Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:06:37 (120573): wrapper (7.7.26015): starting
07:06:37 (120573): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 07:06:37] Arguments: --nthreads 9
[2025-06-04 07:06:37] Threads: 9
[2025-06-04 07:06:37] Checking for CVMFS
[2025-06-04 07:06:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:06:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:06:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:06:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:06:40] 2.11.2.0 5225 28701 233112 146777 0 268 11808407 18432000 9455 130560 0 57179745 99.405 70608627 29457 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 07:06:40] CVMFS is ok
[2025-06-04 07:06:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:06:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:06:40] Further information can be found at the LHC@home message board.
[2025-06-04 07:06:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:06:40] Checking for apptainer binary...
[2025-06-04 07:06:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:06:40] Running /usr/bin/apptainer --version
[2025-06-04 07:06:40] apptainer version 1.3.2-1.el7
[2025-06-04 07:06:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:06:43] c-210-33-2.aglt2.org
[2025-06-04 07:06:43] apptainer works
[2025-06-04 07:06:43] Set ATHENA_PROC_NUMBER=9
[2025-06-04 07:06:43] Set ATHENA_CORE_NUMBER=9
[2025-06-04 07:06:44] Starting ATLAS job with PandaID=6678247940
[2025-06-04 07:06:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:52:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:52:46] 2025-06-04 12:52:32,434 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678247940/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,435 | INFO     | extracted standard info from prmon json
[2025-06-04 08:52:46] 2025-06-04 12:52:32,435 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:52:46] 2025-06-04 12:52:32,435 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:52:46] 2025-06-04 12:52:32,436 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:52:46] 2025-06-04 12:52:32,436 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:52:46] 2025-06-04 12:52:32,438 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:52:46] 2025-06-04 12:52:32,438 | INFO     | sum of square deviations: 319450412.9900984
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | sum of deviations: 21380109666.881184
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | mean x: 1749038432.009901
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | mean y: 2457416.118811881
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | -- intersect: -117056816785.29117
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | intersect: -117056816785.29117
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | chi2: 1.8261700583789677
[2025-06-04 08:52:46] 2025-06-04 12:52:32,439 | INFO     | sum of square deviations: 274314987.98958343
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | sum of deviations: 20277466323.822926
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | mean x: 1749038279.5104167
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | mean y: 2453687.6770833335
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | -- intersect: -129287108912.5131
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | intersect: -129287108912.5131
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | chi2: 1.8268429914451745
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | current chi2=1.8268429914451745 (change=-0.03684941953347379 %)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,440 | INFO     | right removable region: 95
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | sum of square deviations: 274314377.98958343
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | sum of deviations: 2879956695.322919
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | mean x: 1749038584.5104167
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | mean y: 2518828.1770833335
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | -- intersect: -18360191208.225647
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | intersect: -18360191208.225647
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | chi2: 0.053337005153380905
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | current chi2=0.053337005153380905 (change=97.07929691932819 %)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,441 | INFO     | sum of square deviations: 233643542.98901114
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | sum of deviations: 49800372.69230772
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | mean x: 1749038737.010989
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | mean y: 2529307.3076923075
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | -- intersect: -370272696.30054396
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | intersect: -370272696.30054396
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | chi2: 0.000358321812755671
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | current chi2=0.000358321812755671 (change=99.32819285273847 %)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,442 | INFO     | sum of square deviations: 197205345.48837242
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | sum of deviations: 17274412.976744182
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | mean x: 1749038889.511628
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | mean y: 2529457.023255814
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | -- intersect: -150679473.5713327
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | intersect: -150679473.5713327
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | chi2: 0.0002954989838731565
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | current chi2=0.0002954989838731565 (change=17.532515924547283 %)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | left removable region: 30
[2025-06-04 08:52:46] 2025-06-04 12:52:32,443 | INFO     | sum of square deviations: 85137578.98461549
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | sum of deviations: -186936947.92307696
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | mean x: 1749039164.0153847
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | mean y: 2530690.923076923
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | -- intersect: 3842903497.131817
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | intersect: 3842903497.131817
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | chi2: 9.242836092784974e-05
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | -- intersect: 3842903497.131817
[2025-06-04 08:52:46] 2025-06-04 12:52:32,444 | INFO     | current memory leak: -2.20 B/s (using 65 data points, chi2=0.00)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | ..............................
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . Timing measurements:
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . get job = 0 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . initial setup = 4 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . payload setup = 33 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . stage-in = 0 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . payload execution = 6196 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . stage-out = 0 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | . log creation = 0 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,445 | INFO     | ..............................
