-05 01:06:12] 2025-06-04 23:04:06,687 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:06,702 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:06,741 | INFO     | all job control threads have been joined
[2025-06-05 01:06:12] 2025-06-04 23:04:06,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:06:12] 2025-06-04 23:04:06,985 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,096 | INFO     | [payload] control thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,287 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:06:12] 2025-06-04 23:04:07,354 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,426 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,439 | INFO     | [data] control thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,520 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,689 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,747 | INFO     | [job] control thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,933 | INFO     | [job] validate thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:07,967 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:08,062 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:11,330 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:06:12] 2025-06-04 23:04:11,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453357512512)>', '<ExcThread(monitor, started 140452527331072)>']
[2025-06-05 01:06:12] 2025-06-04 23:04:11,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:06:12] 2025-06-04 23:04:11,724 | INFO     | [monitor] control thread has ended
[2025-06-05 01:06:12] 2025-06-04 23:04:16,596 | INFO     | all workflow threads have been joined
[2025-06-05 01:06:12] 2025-06-04 23:04:16,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:06:12] 2025-06-04 23:04:16,597 | INFO     | traces error code: 0
[2025-06-05 01:06:12] 2025-06-04 23:04:16,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:06:12] 2025-06-04 23:04:16,997 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:06:12] 2025-06-04 23:04:17,081 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:06:12] 2025-06-04 23:04:17,172 [wrapper] pilotpid: 22582
[2025-06-05 01:06:12] 2025-06-04 23:04:17,215 [wrapper] Pilot exit status: 0
[2025-06-05 01:06:12] 2025-06-04 23:04:17,497 [wrapper] pandaids: 6678362729
[2025-06-05 01:06:12] 2025-06-04 23:04:18,595 [wrapper] cleanup supervisor_pilot 17990 22583
[2025-06-05 01:06:12] 2025-06-04 23:04:18,726 [wrapper] Test setup, not cleaning
[2025-06-05 01:06:12] 2025-06-04 23:04:18,842 [wrapper] apfmon messages muted
[2025-06-05 01:06:12] 2025-06-04 23:04:18,972 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:06:12] 2025-06-04 23:04:19,074 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:06:12]  *** Error codes and diagnostics ***
[2025-06-05 01:06:12]     "exeErrorCode": 0,
[2025-06-05 01:06:12]     "exeErrorDiag": "",
[2025-06-05 01:06:12]     "pilotErrorCode": 0,
[2025-06-05 01:06:12]     "pilotErrorDiag": "",
[2025-06-05 01:06:12]  *** Listing of results directory ***
[2025-06-05 01:06:12] total 392040
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:13 queuedata.json
[2025-06-05 01:06:12] -rwx------. 1 boinc boinc     37140 Jun  4 07:14 runpilot2-wrapper.sh
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc       100 Jun  4 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:06:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 20:29 run_atlas
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc       105 Jun  4 20:29 job.xml
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc      6390 Jun  4 20:29 init_data.xml
[2025-06-05 01:06:12] -rw-r--r--. 2 boinc boinc 214802496 Jun  4 20:29 EVNT.45006593._002130.pool.root.1
[2025-06-05 01:06:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:29 start_atlas.sh
[2025-06-05 01:06:12] drwxrwx--x. 2 boinc boinc        68 Jun  4 20:29 shared
[2025-06-05 01:06:12] -rw-r--r--. 2 boinc boinc    508885 Jun  4 20:29 input.tar.gz
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc         0 Jun  4 20:29 boinc_lockfile
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc      2525 Jun  4 20:59 pandaJob.out
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc    990984 Jun  4 21:02 agis_schedconf.cvmfs.json
[2025-06-05 01:06:12] drwx------. 4 boinc boinc      4096 Jun  4 21:02 pilot3
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc 179583847 Jun  5 01:01 HITS.45006595._053224.pool.root.1
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc       531 Jun  5 01:01 boinc_task_state.xml
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc      1016 Jun  5 01:02 memory_monitor_summary.json
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc   1598969 Jun  5 01:02 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc    390592 Jun  5 01:02 log.45006595._053224.job.log.tgz.1
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc        95 Jun  5 01:03 pilot_heartbeat.json
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc      7691 Jun  5 01:04 heartbeat.json
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc      4539 Jun  5 01:04 pilotlog.txt
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc   1231518 Jun  5 01:04 log.45006595._053224.job.log.1
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc       357 Jun  5 01:04 output.list
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc       620 Jun  5 01:04 runtime_log
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc   1638400 Jun  5 01:04 result.tar.gz
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc       657 Jun  5 01:04 sxMMDmxdvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZLnKDmEb4L7n.diag
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc      8659 Jun  5 01:04 runtime_log.err
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc      8192 Jun  5 01:06 boinc_mmap_file
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc        28 Jun  5 01:06 wrapper_checkpoint.txt
[2025-06-05 01:06:12] -rw-r--r--. 1 boinc boinc     20521 Jun  5 01:06 stderr.txt
[2025-06-05 01:06:12] HITS file was successfully produced:
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc 179583847 Jun  5 01:01 shared/HITS.pool.root.1
[2025-06-05 01:06:12]  *** Contents of shared directory: ***
[2025-06-05 01:06:12] total 387264
[2025-06-05 01:06:12] -rw-r--r--. 2 boinc boinc 214802496 Jun  4 20:29 ATLAS.root_0
[2025-06-05 01:06:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:29 start_atlas.sh
[2025-06-05 01:06:12] -rw-r--r--. 2 boinc boinc    508885 Jun  4 20:29 input.tar.gz
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc 179583847 Jun  5 01:01 HITS.pool.root.1
[2025-06-05 01:06:12] -rw-------. 1 boinc boinc   1638400 Jun  5 01:04 result.tar.gz
01:06:14 (1641): run_atlas exited; CPU time 52028.120434
01:06:14 (1641): called boinc_finish(0)

</stderr_txt>
]]>

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