Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:05:19 (9659): wrapper (7.7.26015): starting
22:05:19 (9659): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:05:19] Arguments: --nthreads 8
[2025-06-04 22:05:19] Threads: 8
[2025-06-04 22:05:19] Checking for CVMFS
[2025-06-04 22:05:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:05:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:05:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:05:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:05:21] 2.11.2.0 31527 33807 87940 146792 0 158 13041993 25165824 3569 130560 0 17600902 99.857 18576005 2002 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:05:21] CVMFS is ok
[2025-06-04 22:05:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:05:21] Checking for apptainer binary...
[2025-06-04 22:05:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:05:21] Running /usr/bin/apptainer --version
[2025-06-04 22:05:22] apptainer version 1.3.2-1.el7
[2025-06-04 22:05:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:05:23] cg-vwn469.simple-grid.lan
[2025-06-04 22:05:23] apptainer works
[2025-06-04 22:05:23] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:05:23] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:05:23] Starting ATLAS job with PandaID=6678756329
[2025-06-04 22:05:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:06:09]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:06:09] 2025-06-04 23:38:58,380 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:06:09] 2025-06-04 23:38:58,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:06:09] 2025-06-04 23:38:58,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:06:09] 2025-06-04 23:38:58,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:06:09] 2025-06-04 23:38:58,385 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:06:09] 2025-06-04 23:38:58,385 | INFO     | sum of square deviations: 2790348132.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,387 | INFO     | sum of deviations: 20366282036.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,388 | INFO     | mean x: 1749073917.5
[2025-06-05 03:06:09] 2025-06-04 23:38:58,388 | INFO     | mean y: 2459788.105769231
[2025-06-05 03:06:09] 2025-06-04 23:38:58,388 | INFO     | -- intersect: -12763736765.327154
[2025-06-05 03:06:09] 2025-06-04 23:38:58,388 | INFO     | intersect: -12763736765.327154
[2025-06-05 03:06:09] 2025-06-04 23:38:58,388 | INFO     | chi2: 2.2698242376993827
[2025-06-05 03:06:09] 2025-06-04 23:38:58,389 | INFO     | sum of square deviations: 2593916542.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,390 | INFO     | sum of deviations: 33345991417.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,390 | INFO     | mean x: 1749073765.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,391 | INFO     | mean y: 2469658.0098522166
[2025-06-05 03:06:09] 2025-06-04 23:38:58,391 | INFO     | -- intersect: -22482678885.134705
[2025-06-05 03:06:09] 2025-06-04 23:38:58,391 | INFO     | intersect: -22482678885.134705
[2025-06-05 03:06:09] 2025-06-04 23:38:58,391 | INFO     | chi2: 1.5010695638661464
[2025-06-05 03:06:09] 2025-06-04 23:38:58,391 | INFO     | current chi2=1.5010695638661464 (change=33.86846704097318 %)
[2025-06-05 03:06:09] 2025-06-04 23:38:58,392 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 03:06:09] 2025-06-04 23:38:58,393 | INFO     | sum of deviations: 32409457532.5
[2025-06-05 03:06:09] 2025-06-04 23:38:58,393 | INFO     | mean x: 1749073612.5
[2025-06-05 03:06:09] 2025-06-04 23:38:58,394 | INFO     | mean y: 2468894.0656565656
[2025-06-05 03:06:09] 2025-06-04 23:38:58,394 | INFO     | -- intersect: -23548942184.38622
