Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:55:51 (1235997): wrapper (7.7.26015): starting
17:55:51 (1235997): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 17:55:51] Arguments: --nthreads 12
[2025-06-05 17:55:51] Threads: 12
[2025-06-05 17:55:51] Checking for CVMFS
[2025-06-05 17:55:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 17:55:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 17:55:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 17:55:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 17:55:52] 2.12.7.0 3695 1236 53084 146827 3 187 3690541 4096000 2727 130560 0 3413343 99.997 315921 138 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 17:55:52] CVMFS is ok
[2025-06-05 17:55:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 17:55:52] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 17:55:52] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 17:55:52] Further information can be found at the LHC@home message board.
[2025-06-05 17:55:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 17:55:52] Checking for apptainer binary...
[2025-06-05 17:55:52] apptainer is not installed, using version from CVMFS
[2025-06-05 17:55:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 17:55:52] dualxeon2
[2025-06-05 17:55:52] apptainer works
[2025-06-05 17:55:52] Set ATHENA_PROC_NUMBER=12
[2025-06-05 17:55:52] Set ATHENA_CORE_NUMBER=12
[2025-06-05 17:55:52] Starting ATLAS job with PandaID=6678363427
[2025-06-05 17:55:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 19:39:24]  *** The last 200 lines of the pilot log: ***
[2025-06-05 19:39:24] 2025-06-05 19:39:06,084 | INFO     | mean y: 2577936.782178218
[2025-06-05 19:39:24] 2025-06-05 19:39:06,084 | INFO     | -- intersect: -131737190427.3512
[2025-06-05 19:39:24] 2025-06-05 19:39:06,084 | INFO     | intersect: -131737190427.3512
[2025-06-05 19:39:24] 2025-06-05 19:39:06,085 | INFO     | chi2: 1.6781922063351193
[2025-06-05 19:39:24] 2025-06-05 19:39:06,085 | INFO     | sum of square deviations: 274312120.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,086 | INFO     | sum of deviations: 22687942615.5
[2025-06-05 19:39:24] 2025-06-05 19:39:06,086 | INFO     | mean x: 1749149083.5
[2025-06-05 19:39:24] 2025-06-05 19:39:06,086 | INFO     | mean y: 2573299.1979166665
[2025-06-05 19:39:24] 2025-06-05 19:39:06,086 | INFO     | -- intersect: -144666914991.74023
[2025-06-05 19:39:24] 2025-06-05 19:39:06,086 | INFO     | intersect: -144666914991.74023
[2025-06-05 19:39:24] 2025-06-05 19:39:06,086 | INFO     | chi2: 1.6773320575120103
[2025-06-05 19:39:24] 2025-06-05 19:39:06,087 | INFO     | current chi2=1.6773320575120103 (change=0.0512544880057241 %)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,087 | INFO     | right removable region: 95
[2025-06-05 19:39:24] 2025-06-05 19:39:06,087 | INFO     | sum of square deviations: 274312120.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,088 | INFO     | sum of deviations: 5151088270.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,088 | INFO     | mean x: 1749149388.5
[2025-06-05 19:39:24] 2025-06-05 19:39:06,088 | INFO     | mean y: 2640780.3125
[2025-06-05 19:39:24] 2025-06-05 19:39:06,088 | INFO     | -- intersect: -32843238933.56971
[2025-06-05 19:39:24] 2025-06-05 19:39:06,088 | INFO     | intersect: -32843238933.56971
[2025-06-05 19:39:24] 2025-06-05 19:39:06,088 | INFO     | chi2: 0.04524993021007426
[2025-06-05 19:39:24] 2025-06-05 19:39:06,089 | INFO     | current chi2=0.04524993021007426 (change=97.30365031852386 %)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,089 | INFO     | sum of square deviations: 233641590.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,089 | INFO     | sum of deviations: 2159923563.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,090 | INFO     | mean x: 1749149541.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,090 | INFO     | mean y: 2651767.4065934066
