Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:59:20 (2457925): wrapper (7.7.26015): starting
15:59:20 (2457925): wrapper: running run_atlas (--nthreads 6)
[2025-06-06 15:59:20] Arguments: --nthreads 6
[2025-06-06 15:59:20] Threads: 6
[2025-06-06 15:59:20] Checking for CVMFS
[2025-06-06 15:59:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 15:59:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 15:59:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 15:59:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 15:59:21] 2.11.5.0 2393197 74 56480 146846 2 186 50508861 52428800 607 130560 0 173989 99.989 72787 193 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-06 15:59:21] CVMFS is ok
[2025-06-06 15:59:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:59:21] Checking for apptainer binary...
[2025-06-06 15:59:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 15:59:21] Running /usr/bin/apptainer --version
[2025-06-06 15:59:21] apptainer version 1.3.6-1.el9
[2025-06-06 15:59:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:59:21] testio002
[2025-06-06 15:59:21] apptainer works
[2025-06-06 15:59:21] Set ATHENA_PROC_NUMBER=6
[2025-06-06 15:59:21] Set ATHENA_CORE_NUMBER=6
[2025-06-06 15:59:21] Starting ATLAS job with PandaID=6678313978
[2025-06-06 15:59:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 17:09:10]  *** The last 200 lines of the pilot log: ***
[2025-06-06 17:09:10]  is_altstaged=None
[2025-06-06 17:09:10]  is_tar=False
[2025-06-06 17:09:10]  lfn=log.45006595._052863.job.log.tgz.1
[2025-06-06 17:09:10]  mtime=0
[2025-06-06 17:09:10]  protocol_id=None
[2025-06-06 17:09:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 17:09:10]  replicas=None
[2025-06-06 17:09:10]  scope=mc23_13p6TeV
[2025-06-06 17:09:10]  status=None
[2025-06-06 17:09:10]  status_code=0
[2025-06-06 17:09:10]  storage_token=
[2025-06-06 17:09:10]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6678313978/log.45006595._052863.job.log.tgz.1
[2025-06-06 17:09:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/ce/log.45006595._052863.job.log.tgz.1
[2025-06-06 17:09:10]  workdir=None
[2025-06-06 17:09:10] ]
[2025-06-06 17:09:10] 2025-06-06 08:08:47,413 | INFO     | transferring file log.45006595._052863.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6678313978/log.45006595._052863.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-06 17:09:10] 2025-06-06 08:08:47,413 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6678313978/log.45006595._052863.job.log.tgz.1 /var/lib/boinc/slots/2/log.45006595._052863.job
[2025-06-06 17:09:10] 2025-06-06 08:08:47,420 | INFO     | adding to output.list: log.45006595._052863.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/ce/log.45006595._052863.job.log.tg
[2025-06-06 17:09:10] 2025-06-06 08:08:47,420 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 17:09:10] 2025-06-06 08:08:47,421 | INFO     | summary of transferred files:
[2025-06-06 17:09:10] 2025-06-06 08:08:47,421 | INFO     |  -- lfn=log.45006595._052863.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 17:09:10] 2025-06-06 08:08:47,421 | INFO     | stage-out finished correctly
[2025-06-06 17:09:10] 2025-06-06 08:08:47,511 | INFO     | PID=2461650 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 17:09:10] 2025-06-06 08:08:48,859 | WARNING  | process 2468281 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 17:09:10] 2025-06-06 08:08:48,859 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6678313978/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:09:10] 2025-06-06 08:08:48,899 | INFO     | number of running child processes to parent process 2468281: 1
[2025-06-06 17:09:10] 2025-06-06 08:08:48,899 | INFO     | maximum number of monitored processes: 6
[2025-06-06 17:09:10] 2025-06-06 08:08:49,259 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 17:09:10] 2025-06-06 08:08:50,643 | INFO     | job 6678313978 has state=finished
[2025-06-06 17:09:10] 2025-06-06 08:08:50,643 | INFO     | preparing for final server update for job 6678313978 in state='finished'
[2025-06-06 17:09:10] 2025-06-06 08:08:50,644 | INFO     | this job has now completed (state=finished)
[2025-06-06 17:09:10] 2025-06-06 08:08:50,644 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 17:09:10] 2025-06-06 08:08:50,644 | INFO     | log transfer has been attempted: DONE
[2025-06-06 17:09:10] 2025-06-06 08:08:50,644 | INFO     | job 6678313978 has finished - writing final server update
[2025-06-06 17:09:10] 2025-06-06 08:08:50,644 | INFO     | total number of processed events: 400 (read)
[2025-06-06 17:09:10] 2025-06-06 08:08:50,644 | INFO     | executing command: lscpu
[2025-06-06 17:09:10] 2025-06-06 08:08:50,655 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 17:09:10] 2025-06-06 08:08:51,402 | INFO     | monitor loop #310: job 0:6678313978 is in state 'finished'
[2025-06-06 17:09:10] 2025-06-06 08:08:51,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 17:09:10] 2025-06-06 08:08:52,065 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 17:09:10] 2025-06-06 08:08:52,065 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6678313978/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 17:09:10] 2025-06-06 08:08:52,066 | INFO     | extracted standard info from prmon json
