Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:22:32 (25290): wrapper (7.7.26015): starting
20:22:32 (25290): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:22:32] Arguments: --nthreads 8
[2025-06-04 20:22:32] Threads: 8
[2025-06-04 20:22:32] Checking for CVMFS
[2025-06-04 20:22:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:22:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:22:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:22:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:22:34] 2.11.2.0 16765 33577 91204 146791 2 16 15995391 25165824 3136 130560 0 16173958 99.775 19922692 2089 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 20:22:34] CVMFS is ok
[2025-06-04 20:22:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:22:34] Checking for apptainer binary...
[2025-06-04 20:22:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:22:34] Running /usr/bin/apptainer --version
[2025-06-04 20:22:34] apptainer version 1.3.2-1.el7
[2025-06-04 20:22:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:22:46] cg-vwn404.simple-grid.lan
[2025-06-04 20:22:46] apptainer works
[2025-06-04 20:22:46] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:22:46] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:22:46] Starting ATLAS job with PandaID=6678392101
[2025-06-04 20:22:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:28:17]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:28:17] 2025-06-04 22:22:28,900 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:28:17] 2025-06-04 22:22:28,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:28:17] 2025-06-04 22:22:28,901 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:28:17] 2025-06-04 22:22:28,901 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:28:17] 2025-06-04 22:22:28,907 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:28:17] 2025-06-04 22:22:28,907 | INFO     | sum of square deviations: 3438620752.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,909 | INFO     | sum of deviations: 80809150919.00002
[2025-06-05 00:28:17] 2025-06-04 22:22:28,909 | INFO     | mean x: 1749068849.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,910 | INFO     | mean y: 2444072.600896861
[2025-06-05 00:28:17] 2025-06-04 22:22:28,910 | INFO     | -- intersect: -41101469031.0337
[2025-06-05 00:28:17] 2025-06-04 22:22:28,910 | INFO     | intersect: -41101469031.0337
[2025-06-05 00:28:17] 2025-06-04 22:22:28,910 | INFO     | chi2: 6.846331320245518
[2025-06-05 00:28:17] 2025-06-04 22:22:28,911 | INFO     | sum of square deviations: 3212467674.5
[2025-06-05 00:28:17] 2025-06-04 22:22:28,912 | INFO     | sum of deviations: 79016021698.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,913 | INFO     | mean x: 1749068696.5
[2025-06-05 00:28:17] 2025-06-04 22:22:28,913 | INFO     | mean y: 2442865.0366972475
[2025-06-05 00:28:17] 2025-06-04 22:22:28,913 | INFO     | -- intersect: -43018830522.70166
[2025-06-05 00:28:17] 2025-06-04 22:22:28,913 | INFO     | intersect: -43018830522.70166
[2025-06-05 00:28:17] 2025-06-04 22:22:28,914 | INFO     | chi2: 6.8603871992284935
[2025-06-05 00:28:17] 2025-06-04 22:22:28,914 | INFO     | current chi2=6.8603871992284935 (change=-0.20530526972029686 %)
[2025-06-05 00:28:17] 2025-06-04 22:22:28,914 | INFO     | right removable region: 217
[2025-06-05 00:28:17] 2025-06-04 22:22:28,914 | INFO     | sum of square deviations: 3212467674.5
[2025-06-05 00:28:17] 2025-06-04 22:22:28,916 | INFO     | sum of deviations: 1739733297.999999
[2025-06-05 00:28:17] 2025-06-04 22:22:28,917 | INFO     | mean x: 1749069001.5
[2025-06-05 00:28:17] 2025-06-04 22:22:28,917 | INFO     | mean y: 2497358.8256880734