[2025-06-05 19:39:24] 2025-06-05 19:39:06,090 | INFO     | -- intersect: -16167539972.927542
[2025-06-05 19:39:24] 2025-06-05 19:39:06,090 | INFO     | intersect: -16167539972.927542
[2025-06-05 19:39:24] 2025-06-05 19:39:06,090 | INFO     | chi2: 0.0008047298479391958
[2025-06-05 19:39:24] 2025-06-05 19:39:06,090 | INFO     | current chi2=0.0008047298479391958 (change=98.22158875338987 %)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,091 | INFO     | sum of square deviations: 197203697.5
[2025-06-05 19:39:24] 2025-06-05 19:39:06,091 | INFO     | sum of deviations: 1545898417.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,091 | INFO     | mean x: 1749149693.5
[2025-06-05 19:39:24] 2025-06-05 19:39:06,091 | INFO     | mean y: 2654321.976744186
[2025-06-05 19:39:24] 2025-06-05 19:39:06,092 | INFO     | -- intersect: -13709095389.398142
[2025-06-05 19:39:24] 2025-06-05 19:39:06,092 | INFO     | intersect: -13709095389.398142
[2025-06-05 19:39:24] 2025-06-05 19:39:06,092 | INFO     | chi2: 0.0003890189268645062
[2025-06-05 19:39:24] 2025-06-05 19:39:06,092 | INFO     | current chi2=0.0003890189268645062 (change=51.65844440084694 %)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,092 | INFO     | sum of square deviations: 164765880.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,093 | INFO     | sum of deviations: 1260396884.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,093 | INFO     | mean x: 1749149846.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,093 | INFO     | mean y: 2655656.4938271604
[2025-06-05 19:39:24] 2025-06-05 19:39:06,093 | INFO     | -- intersect: -13377681434.823137
[2025-06-05 19:39:24] 2025-06-05 19:39:06,093 | INFO     | intersect: -13377681434.823137
[2025-06-05 19:39:24] 2025-06-05 19:39:06,094 | INFO     | chi2: 0.00037135039720863534
[2025-06-05 19:39:24] 2025-06-05 19:39:06,094 | INFO     | current chi2=0.00037135039720863534 (change=4.541817489004778 %)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,094 | INFO     | left removable region: 40
[2025-06-05 19:39:24] 2025-06-05 19:39:06,094 | INFO     | sum of square deviations: 51573060.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,094 | INFO     | sum of deviations: 281173644.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,094 | INFO     | mean x: 1749150273.0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,095 | INFO     | mean y: 2660992.654545455
[2025-06-05 19:39:24] 2025-06-05 19:39:06,095 | INFO     | -- intersect: -9533615430.792208
[2025-06-05 19:39:24] 2025-06-05 19:39:06,095 | INFO     | intersect: -9533615430.792208
[2025-06-05 19:39:24] 2025-06-05 19:39:06,095 | INFO     | chi2: 0.0002120060690112924
[2025-06-05 19:39:24] 2025-06-05 19:39:06,095 | INFO     | -- intersect: -9533615430.792208
[2025-06-05 19:39:24] 2025-06-05 19:39:06,095 | INFO     | current memory leak: 5.45 B/s (using 55 data points, chi2=0.00)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | ..............................
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | . Timing measurements:
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | . get job = 0 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | . initial setup = 1 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | . payload setup = 6 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | . stage-in = 0 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,096 | INFO     | . payload execution = 6154 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,097 | INFO     | . stage-out = 0 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,097 | INFO     | . log creation = 0 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,097 | INFO     | ..............................