[2025-06-06 17:09:10] 2025-06-06 08:08:52,066 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 17:09:10] 2025-06-06 08:08:52,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 17:09:10] 2025-06-06 08:08:52,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 17:09:10] 2025-06-06 08:08:52,066 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | fitting pss+swap vs Time
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | sum of square deviations: 70364110.0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | sum of deviations: 14898731256.0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | mean x: 1749195317.0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | mean y: 2393746.606557377
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | -- intersect: -370368111078.0367
[2025-06-06 17:09:10] 2025-06-06 08:08:52,067 | INFO     | intersect: -370368111078.0367
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | chi2: 1.5388675443062299
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | -- intersect: -370368111078.0367
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | current memory leak: 211.74 B/s (using 61 data points, chi2=1.54)
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | ..............................
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . Timing measurements:
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . get job = 0 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . initial setup = 4 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . payload setup = 1 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . stage-in = 0 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . payload execution = 4142 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . stage-out = 0 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | . log creation = 0 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,068 | INFO     | ..............................
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | 
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | job summary report
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | --------------------------------------------------
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | PanDA job id: 6678313978
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | task id: 45006595
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | errors: (none)
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | pilot state: finished 
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | transexitcode: 0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,553 | INFO     | exeerrorcode: 0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | exeerrordiag: 
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | exitcode: 0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | exitmsg: OK
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | cpuconsumptiontime: 20217 s
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | nevents: 400
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | neventsw: 0
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | pid: 2468281
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | pgrp: 2468281
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | corecount: 6
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | event service: False
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | sizes: {0: 2397342, 1: 2397548, 11: 2397576, 4147: 2423420, 4148: 2432416, 4150: 2432416, 4153: 2432714}
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | --------------------------------------------------
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | 
[2025-06-06 17:09:10] 2025-06-06 08:08:52,554 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-06-06 17:09:10] 2025-06-06 08:08:52,561 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 17:09:10] 2025-06-06 08:08:52,562 | INFO     | job 6678313978 has completed (purged errors)
[2025-06-06 17:09:10] 2025-06-06 08:08:52,563 | INFO     | overall cleanup function is called
[2025-06-06 17:09:10] 2025-06-06 08:08:53,565 | INFO     | --- collectZombieJob: --- 10, [2468281]
[2025-06-06 17:09:10] 2025-06-06 08:08:53,565 | INFO     | zombie collector waiting for pid 2468281
[2025-06-06 17:09:10] 2025-06-06 08:08:53,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 17:09:10] 2025-06-06 08:08:53,565 | INFO     | collected zombie processes
[2025-06-06 17:09:10] 2025-06-06 08:08:53,565 | INFO     | will attempt to kill all subprocesses of pid=2468281
[2025-06-06 17:09:10] 2025-06-06 08:08:53,608 | INFO     | process IDs to be killed: [2468281] (in reverse order)
[2025-06-06 17:09:10] 2025-06-06 08:08:53,625 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 17:09:10] 2025-06-06 08:08:53,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 17:09:10] 2025-06-06 08:08:53,628 | INFO     | did not find any defunct processes belonging to 2468281
