Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:05:53 (3499320): wrapper (7.7.26015): starting
06:05:53 (3499320): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 06:05:53] Arguments: --nthreads 10
[2025-06-04 06:05:53] Threads: 10
[2025-06-04 06:05:53] Checking for CVMFS
[2025-06-04 06:05:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:05:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:05:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:05:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:05:54] 2.12.6.0 4596 1196 107432 146775 2 263 28314284 32935937 6161 16776704 0 7810576 99.956 1104178 41245 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 06:05:54] CVMFS is ok
[2025-06-04 06:05:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:05:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 06:05:54] Further information can be found at the LHC@home message board.
[2025-06-04 06:05:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:05:54] Checking for apptainer binary...
[2025-06-04 06:05:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:05:54] Running /usr/bin/apptainer --version
[2025-06-04 06:05:54] apptainer version 1.4.1-1.el9
[2025-06-04 06:05:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:05:54] c-8-1.aglt2.org
[2025-06-04 06:05:54] apptainer works
[2025-06-04 06:05:54] Set ATHENA_PROC_NUMBER=10
[2025-06-04 06:05:54] Set ATHENA_CORE_NUMBER=10
[2025-06-04 06:05:54] Starting ATLAS job with PandaID=6678313920
[2025-06-04 06:05:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:06:18]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:06:18]  guid=fbdf32c7-3cf7-47e1-a5c2-fb135268dd88
[2025-06-04 07:06:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 07:06:18]  is_altstaged=None
[2025-06-04 07:06:18]  is_tar=False
[2025-06-04 07:06:18]  lfn=log.45006595._052805.job.log.tgz.1
[2025-06-04 07:06:18]  mtime=0
[2025-06-04 07:06:18]  protocol_id=None
[2025-06-04 07:06:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 07:06:18]  replicas=None
[2025-06-04 07:06:18]  scope=mc23_13p6TeV
[2025-06-04 07:06:18]  status=None
[2025-06-04 07:06:18]  status_code=0
[2025-06-04 07:06:18]  storage_token=
[2025-06-04 07:06:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678313920/log.45006595._052805.job.log.tgz.1
[2025-06-04 07:06:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/20/log.45006595._052805.job.log.tgz.1
[2025-06-04 07:06:18]  workdir=None
[2025-06-04 07:06:18] ]
[2025-06-04 07:06:18] 2025-06-04 11:05:54,835 | INFO     | transferring file log.45006595._052805.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678313920/log.45006595._052805.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 07:06:18] 2025-06-04 11:05:54,835 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678313920/log.45006595._052805.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._052805.job
[2025-06-04 07:06:18] 2025-06-04 11:05:54,846 | INFO     | adding to output.list: log.45006595._052805.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/20/log.45006595._052805.job.log.tg
[2025-06-04 07:06:18] 2025-06-04 11:05:54,847 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 07:06:18] 2025-06-04 11:05:54,847 | INFO     | summary of transferred files:
[2025-06-04 07:06:18] 2025-06-04 11:05:54,847 | INFO     |  -- lfn=log.45006595._052805.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 07:06:18] 2025-06-04 11:05:54,847 | INFO     | stage-out finished correctly
[2025-06-04 07:06:18] 2025-06-04 11:05:56,589 | INFO     | monitor loop #269: job 0:6678313920 is in state 'finished'
[2025-06-04 07:06:18] 2025-06-04 11:05:56,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:06:18] 2025-06-04 11:05:57,321 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 07:06:18] 2025-06-04 11:05:57,378 | INFO     | job 6678313920 has state=finished
[2025-06-04 07:06:18] 2025-06-04 11:05:57,379 | INFO     | preparing for final server update for job 6678313920 in state='finished'
[2025-06-04 07:06:18] 2025-06-04 11:05:57,428 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 07:06:18] 2025-06-04 11:05:57,429 | INFO     | this job has now completed (state=finished)
[2025-06-04 07:06:18] 2025-06-04 11:05:57,429 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 07:06:18] 2025-06-04 11:05:57,429 | INFO     | log transfer has been attempted: DONE
[2025-06-04 07:06:18] 2025-06-04 11:05:57,429 | INFO     | job 6678313920 has finished - writing final server update
[2025-06-04 07:06:18] 2025-06-04 11:05:57,429 | INFO     | total number of processed events: 400 (read)
[2025-06-04 07:06:18] 2025-06-04 11:05:57,442 | INFO     | executing command: lscpu
[2025-06-04 07:06:18] 2025-06-04 11:05:57,479 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 07:06:18] 2025-06-04 11:05:59,026 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-06-04 07:06:18] 2025-06-04 11:05:59,092 | INFO     | monitor loop #270: job 0:6678313920 is in state 'finished'