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | 
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | job summary report
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | --------------------------------------------------
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | PanDA job id: 6678363427
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | task id: 45006595
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | errors: (none)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,207 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | pilot state: finished 
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | transexitcode: 0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | exeerrorcode: 0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | exeerrordiag: 
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | exitcode: 0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | exitmsg: OK
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | cpuconsumptiontime: 47519 s
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | nevents: 400
[2025-06-05 19:39:24] 2025-06-05 19:39:06,208 | INFO     | neventsw: 0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | pid: 1246440
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | pgrp: 1246440
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | corecount: 12
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | event service: False
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | sizes: {0: 2397195, 1: 2397394, 4: 2397600, 12: 2397628, 6164: 2424339, 6166: 2433326, 6167: 2433510, 6170: 2433680}
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | --------------------------------------------------
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | 
[2025-06-05 19:39:24] 2025-06-05 19:39:06,209 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/0
[2025-06-05 19:39:24] 2025-06-05 19:39:06,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 19:39:24] 2025-06-05 19:39:06,230 | INFO     | job 6678363427 has completed (purged errors)
[2025-06-05 19:39:24] 2025-06-05 19:39:06,230 | INFO     | overall cleanup function is called
[2025-06-05 19:39:24] 2025-06-05 19:39:07,239 | INFO     | --- collectZombieJob: --- 10, [1246440]
[2025-06-05 19:39:24] 2025-06-05 19:39:07,239 | INFO     | zombie collector waiting for pid 1246440
[2025-06-05 19:39:24] 2025-06-05 19:39:07,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 19:39:24] 2025-06-05 19:39:07,239 | INFO     | collected zombie processes
[2025-06-05 19:39:24] 2025-06-05 19:39:07,239 | INFO     | will attempt to kill all subprocesses of pid=1246440
[2025-06-05 19:39:24] 2025-06-05 19:39:07,415 | INFO     | process IDs to be killed: [1246440] (in reverse order)
[2025-06-05 19:39:24] 2025-06-05 19:39:07,470 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 19:39:24] 2025-06-05 19:39:07,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 19:39:24] 2025-06-05 19:39:07,474 | INFO     | did not find any defunct processes belonging to 1246440
[2025-06-05 19:39:24] 2025-06-05 19:39:07,477 | INFO     | did not find any defunct processes belonging to 1246440
[2025-06-05 19:39:24] 2025-06-05 19:39:07,477 | INFO     | ready for new job
[2025-06-05 19:39:24] 2025-06-05 19:39:07,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 19:39:24] 2025-06-05 19:39:07,479 | INFO     | **************************************
[2025-06-05 19:39:24] 2025-06-05 19:39:07,479 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 19:39:24] 2025-06-05 19:39:07,479 | INFO     | **************************************
[2025-06-05 19:39:24] 2025-06-05 19:39:07,479 | INFO     | 
[2025-06-05 19:39:24] 2025-06-05 19:39:07,481 | INFO     | architecture information:
[2025-06-05 19:39:24] 2025-06-05 19:39:07,482 | INFO     | executing command: cat /etc/os-release
[2025-06-05 19:39:24] 2025-06-05 19:39:07,493 | INFO     | cat /etc/os-release:
[2025-06-05 19:39:24] NAME="CentOS Linux"
[2025-06-05 19:39:24] VERSION="7 (Core)"
[2025-06-05 19:39:24] ID="centos"
[2025-06-05 19:39:24] ID_LIKE="rhel fedora"
[2025-06-05 19:39:24] VERSION_ID="7"
[2025-06-05 19:39:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 19:39:24] ANSI_COLOR="0;31"
[2025-06-05 19:39:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 19:39:24] HOME_URL="https://www.centos.org/"
[2025-06-05 19:39:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 19:39:24] 