[2025-06-05 00:28:17] 2025-06-04 22:22:28,917 | INFO     | -- intersect: -944722626.160704
[2025-06-05 00:28:17] 2025-06-04 22:22:28,917 | INFO     | intersect: -944722626.160704
[2025-06-05 00:28:17] 2025-06-04 22:22:28,917 | INFO     | chi2: 1.655276889387558
[2025-06-05 00:28:17] 2025-06-04 22:22:28,917 | INFO     | current chi2=1.655276889387558 (change=75.82242500457606 %)
[2025-06-05 00:28:17] 2025-06-04 22:22:28,918 | INFO     | sum of square deviations: 2996454322.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,920 | INFO     | sum of deviations: -36273119726.99999
[2025-06-05 00:28:17] 2025-06-04 22:22:28,920 | INFO     | mean x: 1749069154.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,920 | INFO     | mean y: 2524015.892018779
[2025-06-05 00:28:17] 2025-06-04 22:22:28,920 | INFO     | -- intersect: 21175613279.438145
[2025-06-05 00:28:17] 2025-06-04 22:22:28,920 | INFO     | intersect: 21175613279.438145
[2025-06-05 00:28:17] 2025-06-04 22:22:28,921 | INFO     | chi2: 0.20735106016603363
[2025-06-05 00:28:17] 2025-06-04 22:22:28,921 | INFO     | current chi2=0.20735106016603363 (change=87.47333080674183 %)
[2025-06-05 00:28:17] 2025-06-04 22:22:28,921 | INFO     | sum of square deviations: 2790348132.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,923 | INFO     | sum of deviations: -36855064485.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,923 | INFO     | mean x: 1749069306.5
[2025-06-05 00:28:17] 2025-06-04 22:22:28,923 | INFO     | mean y: 2524399.173076923
[2025-06-05 00:28:17] 2025-06-04 22:22:28,923 | INFO     | -- intersect: 23104323540.482418
[2025-06-05 00:28:17] 2025-06-04 22:22:28,924 | INFO     | intersect: 23104323540.482418
[2025-06-05 00:28:17] 2025-06-04 22:22:28,924 | INFO     | chi2: 0.18110716826223955
[2025-06-05 00:28:17] 2025-06-04 22:22:28,924 | INFO     | current chi2=0.18110716826223955 (change=12.656743535711673 %)
[2025-06-05 00:28:17] 2025-06-04 22:22:28,924 | INFO     | left removable region: 30
[2025-06-05 00:28:17] 2025-06-04 22:22:28,925 | INFO     | sum of square deviations: 2027639878.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,926 | INFO     | sum of deviations: -15358067904.999998
[2025-06-05 00:28:17] 2025-06-04 22:22:28,926 | INFO     | mean x: 1749069581.0
[2025-06-05 00:28:17] 2025-06-04 22:22:28,926 | INFO     | mean y: 2507465.320855615
[2025-06-05 00:28:17] 2025-06-04 22:22:28,927 | INFO     | -- intersect: 13250584545.982758
[2025-06-05 00:28:17] 2025-06-04 22:22:28,927 | INFO     | intersect: 13250584545.982758
[2025-06-05 00:28:17] 2025-06-04 22:22:28,927 | INFO     | chi2: 0.11862077235196425
[2025-06-05 00:28:17] 2025-06-04 22:22:28,927 | INFO     | -- intersect: 13250584545.982758
[2025-06-05 00:28:17] 2025-06-04 22:22:28,927 | INFO     | current memory leak: -7.57 B/s (using 187 data points, chi2=0.12)
[2025-06-05 00:28:17] 2025-06-04 22:22:28,928 | INFO     | ..............................
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . Timing measurements:
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . get job = 0 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . initial setup = 9 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . payload setup = 169 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . stage-in = 0 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . payload execution = 13733 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . stage-out = 3 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | . log creation = 1 s
[2025-06-05 00:28:17] 2025-06-04 22:22:28,929 | INFO     | ..............................