[2025-06-04 08:52:46] 2025-06-04 12:52:32,782 | INFO     | 
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | job summary report
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | --------------------------------------------------
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | PanDA job id: 6678247940
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | task id: 45006595
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | errors: (none)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | pilot state: finished 
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | transexitcode: 0
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | exeerrorcode: 0
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | exeerrordiag: 
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | exitcode: 0
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | exitmsg: OK
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | cpuconsumptiontime: 34723 s
[2025-06-04 08:52:46] 2025-06-04 12:52:32,783 | INFO     | nevents: 400
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | neventsw: 0
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | pid: 131455
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | pgrp: 131455
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | corecount: 9
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | event service: False
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | sizes: {0: 2405184, 11: 2405184, 22: 2405446, 32: 2405446, 6234: 2432100, 6235: 2441041, 6237: 2441225, 6245: 2441395}
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | --------------------------------------------------
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | 
[2025-06-04 08:52:46] 2025-06-04 12:52:32,784 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:52:46] 2025-06-04 12:52:32,823 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,823 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,824 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,825 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:52:46] 2025-06-04 12:52:32,825 | INFO     | job 6678247940 has completed (purged errors)
[2025-06-04 08:52:46] 2025-06-04 12:52:32,825 | INFO     | overall cleanup function is called
[2025-06-04 08:52:46] 2025-06-04 12:52:33,829 | INFO     | --- collectZombieJob: --- 10, [131455]
[2025-06-04 08:52:46] 2025-06-04 12:52:33,829 | INFO     | zombie collector waiting for pid 131455
[2025-06-04 08:52:46] 2025-06-04 12:52:33,829 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:52:46] 2025-06-04 12:52:33,829 | INFO     | collected zombie processes
[2025-06-04 08:52:46] 2025-06-04 12:52:33,829 | INFO     | will attempt to kill all subprocesses of pid=131455
[2025-06-04 08:52:46] 2025-06-04 12:52:33,995 | INFO     | process IDs to be killed: [131455] (in reverse order)
[2025-06-04 08:52:46] 2025-06-04 12:52:34,090 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:52:46] 2025-06-04 12:52:34,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:52:46] 2025-06-04 12:52:34,096 | INFO     | did not find any defunct processes belonging to 131455
[2025-06-04 08:52:46] 2025-06-04 12:52:34,102 | INFO     | did not find any defunct processes belonging to 131455
[2025-06-04 08:52:46] 2025-06-04 12:52:34,102 | INFO     | ready for new job
[2025-06-04 08:52:46] 2025-06-04 12:52:34,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:52:46] 2025-06-04 12:52:34,104 | INFO     | **************************************
[2025-06-04 08:52:46] 2025-06-04 12:52:34,104 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:52:46] 2025-06-04 12:52:34,104 | INFO     | **************************************
[2025-06-04 08:52:46] 2025-06-04 12:52:34,104 | INFO     | 
[2025-06-04 08:52:46] 2025-06-04 12:52:34,107 | INFO     | architecture information:
[2025-06-04 08:52:46] 2025-06-04 12:52:34,107 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:52:46] 2025-06-04 12:52:34,139 | INFO     | cat /etc/os-release:
[2025-06-04 08:52:46] NAME="CentOS Linux"
[2025-06-04 08:52:46] VERSION="7 (Core)"
[2025-06-04 08:52:46] ID="centos"
[2025-06-04 08:52:46] ID_LIKE="rhel fedora"
[2025-06-04 08:52:46] VERSION_ID="7"
[2025-06-04 08:52:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:52:46] ANSI_COLOR="0;31"
[2025-06-04 08:52:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:52:46] HOME_URL="https://www.centos.org/"
[2025-06-04 08:52:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:52:46] 
[2025-06-04 08:52:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:52:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:52:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:52:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:52:46] 
[2025-06-04 08:52:46] 2025-06-04 12:52:34,139 | INFO     | **************************************
[2025-06-04 08:52:46] 2025-06-04 12:52:34,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:52:46] 2025-06-04 12:52:34,666 | INFO     | sufficient remaining disk space (56550752256 B)
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | INFO     | update_server=False
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:52:46] 2025-06-04 12:52:34,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:52:46] 2025-06-04 12:52:34,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:52:46] 2025-06-04 12:52:34,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:52:46] 2025-06-04 12:52:34,668 | INFO     | aborting loop
[2025-06-04 08:52:46] 2025-06-04 12:52:34,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:52:46] 2025-06-04 12:52:35,245 | INFO     | all data control threads have been joined
[2025-06-04 08:52:46] 2025-06-04 12:52:35,529 | INFO     | all job control threads have been joined
[2025-06-04 08:52:46] 2025-06-04 12:52:35,611 | INFO     | all payload control threads have been joined