[2025-06-05 19:39:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 19:39:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 19:39:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 19:39:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 19:39:24] 
[2025-06-05 19:39:24] 2025-06-05 19:39:07,494 | INFO     | **************************************
[2025-06-05 19:39:24] 2025-06-05 19:39:07,996 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/0
[2025-06-05 19:39:24] 2025-06-05 19:39:08,009 | INFO     | sufficient remaining disk space (89010470912 B)
[2025-06-05 19:39:24] 2025-06-05 19:39:08,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 19:39:24] 2025-06-05 19:39:08,010 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 19:39:24] 2025-06-05 19:39:08,010 | INFO     | update_server=False
[2025-06-05 19:39:24] 2025-06-05 19:39:08,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 19:39:24] 2025-06-05 19:39:08,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:39:24] 2025-06-05 19:39:08,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 19:39:24] 2025-06-05 19:39:08,063 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 19:39:24] 2025-06-05 19:39:08,063 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 19:39:24] 2025-06-05 19:39:08,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:39:24] 2025-06-05 19:39:08,064 | INFO     | will abort loop
[2025-06-05 19:39:24] 2025-06-05 19:39:08,539 | INFO     | all data control threads have been joined
[2025-06-05 19:39:24] 2025-06-05 19:39:08,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 19:39:24] 2025-06-05 19:39:08,801 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 19:39:24] 2025-06-05 19:39:08,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 19:39:24] 2025-06-05 19:39:08,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 19:39:24] 2025-06-05 19:39:09,011 | INFO     | [job] retrieve thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,011 | INFO     | [job] queue monitor thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,025 | INFO     | [payload] validate_post thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,069 | INFO     | [job] job monitor thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,280 | INFO     | all payload control threads have been joined
[2025-06-05 19:39:24] 2025-06-05 19:39:09,503 | INFO     | [job] validate thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,544 | INFO     | [data] control thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,575 | INFO     | all job control threads have been joined
[2025-06-05 19:39:24] 2025-06-05 19:39:09,594 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,596 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:09,918 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:10,016 | INFO     | [data] copytool_out thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:10,098 | INFO     | [data] copytool_in thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:10,169 | INFO     | [payload] failed_post thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:10,286 | INFO     | [payload] control thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:10,580 | INFO     | [job] control thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:12,612 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:18,067 | INFO     | job.realtimelogging is not enabled
[2025-06-05 19:39:24] 2025-06-05 19:39:19,071 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 19:39:24] 2025-06-05 19:39:19,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135031458330432)>', '<ExcThread(monitor, started 135030743492352)>']
[2025-06-05 19:39:24] 2025-06-05 19:39:19,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 19:39:24] 2025-06-05 19:39:19,841 | INFO     | [monitor] control thread has ended
[2025-06-05 19:39:24] 2025-06-05 19:39:24,757 | INFO     | all workflow threads have been joined
[2025-06-05 19:39:24] 2025-06-05 19:39:24,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 19:39:24] 2025-06-05 19:39:24,758 | INFO     | traces error code: 0
[2025-06-05 19:39:24] 2025-06-05 19:39:24,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 19:39:24] 2025-06-05 19:39:24,861 [wrapper] ==== pilot stdout END ====
[2025-06-05 19:39:24] 2025-06-05 19:39:24,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 19:39:24] 2025-06-05 19:39:24,866 [wrapper] pilotpid: 1239744
[2025-06-05 19:39:24] 2025-06-05 19:39:24,869 [wrapper] Pilot exit status: 0
[2025-06-05 19:39:24] 2025-06-05 19:39:24,879 [wrapper] pandaids: 6678363427
[2025-06-05 19:39:24] 2025-06-05 19:39:24,913 [wrapper] cleanup supervisor_pilot 1314902 1239745