[2025-06-06 17:09:10] 2025-06-06 08:08:53,629 | INFO     | did not find any defunct processes belonging to 2468281
[2025-06-06 17:09:10] 2025-06-06 08:08:53,629 | INFO     | ready for new job
[2025-06-06 17:09:10] 2025-06-06 08:08:53,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 17:09:10] 2025-06-06 08:08:53,630 | INFO     | **************************************
[2025-06-06 17:09:10] 2025-06-06 08:08:53,630 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 17:09:10] 2025-06-06 08:08:53,630 | INFO     | **************************************
[2025-06-06 17:09:10] 2025-06-06 08:08:53,630 | INFO     | 
[2025-06-06 17:09:10] 2025-06-06 08:08:53,631 | INFO     | architecture information:
[2025-06-06 17:09:10] 2025-06-06 08:08:53,631 | INFO     | executing command: cat /etc/os-release
[2025-06-06 17:09:10] 2025-06-06 08:08:53,636 | INFO     | cat /etc/os-release:
[2025-06-06 17:09:10] NAME="CentOS Linux"
[2025-06-06 17:09:10] VERSION="7 (Core)"
[2025-06-06 17:09:10] ID="centos"
[2025-06-06 17:09:10] ID_LIKE="rhel fedora"
[2025-06-06 17:09:10] VERSION_ID="7"
[2025-06-06 17:09:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 17:09:10] ANSI_COLOR="0;31"
[2025-06-06 17:09:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 17:09:10] HOME_URL="https://www.centos.org/"
[2025-06-06 17:09:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 17:09:10] 
[2025-06-06 17:09:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 17:09:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 17:09:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 17:09:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 17:09:10] 
[2025-06-06 17:09:10] 2025-06-06 08:08:53,637 | INFO     | **************************************
[2025-06-06 17:09:10] 2025-06-06 08:08:54,139 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | INFO     | sufficient remaining disk space (293864472576 B)
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | INFO     | update_server=False
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 17:09:10] 2025-06-06 08:08:54,147 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 17:09:10] 2025-06-06 08:08:54,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 17:09:10] 2025-06-06 08:08:54,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 17:09:10] 2025-06-06 08:08:54,408 | INFO     | all payload control threads have been joined
[2025-06-06 17:09:10] 2025-06-06 08:08:54,591 | INFO     | all data control threads have been joined
[2025-06-06 17:09:10] 2025-06-06 08:08:54,830 | INFO     | all job control threads have been joined
[2025-06-06 17:09:10] 2025-06-06 08:08:54,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:09:10] 2025-06-06 08:08:54,910 | INFO     | aborting loop
[2025-06-06 17:09:10] 2025-06-06 08:08:55,152 | INFO     | [job] retrieve thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,155 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,161 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 17:09:10] 2025-06-06 08:08:55,413 | INFO     | [payload] control thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 17:09:10] 2025-06-06 08:08:55,509 | INFO     | [payload] failed_post thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,596 | INFO     | [data] control thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,835 | INFO     | [job] control thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:55,915 | INFO     | [job] job monitor thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:56,092 | INFO     | [payload] validate_post thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:56,439 | INFO     | [data] copytool_in thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:56,508 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:56,583 | INFO     | [job] validate thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:57,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 17:09:10] 2025-06-06 08:08:57,477 | INFO     | [data] copytool_out thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:58,132 | INFO     | [job] queue monitor thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:08:59,315 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:09:04,433 | INFO     | job.realtimelogging is not enabled
[2025-06-06 17:09:10] 2025-06-06 08:09:05,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 17:09:10] 2025-06-06 08:09:05,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140084948174656)>', '<ExcThread(monitor, started 140084183561984)>']
[2025-06-06 17:09:10] 2025-06-06 08:09:06,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 17:09:10] 2025-06-06 08:09:06,208 | INFO     | [monitor] control thread has ended
[2025-06-06 17:09:10] 2025-06-06 08:09:10,697 | INFO     | all workflow threads have been joined
[2025-06-06 17:09:10] 2025-06-06 08:09:10,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 17:09:10] 2025-06-06 08:09:10,697 | INFO     | traces error code: 0
[2025-06-06 17:09:10] 2025-06-06 08:09:10,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 17:09:10] 2025-06-06 08:09:10,752 [wrapper] ==== pilot stdout END ====