[2025-06-05 03:06:09] 2025-06-04 23:38:58,394 | INFO     | intersect: -23548942184.38622
[2025-06-05 03:06:09] 2025-06-04 23:38:58,394 | INFO     | chi2: 1.501871839143005
[2025-06-05 03:06:09] 2025-06-04 23:38:58,394 | INFO     | current chi2=1.501871839143005 (change=-0.0534469085358226 %)
[2025-06-05 03:06:09] 2025-06-04 23:38:58,394 | INFO     | right removable region: 197
[2025-06-05 03:06:09] 2025-06-04 23:38:58,395 | INFO     | sum of square deviations: 2593916542.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,396 | INFO     | sum of deviations: -11014083750.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,397 | INFO     | mean x: 1749074070.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,397 | INFO     | mean y: 2483879.827586207
[2025-06-05 03:06:09] 2025-06-04 23:38:58,397 | INFO     | -- intersect: 7429264186.752883
[2025-06-05 03:06:09] 2025-06-04 23:38:58,397 | INFO     | intersect: 7429264186.752883
[2025-06-05 03:06:09] 2025-06-04 23:38:58,397 | INFO     | chi2: 0.820202066646617
[2025-06-05 03:06:09] 2025-06-04 23:38:58,398 | INFO     | current chi2=0.820202066646617 (change=63.864952491742436 %)
[2025-06-05 03:06:09] 2025-06-04 23:38:58,398 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 03:06:09] 2025-06-04 23:38:58,399 | INFO     | sum of deviations: -8279876052.999999
[2025-06-05 03:06:09] 2025-06-04 23:38:58,400 | INFO     | mean x: 1749074222.5
[2025-06-05 03:06:09] 2025-06-04 23:38:58,400 | INFO     | mean y: 2481607.737373737
[2025-06-05 03:06:09] 2025-06-04 23:38:58,400 | INFO     | -- intersect: 6019331239.22776
[2025-06-05 03:06:09] 2025-06-04 23:38:58,400 | INFO     | intersect: 6019331239.22776
[2025-06-05 03:06:09] 2025-06-04 23:38:58,400 | INFO     | chi2: 0.8016030618252161
[2025-06-05 03:06:09] 2025-06-04 23:38:58,401 | INFO     | current chi2=0.8016030618252161 (change=2.267612528391034 %)
[2025-06-05 03:06:09] 2025-06-04 23:38:58,401 | INFO     | left removable region: 20
[2025-06-05 03:06:09] 2025-06-04 23:38:58,401 | INFO     | sum of square deviations: 1719429448.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,402 | INFO     | sum of deviations: 3109484332.9999995
[2025-06-05 03:06:09] 2025-06-04 23:38:58,402 | INFO     | mean x: 1749074192.0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,403 | INFO     | mean y: 2493730.5197740113
[2025-06-05 03:06:09] 2025-06-04 23:38:58,403 | INFO     | -- intersect: -3160601331.9759994
[2025-06-05 03:06:09] 2025-06-04 23:38:58,403 | INFO     | intersect: -3160601331.9759994
[2025-06-05 03:06:09] 2025-06-04 23:38:58,404 | INFO     | chi2: 0.00028530851196723023
[2025-06-05 03:06:09] 2025-06-04 23:38:58,404 | INFO     | -- intersect: -3160601331.9759994
[2025-06-05 03:06:09] 2025-06-04 23:38:58,404 | INFO     | current memory leak: 1.81 B/s (using 177 data points, chi2=0.00)
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | ..............................
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | . Timing measurements:
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | . get job = 0 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | . initial setup = 2 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | . payload setup = 14 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | . stage-in = 0 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,409 | INFO     | . payload execution = 12656 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,410 | INFO     | . stage-out = 2 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,410 | INFO     | . log creation = 0 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,410 | INFO     | ..............................