[2025-06-04 07:06:18] 2025-06-04 11:05:59,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:06:18] 2025-06-04 11:06:00,095 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 07:06:18] 2025-06-04 11:06:00,095 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678313920/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:06:18] 2025-06-04 11:06:00,096 | INFO     | extracted standard info from prmon json
[2025-06-04 07:06:18] 2025-06-04 11:06:00,096 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:06:18] 2025-06-04 11:06:00,096 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:06:18] 2025-06-04 11:06:00,096 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:06:18] 2025-06-04 11:06:00,096 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:06:18] 2025-06-04 11:06:00,097 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:06:18] 2025-06-04 11:06:00,097 | INFO     | sum of square deviations: 43584073.0
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | sum of deviations: 5427906239.5
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | mean x: 1749033443.5
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | mean y: 2258757.326923077
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | -- intersect: -217820190766.0992
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | intersect: -217820190766.0992
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | chi2: 0.3773386279017818
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | -- intersect: -217820190766.0992
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | current memory leak: 124.54 B/s (using 52 data points, chi2=0.38)
[2025-06-04 07:06:18] 2025-06-04 11:06:00,098 | INFO     | ..............................
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . Timing measurements:
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . get job = 0 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . initial setup = 2 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . payload setup = 4 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . stage-in = 0 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . payload execution = 3570 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . stage-out = 0 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | . log creation = 0 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,099 | INFO     | ..............................
[2025-06-04 07:06:18] 2025-06-04 11:06:00,424 | INFO     | 
[2025-06-04 07:06:18] 2025-06-04 11:06:00,424 | INFO     | job summary report
[2025-06-04 07:06:18] 2025-06-04 11:06:00,424 | INFO     | --------------------------------------------------
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | PanDA job id: 6678313920
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | task id: 45006595
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | errors: (none)
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | pilot state: finished 
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | transexitcode: 0
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | exeerrorcode: 0
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | exeerrordiag: 
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | exitcode: 0
[2025-06-04 07:06:18] 2025-06-04 11:06:00,425 | INFO     | exitmsg: OK
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | cpuconsumptiontime: 29335 s
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | nevents: 400
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | neventsw: 0
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | pid: 3509648
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | pgrp: 3509648
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | corecount: 10
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | event service: False
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | sizes: {0: 2405182, 3: 2405388, 11: 2405416, 3578: 2431061, 3579: 2440002, 3581: 2440058, 3584: 2440356}
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | --------------------------------------------------
[2025-06-04 07:06:18] 2025-06-04 11:06:00,426 | INFO     | 
[2025-06-04 07:06:18] 2025-06-04 11:06:00,427 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | job 6678313920 has completed (purged errors)
[2025-06-04 07:06:18] 2025-06-04 11:06:00,442 | INFO     | overall cleanup function is called
[2025-06-04 07:06:18] 2025-06-04 11:06:01,445 | INFO     | --- collectZombieJob: --- 10, [3509648]
[2025-06-04 07:06:18] 2025-06-04 11:06:01,445 | INFO     | zombie collector waiting for pid 3509648
[2025-06-04 07:06:18] 2025-06-04 11:06:01,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:06:18] 2025-06-04 11:06:01,445 | INFO     | collected zombie processes
[2025-06-04 07:06:18] 2025-06-04 11:06:01,445 | INFO     | will attempt to kill all subprocesses of pid=3509648
[2025-06-04 07:06:18] 2025-06-04 11:06:01,625 | INFO     | process IDs to be killed: [3509648] (in reverse order)
[2025-06-04 07:06:18] 2025-06-04 11:06:01,679 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:06:18] 2025-06-04 11:06:01,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:06:18] 2025-06-04 11:06:01,686 | INFO     | did not find any defunct processes belonging to 3509648