[2025-06-05 00:28:17] 2025-06-04 22:22:29,067 | INFO     | 
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | job summary report
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | --------------------------------------------------
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | PanDA job id: 6678392101
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | task id: 45006595
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | errors: (none)
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | pilot state: finished 
[2025-06-05 00:28:17] 2025-06-04 22:22:29,068 | INFO     | transexitcode: 0
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | exeerrorcode: 0
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | exeerrordiag: 
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | exitcode: 0
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | exitmsg: OK
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | cpuconsumptiontime: 49274 s
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | nevents: 400
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | neventsw: 0
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | pid: 8201
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | pgrp: 8201
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | corecount: 8
[2025-06-05 00:28:17] 2025-06-04 22:22:29,069 | INFO     | event service: False
[2025-06-05 00:28:17] 2025-06-04 22:22:29,070 | INFO     | sizes: {0: 2397171, 1: 2397370, 12: 2397370, 22: 2397398, 33: 2397426, 44: 2397482, 55: 2397638, 65: 2397666, 76: 2397694, 87: 2397750, 91: 2397984, 98: 2398292, 1
[2025-06-05 00:28:17] 2025-06-04 22:22:29,070 | INFO     | --------------------------------------------------
[2025-06-05 00:28:17] 2025-06-04 22:22:29,070 | INFO     | 
[2025-06-05 00:28:17] 2025-06-04 22:22:29,070 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 00:28:17] 2025-06-04 22:22:29,113 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:28:17] 2025-06-04 22:22:29,116 | INFO     | job 6678392101 has completed (purged errors)
[2025-06-05 00:28:17] 2025-06-04 22:22:29,117 | INFO     | overall cleanup function is called
[2025-06-05 00:28:17] 2025-06-04 22:22:30,139 | INFO     | --- collectZombieJob: --- 10, [8201]
[2025-06-05 00:28:17] 2025-06-04 22:22:30,140 | INFO     | zombie collector waiting for pid 8201
[2025-06-05 00:28:17] 2025-06-04 22:22:30,167 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:28:17] 2025-06-04 22:22:30,167 | INFO     | collected zombie processes
[2025-06-05 00:28:17] 2025-06-04 22:22:30,168 | INFO     | will attempt to kill all subprocesses of pid=8201
[2025-06-05 00:28:17] 2025-06-04 22:22:30,231 | INFO     | PID=31973 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 00:28:17] 2025-06-04 22:22:30,231 | INFO     | .. there are 9 such processes running
[2025-06-05 00:28:17] 2025-06-04 22:22:30,325 | INFO     | process IDs to be killed: [8201] (in reverse order)
[2025-06-05 00:28:17] 2025-06-04 22:22:30,427 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:28:17] 2025-06-04 22:22:30,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:28:17] 2025-06-04 22:22:30,432 | INFO     | did not find any defunct processes belonging to 8201
[2025-06-05 00:28:17] 2025-06-04 22:22:30,435 | INFO     | did not find any defunct processes belonging to 8201
[2025-06-05 00:28:17] 2025-06-04 22:22:30,436 | INFO     | ready for new job
[2025-06-05 00:28:17] 2025-06-04 22:22:30,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:28:17] 2025-06-04 22:22:30,438 | INFO     | **************************************
[2025-06-05 00:28:17] 2025-06-04 22:22:30,438 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:28:17] 2025-06-04 22:22:30,438 | INFO     | **************************************
[2025-06-05 00:28:17] 2025-06-04 22:22:30,438 | INFO     | 
[2025-06-05 00:28:17] 2025-06-04 22:22:30,440 | INFO     | pilot is running in a VM
[2025-06-05 00:28:17] 2025-06-04 22:22:30,440 | INFO     | architecture information:
[2025-06-05 00:28:17] 2025-06-04 22:22:30,440 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:28:17] 2025-06-04 22:22:30,466 | INFO     | cat /etc/os-release:
[2025-06-05 00:28:17] NAME="CentOS Linux"
[2025-06-05 00:28:17] VERSION="7 (Core)"
[2025-06-05 00:28:17] ID="centos"
[2025-06-05 00:28:17] ID_LIKE="rhel fedora"
[2025-06-05 00:28:17] VERSION_ID="7"
[2025-06-05 00:28:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:28:17] ANSI_COLOR="0;31"