[2025-06-04 08:52:46] 2025-06-04 12:52:35,669 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:35,675 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:35,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:52:46] 2025-06-04 12:52:35,724 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,246 | INFO     | [data] control thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,281 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,335 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,464 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,535 | INFO     | [job] control thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,609 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,617 | INFO     | [payload] control thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,674 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,771 | INFO     | [job] validate thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:36,843 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:37,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:37,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:52:46] 2025-06-04 12:52:38,547 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:39,689 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:52:46] 2025-06-04 12:52:40,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825151502144)>', '<ExcThread(monitor, started 139824707122944)>']
[2025-06-04 08:52:46] 2025-06-04 12:52:41,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:52:46] 2025-06-04 12:52:41,707 | INFO     | [monitor] control thread has ended
[2025-06-04 08:52:46] 2025-06-04 12:52:45,881 | INFO     | all workflow threads have been joined
[2025-06-04 08:52:46] 2025-06-04 12:52:45,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:52:46] 2025-06-04 12:52:45,882 | INFO     | traces error code: 0
[2025-06-04 08:52:46] 2025-06-04 12:52:45,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:52:46] 2025-06-04 12:52:46,242 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:52:46] 2025-06-04 12:52:46,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:52:46] 2025-06-04 12:52:46,255 [wrapper] pilotpid: 124311
[2025-06-04 08:52:46] 2025-06-04 12:52:46,259 [wrapper] Pilot exit status: 0
[2025-06-04 08:52:46] 2025-06-04 12:52:46,271 [wrapper] pandaids: 6678247940
[2025-06-04 08:52:46] 2025-06-04 12:52:46,326 [wrapper] cleanup supervisor_pilot  24534 124312
[2025-06-04 08:52:46] 2025-06-04 12:52:46,331 [wrapper] Test setup, not cleaning
[2025-06-04 08:52:46] 2025-06-04 12:52:46,336 [wrapper] apfmon messages muted
[2025-06-04 08:52:46] 2025-06-04 12:52:46,340 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:52:46] 2025-06-04 12:52:46,345 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:52:46]  *** Error codes and diagnostics ***
[2025-06-04 08:52:46]     "exeErrorCode": 0,
[2025-06-04 08:52:46]     "exeErrorDiag": "",
[2025-06-04 08:52:46]     "pilotErrorCode": 0,
[2025-06-04 08:52:46]     "pilotErrorDiag": "",
[2025-06-04 08:52:46]  *** Listing of results directory ***
[2025-06-04 08:52:46] total 392556
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 21:59 pilot3.tar.gz
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 22:17 queuedata.json
[2025-06-04 08:52:46] -rwx------ 1 boincer umatlas     37140 Jun  3 22:18 runpilot2-wrapper.sh
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas       100 Jun  4 07:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:52:46] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 07:06 run_atlas
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas       105 Jun  4 07:06 job.xml
[2025-06-04 08:52:46] -rw-r--r-- 2 boincer umatlas 216206243 Jun  4 07:06 EVNT.45006593._002029.pool.root.1
[2025-06-04 08:52:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:06 start_atlas.sh
[2025-06-04 08:52:46] drwxrwx--x 2 boincer umatlas      4096 Jun  4 07:06 shared
[2025-06-04 08:52:46] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 07:06 input.tar.gz
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas         0 Jun  4 07:06 boinc_lockfile
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 07:06 pandaJob.out
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas    986812 Jun  4 07:07 agis_schedconf.cvmfs.json
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas   1603667 Jun  4 07:07 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:52:46] drwx------ 4 boincer umatlas      4096 Jun  4 07:07 pilot3
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas      6269 Jun  4 08:50 init_data.xml
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas 179987671 Jun  4 08:51 HITS.45006595._050617.pool.root.1
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas       529 Jun  4 08:51 boinc_task_state.xml
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas      1051 Jun  4 08:52 memory_monitor_summary.json
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas        95 Jun  4 08:52 pilot_heartbeat.json
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas    344977 Jun  4 08:52 log.45006595._050617.job.log.tgz.1
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas      7741 Jun  4 08:52 heartbeat.json
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 08:52 boinc_mmap_file
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas        27 Jun  4 08:52 wrapper_checkpoint.txt
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas      4476 Jun  4 08:52 pilotlog.txt
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas    629342 Jun  4 08:52 log.45006595._050617.job.log.1
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas       357 Jun  4 08:52 output.list
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas       620 Jun  4 08:52 runtime_log
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas    993280 Jun  4 08:52 result.tar.gz
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 08:52 runtime_log.err
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas       660 Jun  4 08:52 8yuMDmUtsg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrrmKDmrg14Dn.diag
[2025-06-04 08:52:46] -rw-r--r-- 1 boincer umatlas     20955 Jun  4 08:52 stderr.txt
[2025-06-04 08:52:46] HITS file was successfully produced:
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas 179987671 Jun  4 08:51 shared/HITS.pool.root.1
[2025-06-04 08:52:46]  *** Contents of shared directory: ***
[2025-06-04 08:52:46] total 388404
[2025-06-04 08:52:46] -rw-r--r-- 2 boincer umatlas 216206243 Jun  4 07:06 ATLAS.root_0
[2025-06-04 08:52:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:06 start_atlas.sh
[2025-06-04 08:52:46] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 07:06 input.tar.gz
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas 179987671 Jun  4 08:51 HITS.pool.root.1
[2025-06-04 08:52:46] -rw------- 1 boincer umatlas    993280 Jun  4 08:52 result.tar.gz
08:52:48 (120573): run_atlas exited; CPU time 34794.747033
08:52:48 (120573): called boinc_finish(0)

</stderr_txt>
]]>

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