[2025-06-05 03:06:09] 2025-06-04 23:38:58,574 | INFO     | 
[2025-06-05 03:06:09] 2025-06-04 23:38:58,574 | INFO     | job summary report
[2025-06-05 03:06:09] 2025-06-04 23:38:58,574 | INFO     | --------------------------------------------------
[2025-06-05 03:06:09] 2025-06-04 23:38:58,574 | INFO     | PanDA job id: 6678756329
[2025-06-05 03:06:09] 2025-06-04 23:38:58,574 | INFO     | task id: 45006595
[2025-06-05 03:06:09] 2025-06-04 23:38:58,574 | INFO     | errors: (none)
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | pilot state: finished 
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | transexitcode: 0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | exeerrorcode: 0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | exeerrordiag: 
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | exitcode: 0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | exitmsg: OK
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | cpuconsumptiontime: 47942 s
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | nevents: 400
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | neventsw: 0
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | pid: 21887
[2025-06-05 03:06:09] 2025-06-04 23:38:58,575 | INFO     | pgrp: 21887
[2025-06-05 03:06:09] 2025-06-04 23:38:58,576 | INFO     | corecount: 8
[2025-06-05 03:06:09] 2025-06-04 23:38:58,576 | INFO     | event service: False
[2025-06-05 03:06:09] 2025-06-04 23:38:58,576 | INFO     | sizes: {0: 2397119, 1: 2397318, 2: 2397318, 8: 2397552, 12: 2397580, 12675: 2426763, 12676: 2426890, 12678: 2435887, 12681: 2435943, 12771: 2436113}
[2025-06-05 03:06:09] 2025-06-04 23:38:58,576 | INFO     | --------------------------------------------------
[2025-06-05 03:06:09] 2025-06-04 23:38:58,576 | INFO     | 
[2025-06-05 03:06:09] 2025-06-04 23:38:58,576 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-05 03:06:09] 2025-06-04 23:38:59,233 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,234 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,234 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,234 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,236 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:06:09] 2025-06-04 23:38:59,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,236 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:06:09] 2025-06-04 23:38:59,236 | INFO     | job 6678756329 has completed (purged errors)
[2025-06-05 03:06:09] 2025-06-04 23:38:59,236 | INFO     | overall cleanup function is called
[2025-06-05 03:06:09] 2025-06-04 23:38:59,892 | INFO     | PID=13342 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 03:06:09] 2025-06-04 23:38:59,892 | INFO     | .. there are 9 such processes running
[2025-06-05 03:06:09] 2025-06-04 23:39:00,245 | INFO     | --- collectZombieJob: --- 10, [21887]
[2025-06-05 03:06:09] 2025-06-04 23:39:00,245 | INFO     | zombie collector waiting for pid 21887
[2025-06-05 03:06:09] 2025-06-04 23:39:00,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:06:09] 2025-06-04 23:39:00,245 | INFO     | collected zombie processes
[2025-06-05 03:06:09] 2025-06-04 23:39:00,246 | INFO     | will attempt to kill all subprocesses of pid=21887
[2025-06-05 03:06:09] 2025-06-04 23:39:00,376 | INFO     | process IDs to be killed: [21887] (in reverse order)
[2025-06-05 03:06:09] 2025-06-04 23:39:00,885 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:06:09] 2025-06-04 23:39:00,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:06:09] 2025-06-04 23:39:00,888 | INFO     | did not find any defunct processes belonging to 21887
[2025-06-05 03:06:09] 2025-06-04 23:39:00,891 | INFO     | did not find any defunct processes belonging to 21887
[2025-06-05 03:06:09] 2025-06-04 23:39:00,892 | INFO     | ready for new job
[2025-06-05 03:06:09] 2025-06-04 23:39:00,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:06:09] 2025-06-04 23:39:00,894 | INFO     | **************************************
[2025-06-05 03:06:09] 2025-06-04 23:39:00,894 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:06:09] 2025-06-04 23:39:00,894 | INFO     | **************************************
[2025-06-05 03:06:09] 2025-06-04 23:39:00,894 | INFO     | 
[2025-06-05 03:06:09] 2025-06-04 23:39:00,895 | INFO     | pilot is running in a VM
[2025-06-05 03:06:09] 2025-06-04 23:39:00,895 | INFO     | architecture information:
[2025-06-05 03:06:09] 2025-06-04 23:39:00,896 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:06:09] 2025-06-04 23:39:01,041 | INFO     | cat /etc/os-release:
[2025-06-05 03:06:09] NAME="CentOS Linux"
[2025-06-05 03:06:09] VERSION="7 (Core)"
[2025-06-05 03:06:09] ID="centos"
[2025-06-05 03:06:09] ID_LIKE="rhel fedora"
[2025-06-05 03:06:09] VERSION_ID="7"
[2025-06-05 03:06:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:06:09] ANSI_COLOR="0;31"
[2025-06-05 03:06:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:06:09] HOME_URL="https://www.centos.org/"
[2025-06-05 03:06:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:06:09] 
[2025-06-05 03:06:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:06:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:06:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:06:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:06:09] 
[2025-06-05 03:06:09] 2025-06-04 23:39:01,042 | INFO     | **************************************
[2025-06-05 03:06:09] 2025-06-04 23:39:01,545 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-05 03:06:09] 2025-06-04 23:39:01,865 | INFO     | sufficient remaining disk space (497130930176 B)
[2025-06-05 03:06:09] 2025-06-04 23:39:01,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:06:09] 2025-06-04 23:39:01,866 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:06:09] 2025-06-04 23:39:01,866 | INFO     | update_server=False
[2025-06-05 03:06:09] 2025-06-04 23:39:01,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:06:09] 2025-06-04 23:39:01,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:06:09] 2025-06-04 23:39:01,867 | INFO     | aborting loop
[2025-06-05 03:06:09] 2025-06-04 23:39:01,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:06:09] 2025-06-04 23:39:01,900 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:06:09] 2025-06-04 23:39:01,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:06:09] 2025-06-04 23:39:01,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:06:09] 2025-06-04 23:39:02,420 | INFO     | all payload control threads have been joined
[2025-06-05 03:06:09] 2025-06-04 23:39:02,463 | INFO     | all data control threads have been joined
[2025-06-05 03:06:09] 2025-06-04 23:39:02,872 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:02,875 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:02,919 | INFO     | all job control threads have been joined
[2025-06-05 03:06:09] 2025-06-04 23:39:03,198 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,214 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,285 | INFO     | [job] validate thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,426 | INFO     | [payload] control thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,469 | INFO     | [data] control thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,514 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:06:09] 2025-06-04 23:39:03,648 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,746 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,783 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,879 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:03,925 | INFO     | [job] control thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:04,114 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:04,591 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:04,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:06:09] 2025-06-04 23:39:08,924 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:06:09] 2025-06-04 23:39:09,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550934415168)>', '<ExcThread(monitor, started 140549986187008)>']
[2025-06-05 03:06:09] 2025-06-04 23:39:09,951 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:06:09] 2025-06-04 23:39:09,951 | INFO     | [monitor] control thread has ended
[2025-06-05 03:06:09] 2025-06-04 23:39:14,849 | INFO     | all workflow threads have been joined
[2025-06-05 03:06:09] 2025-06-04 23:39:14,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:06:09] 2025-06-04 23:39:14,849 | INFO     | traces error code: 0
[2025-06-05 03:06:09] 2025-06-04 23:39:14,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:06:09] 2025-06-04 23:39:15,143 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:06:09] 2025-06-04 23:39:15,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:06:09] 2025-06-04 23:39:15,300 [wrapper] pilotpid: 13342
[2025-06-05 03:06:09] 2025-06-04 23:39:15,367 [wrapper] Pilot exit status: 0
[2025-06-05 03:06:09] 2025-06-04 23:39:15,671 [wrapper] pandaids: 6678756329
[2025-06-05 03:06:09] 2025-06-04 23:39:16,362 [wrapper] cleanup supervisor_pilot 30330 13343