[2025-06-05 00:28:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:28:17] HOME_URL="https://www.centos.org/"
[2025-06-05 00:28:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:28:17] 
[2025-06-05 00:28:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:28:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:28:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:28:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:28:17] 
[2025-06-05 00:28:17] 2025-06-04 22:22:30,466 | INFO     | **************************************
[2025-06-05 00:28:17] 2025-06-04 22:22:30,969 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 00:28:17] 2025-06-04 22:22:31,254 | INFO     | sufficient remaining disk space (497047044096 B)
[2025-06-05 00:28:17] 2025-06-04 22:22:31,254 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:28:17] 2025-06-04 22:22:31,255 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:28:17] 2025-06-04 22:22:31,255 | INFO     | update_server=False
[2025-06-05 00:28:17] 2025-06-04 22:22:31,255 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:28:17] 2025-06-04 22:22:31,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:28:17] 2025-06-04 22:22:31,279 | INFO     | all data control threads have been joined
[2025-06-05 00:28:17] 2025-06-04 22:22:31,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:28:17] 2025-06-04 22:22:31,590 | INFO     | aborting loop
[2025-06-05 00:28:17] 2025-06-04 22:22:32,056 | INFO     | all payload control threads have been joined
[2025-06-05 00:28:17] 2025-06-04 22:22:32,237 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:28:17] 2025-06-04 22:22:32,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:28:17] 2025-06-04 22:22:32,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:28:17] 2025-06-04 22:22:32,261 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:32,284 | INFO     | [data] control thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:32,545 | INFO     | all job control threads have been joined
[2025-06-05 00:28:17] 2025-06-04 22:22:32,596 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:32,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:32,754 | INFO     | [job] validate thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:32,953 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,061 | INFO     | [payload] control thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,090 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,095 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,211 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:28:17] 2025-06-04 22:22:33,261 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,551 | INFO     | [job] control thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,611 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:33,757 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:34,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:28:17] 2025-06-04 22:22:35,086 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:37,226 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:28:17] 2025-06-04 22:22:37,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069838964544)>', '<ExcThread(monitor, started 140069386041088)>']
[2025-06-05 00:28:17] 2025-06-04 22:22:38,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:28:17] 2025-06-04 22:22:38,273 | INFO     | [monitor] control thread has ended
[2025-06-05 00:28:17] 2025-06-04 22:22:42,659 | INFO     | all workflow threads have been joined
[2025-06-05 00:28:17] 2025-06-04 22:22:42,659 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:28:17] 2025-06-04 22:22:42,660 | INFO     | traces error code: 0
[2025-06-05 00:28:17] 2025-06-04 22:22:42,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:28:17] 2025-06-04 22:22:42,894 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:28:17] 2025-06-04 22:22:42,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:28:17] 2025-06-04 22:22:42,955 [wrapper] pilotpid: 31973
[2025-06-05 00:28:17] 2025-06-04 22:22:42,968 [wrapper] Pilot exit status: 0
[2025-06-05 00:28:17] 2025-06-04 22:22:43,455 [wrapper] pandaids: 6678392101
[2025-06-05 00:28:17] 2025-06-04 22:22:44,401 [wrapper] cleanup supervisor_pilot 20460 31974
[2025-06-05 00:28:17] 2025-06-04 22:22:44,496 [wrapper] Test setup, not cleaning
[2025-06-05 00:28:17] 2025-06-04 22:22:44,597 [wrapper] apfmon messages muted