[2025-06-05 19:39:24] 2025-06-05 19:39:24,916 [wrapper] Test setup, not cleaning
[2025-06-05 19:39:24] 2025-06-05 19:39:24,920 [wrapper] apfmon messages muted
[2025-06-05 19:39:24] 2025-06-05 19:39:24,922 [wrapper] ==== wrapper stdout END ====
[2025-06-05 19:39:24] 2025-06-05 19:39:24,925 [wrapper] ==== wrapper stderr END ====
[2025-06-05 19:39:24]  *** Error codes and diagnostics ***
[2025-06-05 19:39:24]     "exeErrorCode": 0,
[2025-06-05 19:39:24]     "exeErrorDiag": "",
[2025-06-05 19:39:24]     "pilotErrorCode": 0,
[2025-06-05 19:39:24]     "pilotErrorDiag": "",
[2025-06-05 19:39:24]  *** Listing of results directory ***
[2025-06-05 19:39:24] total 391928
[2025-06-05 19:39:24] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-05 19:39:24] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:22 queuedata.json
[2025-06-05 19:39:24] -rwx------ 1 boinc boinc     37140 Jun  4 05:24 runpilot2-wrapper.sh
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc       100 Jun  5 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 19:39:24] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 17:55 run_atlas
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc       105 Jun  5 17:55 job.xml
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc      6594 Jun  5 17:55 init_data.xml
[2025-06-05 19:39:24] -rw-r--r-- 2 boinc boinc 217880206 Jun  5 17:55 EVNT.45006593._002140.pool.root.1
[2025-06-05 19:39:24] drwxrwx--x 2 boinc boinc      4096 Jun  5 17:55 shared
[2025-06-05 19:39:24] -rw-r--r-- 2 boinc boinc    508882 Jun  5 17:55 input.tar.gz
[2025-06-05 19:39:24] -rw-r--r-- 2 boinc boinc     15093 Jun  5 17:55 start_atlas.sh
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc         0 Jun  5 17:55 boinc_lockfile
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc      2526 Jun  5 17:55 pandaJob.out
[2025-06-05 19:39:24] -rw------- 1 boinc boinc    983229 Jun  5 17:55 agis_schedconf.cvmfs.json
[2025-06-05 19:39:24] -rw------- 1 boinc boinc   1598969 Jun  5 17:55 agis_ddmendpoints.agis.ALL.json
[2025-06-05 19:39:24] drwx------ 4 boinc boinc      4096 Jun  5 17:56 pilot3
[2025-06-05 19:39:24] -rw------- 1 boinc boinc 177648531 Jun  5 19:38 HITS.45006595._053467.pool.root.1
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc       530 Jun  5 19:38 boinc_task_state.xml
[2025-06-05 19:39:24] -rw------- 1 boinc boinc      1022 Jun  5 19:38 memory_monitor_summary.json
[2025-06-05 19:39:24] -rw------- 1 boinc boinc    375257 Jun  5 19:39 log.45006595._053467.job.log.tgz.1
[2025-06-05 19:39:24] -rw------- 1 boinc boinc      7663 Jun  5 19:39 heartbeat.json
[2025-06-05 19:39:24] -rw------- 1 boinc boinc        95 Jun  5 19:39 pilot_heartbeat.json
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 19:39 boinc_mmap_file
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc        27 Jun  5 19:39 wrapper_checkpoint.txt
[2025-06-05 19:39:24] -rw------- 1 boinc boinc      4634 Jun  5 19:39 pilotlog.txt
[2025-06-05 19:39:24] -rw------- 1 boinc boinc    612719 Jun  5 19:39 log.45006595._053467.job.log.1
[2025-06-05 19:39:24] -rw------- 1 boinc boinc       357 Jun  5 19:39 output.list
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc       620 Jun  5 19:39 runtime_log
[2025-06-05 19:39:24] -rw------- 1 boinc boinc   1003520 Jun  5 19:39 result.tar.gz
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc      8968 Jun  5 19:39 runtime_log.err
[2025-06-05 19:39:24] -rw------- 1 boinc boinc       653 Jun  5 19:39 qP9MDmmmvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmjmaKDmpO8pJn.diag
[2025-06-05 19:39:24] -rw-rw-r-- 1 boinc boinc     20896 Jun  5 19:39 stderr.txt
[2025-06-05 19:39:24] HITS file was successfully produced:
[2025-06-05 19:39:24] -rw------- 1 boinc boinc 177648531 Jun  5 19:38 shared/HITS.pool.root.1
[2025-06-05 19:39:24]  *** Contents of shared directory: ***
[2025-06-05 19:39:25] total 387768
[2025-06-05 19:39:25] -rw-r--r-- 2 boinc boinc 217880206 Jun  5 17:55 ATLAS.root_0
[2025-06-05 19:39:25] -rw-r--r-- 2 boinc boinc    508882 Jun  5 17:55 input.tar.gz
[2025-06-05 19:39:25] -rw-r--r-- 2 boinc boinc     15093 Jun  5 17:55 start_atlas.sh
[2025-06-05 19:39:25] -rw------- 1 boinc boinc 177648531 Jun  5 19:38 HITS.pool.root.1
[2025-06-05 19:39:25] -rw------- 1 boinc boinc   1003520 Jun  5 19:39 result.tar.gz
19:39:26 (1235997): run_atlas exited; CPU time 47574.227232
19:39:26 (1235997): called boinc_finish(0)

</stderr_txt>
]]>

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