[2025-06-04 07:06:18] 2025-06-04 11:06:01,692 | INFO     | did not find any defunct processes belonging to 3509648
[2025-06-04 07:06:18] 2025-06-04 11:06:01,692 | INFO     | ready for new job
[2025-06-04 07:06:18] 2025-06-04 11:06:01,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:06:18] 2025-06-04 11:06:01,693 | INFO     | **************************************
[2025-06-04 07:06:18] 2025-06-04 11:06:01,693 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:06:18] 2025-06-04 11:06:01,693 | INFO     | **************************************
[2025-06-04 07:06:18] 2025-06-04 11:06:01,693 | INFO     | 
[2025-06-04 07:06:18] 2025-06-04 11:06:01,706 | INFO     | architecture information:
[2025-06-04 07:06:18] 2025-06-04 11:06:01,706 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:06:18] 2025-06-04 11:06:01,716 | INFO     | cat /etc/os-release:
[2025-06-04 07:06:18] NAME="CentOS Linux"
[2025-06-04 07:06:18] VERSION="7 (Core)"
[2025-06-04 07:06:18] ID="centos"
[2025-06-04 07:06:18] ID_LIKE="rhel fedora"
[2025-06-04 07:06:18] VERSION_ID="7"
[2025-06-04 07:06:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:06:18] ANSI_COLOR="0;31"
[2025-06-04 07:06:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:06:18] HOME_URL="https://www.centos.org/"
[2025-06-04 07:06:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:06:18] 
[2025-06-04 07:06:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:06:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:06:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:06:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:06:18] 
[2025-06-04 07:06:18] 2025-06-04 11:06:01,716 | INFO     | **************************************
[2025-06-04 07:06:18] 2025-06-04 11:06:02,219 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 07:06:18] 2025-06-04 11:06:02,231 | INFO     | sufficient remaining disk space (76567019520 B)
[2025-06-04 07:06:18] 2025-06-04 11:06:02,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:06:18] 2025-06-04 11:06:02,231 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:06:18] 2025-06-04 11:06:02,232 | INFO     | update_server=False
[2025-06-04 07:06:18] 2025-06-04 11:06:02,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:06:18] 2025-06-04 11:06:02,391 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:06:18] 2025-06-04 11:06:02,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:06:18] 2025-06-04 11:06:02,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:06:18] 2025-06-04 11:06:02,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:06:18] 2025-06-04 11:06:02,600 | INFO     | aborting loop
[2025-06-04 07:06:18] 2025-06-04 11:06:02,916 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:06:18] 2025-06-04 11:06:02,940 | INFO     | all payload control threads have been joined
[2025-06-04 07:06:18] 2025-06-04 11:06:03,228 | INFO     | all data control threads have been joined
[2025-06-04 07:06:18] 2025-06-04 11:06:03,237 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:03,317 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:03,336 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:03,345 | INFO     | [job] validate thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:03,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:06:18] 2025-06-04 11:06:03,474 | INFO     | all job control threads have been joined
[2025-06-04 07:06:18] 2025-06-04 11:06:03,605 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:03,861 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:03,945 | INFO     | [payload] control thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:04,233 | INFO     | [data] control thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:04,338 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:04,480 | INFO     | [job] control thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:04,662 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:04,686 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:04,918 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:05,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:06:18] 2025-06-04 11:06:06,175 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:07,390 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:12,400 | INFO     | job.realtimelogging is not enabled
[2025-06-04 07:06:18] 2025-06-04 11:06:13,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:06:18] 2025-06-04 11:06:13,747 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139982789334848)>', '<ExcThread(monitor, started 139982136125184)>']
[2025-06-04 07:06:18] 2025-06-04 11:06:14,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:06:18] 2025-06-04 11:06:14,448 | INFO     | [monitor] control thread has ended
[2025-06-04 07:06:18] 2025-06-04 11:06:18,764 | INFO     | all workflow threads have been joined
[2025-06-04 07:06:18] 2025-06-04 11:06:18,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:06:18] 2025-06-04 11:06:18,764 | INFO     | traces error code: 0