[2025-06-05 00:28:17] 2025-06-04 22:22:44,666 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:28:17] 2025-06-04 22:22:44,769 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:28:17]  *** Error codes and diagnostics ***
[2025-06-05 00:28:17]     "exeErrorCode": 0,
[2025-06-05 00:28:17]     "exeErrorDiag": "",
[2025-06-05 00:28:17]     "pilotErrorCode": 0,
[2025-06-05 00:28:17]     "pilotErrorDiag": "",
[2025-06-05 00:28:17]  *** Listing of results directory ***
[2025-06-05 00:28:17] total 387444
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc    495897 Jun  4 09:34 pilot3.tar.gz
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc      5111 Jun  4 09:38 queuedata.json
[2025-06-05 00:28:17] -rwx------. 1 boinc boinc     37140 Jun  4 09:38 runpilot2-wrapper.sh
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc       100 Jun  4 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:28:17] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 20:22 run_atlas
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc       105 Jun  4 20:22 job.xml
[2025-06-05 00:28:17] -rw-r--r--. 2 boinc boinc 213495061 Jun  4 20:22 EVNT.45006593._002206.pool.root.1
[2025-06-05 00:28:17] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:22 start_atlas.sh
[2025-06-05 00:28:17] drwxrwx--x. 2 boinc boinc        68 Jun  4 20:22 shared
[2025-06-05 00:28:17] -rw-r--r--. 2 boinc boinc    508885 Jun  4 20:22 input.tar.gz
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc      6392 Jun  4 20:22 init_data.xml
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc         0 Jun  4 20:22 boinc_lockfile
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc      2525 Jun  4 20:22 pandaJob.out
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc    990984 Jun  4 20:25 agis_schedconf.cvmfs.json
[2025-06-05 00:28:17] drwx------. 4 boinc boinc      4096 Jun  4 20:26 pilot3
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc 176252497 Jun  5 00:20 HITS.45006595._055130.pool.root.1
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc       531 Jun  5 00:20 boinc_task_state.xml
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc      1019 Jun  5 00:21 memory_monitor_summary.json
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc   1598969 Jun  5 00:21 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc    374128 Jun  5 00:21 log.45006595._055130.job.log.tgz.1
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc        95 Jun  5 00:21 pilot_heartbeat.json
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc      7694 Jun  5 00:22 heartbeat.json
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc      4416 Jun  5 00:22 pilotlog.txt
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc   1210338 Jun  5 00:22 log.45006595._055130.job.log.1
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc       357 Jun  5 00:22 output.list
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc       620 Jun  5 00:22 runtime_log
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc   1607680 Jun  5 00:22 result.tar.gz
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc      8659 Jun  5 00:22 runtime_log.err
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc       657 Jun  5 00:22 pSOKDmGtxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFgnKDmcC3SDm.diag
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc      8192 Jun  5 00:28 boinc_mmap_file
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc        28 Jun  5 00:28 wrapper_checkpoint.txt
[2025-06-05 00:28:17] -rw-r--r--. 1 boinc boinc     20584 Jun  5 00:28 stderr.txt
[2025-06-05 00:28:17] HITS file was successfully produced:
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc 176252497 Jun  5 00:20 shared/HITS.pool.root.1
[2025-06-05 00:28:17]  *** Contents of shared directory: ***
[2025-06-05 00:28:17] total 382704
[2025-06-05 00:28:17] -rw-r--r--. 2 boinc boinc 213495061 Jun  4 20:22 ATLAS.root_0
[2025-06-05 00:28:17] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:22 start_atlas.sh
[2025-06-05 00:28:17] -rw-r--r--. 2 boinc boinc    508885 Jun  4 20:22 input.tar.gz
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc 176252497 Jun  5 00:20 HITS.pool.root.1
[2025-06-05 00:28:17] -rw-------. 1 boinc boinc   1607680 Jun  5 00:22 result.tar.gz
00:28:19 (25290): run_atlas exited; CPU time 49472.627207
00:28:19 (25290): called boinc_finish(0)

</stderr_txt>
]]>

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