[2025-06-06 17:09:10] 2025-06-06 08:09:10,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 17:09:10] 2025-06-06 08:09:10,754 [wrapper] pilotpid: 2461650
[2025-06-06 17:09:10] 2025-06-06 08:09:10,755 [wrapper] Pilot exit status: 0
[2025-06-06 17:09:10] 2025-06-06 08:09:10,758 [wrapper] pandaids: 6678313978
[2025-06-06 17:09:10] 2025-06-06 08:09:10,768 [wrapper] cleanup supervisor_pilot 2479654 2461651
[2025-06-06 17:09:10] 2025-06-06 08:09:10,770 [wrapper] Test setup, not cleaning
[2025-06-06 17:09:10] 2025-06-06 08:09:10,771 [wrapper] apfmon messages muted
[2025-06-06 17:09:10] 2025-06-06 08:09:10,772 [wrapper] ==== wrapper stdout END ====
[2025-06-06 17:09:10] 2025-06-06 08:09:10,772 [wrapper] ==== wrapper stderr END ====
[2025-06-06 17:09:10]  *** Error codes and diagnostics ***
[2025-06-06 17:09:10]     "exeErrorCode": 0,
[2025-06-06 17:09:10]     "exeErrorDiag": "",
[2025-06-06 17:09:10]     "pilotErrorCode": 0,
[2025-06-06 17:09:10]     "pilotErrorDiag": "",
[2025-06-06 17:09:10]  *** Listing of results directory ***
[2025-06-06 17:09:10] total 397572
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc    495897 Jun  4 13:58 pilot3.tar.gz
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc      5111 Jun  4 14:03 queuedata.json
[2025-06-06 17:09:10] -rwx------. 1 boinc boinc     37140 Jun  4 14:03 runpilot2-wrapper.sh
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc       100 Jun  6 15:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 17:09:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 15:59 run_atlas
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc       105 Jun  6 15:59 job.xml
[2025-06-06 17:09:10] -rw-r--r--. 2 boinc boinc     15093 Jun  6 15:59 start_atlas.sh
[2025-06-06 17:09:10] drwxrwx--x. 2 boinc boinc        68 Jun  6 15:59 shared
[2025-06-06 17:09:10] -rw-r--r--. 2 boinc boinc    508878 Jun  6 15:59 input.tar.gz
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc      9627 Jun  6 15:59 init_data.xml
[2025-06-06 17:09:10] -rw-r--r--. 2 boinc boinc 218199936 Jun  6 15:59 EVNT.45006593._002117.pool.root.1
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc         0 Jun  6 15:59 boinc_lockfile
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc      2525 Jun  6 15:59 pandaJob.out
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc    988117 Jun  6 15:59 agis_schedconf.cvmfs.json
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc   1598969 Jun  6 15:59 agis_ddmendpoints.agis.ALL.json
[2025-06-06 17:09:10] drwx------. 4 boinc boinc      4096 Jun  6 15:59 pilot3
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc 183712285 Jun  6 17:08 HITS.45006595._052863.pool.root.1
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc       529 Jun  6 17:08 boinc_task_state.xml
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc      1024 Jun  6 17:08 memory_monitor_summary.json
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc    266913 Jun  6 17:08 log.45006595._052863.job.log.tgz.1
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc        95 Jun  6 17:08 pilot_heartbeat.json
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc      7689 Jun  6 17:08 heartbeat.json
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc        27 Jun  6 17:09 wrapper_checkpoint.txt
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc      8192 Jun  6 17:09 boinc_mmap_file
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc      4549 Jun  6 17:09 pilotlog.txt
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc    418551 Jun  6 17:09 log.45006595._052863.job.log.1
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc       357 Jun  6 17:09 output.list
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc       620 Jun  6 17:09 runtime_log
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc    706560 Jun  6 17:09 result.tar.gz
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc      8617 Jun  6 17:09 runtime_log.err
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc       641 Jun  6 17:09 NFPLDmvSvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDHnKDmEBZkSm.diag
[2025-06-06 17:09:10] -rw-r--r--. 1 boinc boinc     21190 Jun  6 17:09 stderr.txt
[2025-06-06 17:09:10] HITS file was successfully produced:
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc 183712285 Jun  6 17:08 shared/HITS.pool.root.1
[2025-06-06 17:09:10]  *** Contents of shared directory: ***
[2025-06-06 17:09:10] total 393704
[2025-06-06 17:09:10] -rw-r--r--. 2 boinc boinc     15093 Jun  6 15:59 start_atlas.sh
[2025-06-06 17:09:10] -rw-r--r--. 2 boinc boinc    508878 Jun  6 15:59 input.tar.gz
[2025-06-06 17:09:10] -rw-r--r--. 2 boinc boinc 218199936 Jun  6 15:59 ATLAS.root_0
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc 183712285 Jun  6 17:08 HITS.pool.root.1
[2025-06-06 17:09:10] -rw-------. 1 boinc boinc    706560 Jun  6 17:09 result.tar.gz
17:09:11 (2457925): run_atlas exited; CPU time 20235.910480
17:09:11 (2457925): called boinc_finish(0)

</stderr_txt>
]]>

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