[2025-06-05 03:06:09] 2025-06-04 23:39:16,404 [wrapper] Test setup, not cleaning
[2025-06-05 03:06:09] 2025-06-04 23:39:16,479 [wrapper] apfmon messages muted
[2025-06-05 03:06:09] 2025-06-04 23:39:16,544 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:06:09] 2025-06-04 23:39:16,575 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:06:09]  *** Error codes and diagnostics ***
[2025-06-05 03:06:09]     "exeErrorCode": 0,
[2025-06-05 03:06:09]     "exeErrorDiag": "",
[2025-06-05 03:06:09]     "pilotErrorCode": 0,
[2025-06-05 03:06:09]     "pilotErrorDiag": "",
[2025-06-05 03:06:09]  *** Listing of results directory ***
[2025-06-05 03:06:09] total 393864
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc    495897 Jun  4 09:34 pilot3.tar.gz
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc      5111 Jun  4 09:51 queuedata.json
[2025-06-05 03:06:09] -rwx------. 1 boinc boinc     37140 Jun  4 09:53 runpilot2-wrapper.sh
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:06:09] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:05 run_atlas
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:05 job.xml
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc      6392 Jun  4 22:05 init_data.xml
[2025-06-05 03:06:09] -rw-r--r--. 2 boinc boinc 215526953 Jun  4 22:05 EVNT.45006593._000995.pool.root.1
[2025-06-05 03:06:09] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:05 start_atlas.sh
[2025-06-05 03:06:09] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:05 shared
[2025-06-05 03:06:09] -rw-r--r--. 2 boinc boinc    508888 Jun  4 22:05 input.tar.gz
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:05 boinc_lockfile
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc      2524 Jun  4 22:05 pandaJob.out
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc    991007 Jun  4 22:05 agis_schedconf.cvmfs.json
[2025-06-05 03:06:09] drwx------. 4 boinc boinc      4096 Jun  4 22:05 pilot3
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc 180979767 Jun  5 01:36 HITS.45006595._055550.pool.root.1
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc       531 Jun  5 01:36 boinc_task_state.xml
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc      1019 Jun  5 01:37 memory_monitor_summary.json
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc   1598969 Jun  5 01:37 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc    371113 Jun  5 01:37 log.45006595._055550.job.log.tgz.1
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc        95 Jun  5 01:38 pilot_heartbeat.json
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc      7685 Jun  5 01:38 heartbeat.json
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc      4416 Jun  5 01:39 pilotlog.txt
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc   1124320 Jun  5 01:39 log.45006595._055550.job.log.1
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc       357 Jun  5 01:39 output.list
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc       620 Jun  5 01:39 runtime_log
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc   1515520 Jun  5 01:39 result.tar.gz
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc      8659 Jun  5 01:39 runtime_log.err
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc       657 Jun  5 01:39 GVNKDm86xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZlnKDmuFAVnm.diag
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc      8192 Jun  5 03:06 boinc_mmap_file
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc        28 Jun  5 03:06 wrapper_checkpoint.txt
[2025-06-05 03:06:09] -rw-r--r--. 1 boinc boinc     20568 Jun  5 03:06 stderr.txt
[2025-06-05 03:06:09] HITS file was successfully produced:
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc 180979767 Jun  5 01:36 shared/HITS.pool.root.1
[2025-06-05 03:06:09]  *** Contents of shared directory: ***
[2025-06-05 03:06:09] total 389212
[2025-06-05 03:06:09] -rw-r--r--. 2 boinc boinc 215526953 Jun  4 22:05 ATLAS.root_0
[2025-06-05 03:06:09] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:05 start_atlas.sh
[2025-06-05 03:06:09] -rw-r--r--. 2 boinc boinc    508888 Jun  4 22:05 input.tar.gz
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc 180979767 Jun  5 01:36 HITS.pool.root.1
[2025-06-05 03:06:09] -rw-------. 1 boinc boinc   1515520 Jun  5 01:39 result.tar.gz
03:06:11 (9659): run_atlas exited; CPU time 48093.801520
03:06:11 (9659): called boinc_finish(0)

</stderr_txt>
]]>

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