[2025-06-04 07:06:18] 2025-06-04 11:06:18,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:06:18] 2025-06-04 11:06:18,853 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:06:18] 2025-06-04 11:06:18,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:06:18] 2025-06-04 11:06:18,856 [wrapper] pilotpid: 3503061
[2025-06-04 07:06:18] 2025-06-04 11:06:18,858 [wrapper] Pilot exit status: 0
[2025-06-04 07:06:18] 2025-06-04 11:06:18,865 [wrapper] pandaids: 6678313920
[2025-06-04 07:06:18] 2025-06-04 11:06:18,903 [wrapper] cleanup supervisor_pilot 3631293 3503062
[2025-06-04 07:06:18] 2025-06-04 11:06:18,905 [wrapper] Test setup, not cleaning
[2025-06-04 07:06:18] 2025-06-04 11:06:18,906 [wrapper] apfmon messages muted
[2025-06-04 07:06:18] 2025-06-04 11:06:18,908 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:06:18] 2025-06-04 11:06:18,910 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:06:18]  *** Error codes and diagnostics ***
[2025-06-04 07:06:18]     "exeErrorCode": 0,
[2025-06-04 07:06:18]     "exeErrorDiag": "",
[2025-06-04 07:06:18]     "pilotErrorCode": 0,
[2025-06-04 07:06:18]     "pilotErrorDiag": "",
[2025-06-04 07:06:18]  *** Listing of results directory ***
[2025-06-04 07:06:18] total 387968
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:58 pilot3.tar.gz
[2025-06-04 07:06:18] -rwx------. 1 boincer umatlas     37140 Jun  4 01:01 runpilot2-wrapper.sh
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 01:01 queuedata.json
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas       100 Jun  4 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:06:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 06:05 run_atlas
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas       105 Jun  4 06:05 job.xml
[2025-06-04 07:06:18] -rw-r--r--. 2 boincer umatlas 214319530 Jun  4 06:05 EVNT.45006593._002115.pool.root.1
[2025-06-04 07:06:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:05 start_atlas.sh
[2025-06-04 07:06:18] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 06:05 shared
[2025-06-04 07:06:18] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 06:05 input.tar.gz
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas         0 Jun  4 06:05 boinc_lockfile
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 06:05 pandaJob.out
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas    986766 Jun  4 06:05 agis_schedconf.cvmfs.json
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas   1603667 Jun  4 06:06 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:06:18] drwx------. 4 boincer umatlas      4096 Jun  4 06:06 pilot3
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas      6657 Jun  4 07:04 init_data.xml
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas        95 Jun  4 07:05 pilot_heartbeat.json
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas       529 Jun  4 07:05 boinc_task_state.xml
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas 177765878 Jun  4 07:05 HITS.45006595._052805.pool.root.1
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas      1030 Jun  4 07:05 memory_monitor_summary.json
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas        27 Jun  4 07:05 wrapper_checkpoint.txt
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 07:05 boinc_mmap_file
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas    312470 Jun  4 07:05 log.45006595._052805.job.log.tgz.1
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas      7701 Jun  4 07:06 heartbeat.json
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas      4425 Jun  4 07:06 pilotlog.txt
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas    368906 Jun  4 07:06 log.45006595._052805.job.log.1
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas       357 Jun  4 07:06 output.list
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas       620 Jun  4 07:06 runtime_log
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas    696320 Jun  4 07:06 result.tar.gz
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas      8646 Jun  4 07:06 runtime_log.err
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas       647 Jun  4 07:06 Q67MDmcQvg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpiaKDmtlOyTo.diag
[2025-06-04 07:06:18] -rw-r--r--. 1 boincer umatlas     21240 Jun  4 07:06 stderr.txt
[2025-06-04 07:06:18] HITS file was successfully produced:
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas 177765878 Jun  4 07:05 shared/HITS.pool.root.1
[2025-06-04 07:06:18]  *** Contents of shared directory: ***
[2025-06-04 07:06:18] total 384100
[2025-06-04 07:06:18] -rw-r--r--. 2 boincer umatlas 214319530 Jun  4 06:05 ATLAS.root_0
[2025-06-04 07:06:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:05 start_atlas.sh
[2025-06-04 07:06:18] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 06:05 input.tar.gz
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas 177765878 Jun  4 07:05 HITS.pool.root.1
[2025-06-04 07:06:18] -rw-------. 1 boincer umatlas    696320 Jun  4 07:06 result.tar.gz
07:06:20 (3499320): run_atlas exited; CPU time 29424.992104
07:06:20 (3499320): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN