Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:50:05 (201141): wrapper (7.7.26015): starting
06:50:05 (201141): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 06:50:05] Arguments: --nthreads 12
[2025-06-04 06:50:05] Threads: 12
[2025-06-04 06:50:05] Checking for CVMFS
[2025-06-04 06:50:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:50:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:50:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:50:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:50:06] 2.12.6.0 5613 1241 122468 146777 0 557 33205487 40960001 12008 16776704 0 6136720 99.918 1687668 39886 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 06:50:06] CVMFS is ok
[2025-06-04 06:50:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:50:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 06:50:06] Further information can be found at the LHC@home message board.
[2025-06-04 06:50:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:50:06] Checking for apptainer binary...
[2025-06-04 06:50:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:50:06] Running /usr/bin/apptainer --version
[2025-06-04 06:50:06] apptainer version 1.4.1-1.el9
[2025-06-04 06:50:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:50:06] c6-8-12-2.aglt2.org
[2025-06-04 06:50:06] apptainer works
[2025-06-04 06:50:06] Set ATHENA_PROC_NUMBER=12
[2025-06-04 06:50:06] Set ATHENA_CORE_NUMBER=12
[2025-06-04 06:50:06] Starting ATLAS job with PandaID=6678391454
[2025-06-04 06:50:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:13:28 (1320947): wrapper (7.7.26015): starting
09:13:28 (1320947): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 09:13:28] Arguments: --nthreads 12
[2025-06-06 09:13:28] Threads: 12
[2025-06-06 09:13:28] This job has been restarted, cleaning up previous attempt
[2025-06-06 09:13:28] Checking for CVMFS
[2025-06-06 09:13:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 09:13:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 09:13:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 09:13:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 09:13:28] 2.12.6.0 5613 4264 184896 146859 0 533 37149155 40960000 12044 16776704 0 16583377 99.777 9544273 34515 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-06 09:13:28] CVMFS is ok
[2025-06-06 09:13:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 09:13:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 09:13:28] Further information can be found at the LHC@home message board.
[2025-06-06 09:13:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 09:13:28] Checking for apptainer binary...
[2025-06-06 09:13:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 09:13:28] Running /usr/bin/apptainer --version
[2025-06-06 09:13:28] apptainer version 1.4.1-1.el9
[2025-06-06 09:13:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 09:13:28] c6-8-12-2.aglt2.org
[2025-06-06 09:13:28] apptainer works
[2025-06-06 09:13:28] Set ATHENA_PROC_NUMBER=12
[2025-06-06 09:13:28] Set ATHENA_CORE_NUMBER=12
[2025-06-06 09:13:28] Starting ATLAS job with PandaID=6678391454
[2025-06-06 09:13:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 10:03:21]  *** The last 200 lines of the pilot log: ***
[2025-06-06 10:03:21]  filetype=log
[2025-06-06 10:03:21]  guid=e374cec1-2e10-478a-8657-385ba59f7660
[2025-06-06 10:03:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 10:03:21]  is_altstaged=None
[2025-06-06 10:03:21]  is_tar=False
[2025-06-06 10:03:21]  lfn=log.45006595._054816.job.log.tgz.1
[2025-06-06 10:03:21]  mtime=0
[2025-06-06 10:03:21]  protocol_id=None
[2025-06-06 10:03:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 10:03:21]  replicas=None
[2025-06-06 10:03:21]  scope=mc23_13p6TeV
[2025-06-06 10:03:21]  status=None
[2025-06-06 10:03:21]  status_code=0
[2025-06-06 10:03:21]  storage_token=
[2025-06-06 10:03:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678391454/log.45006595._054816.job.log.tgz.1
[2025-06-06 10:03:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/c7/log.45006595._054816.job.log.tgz.1
[2025-06-06 10:03:21]  workdir=None
[2025-06-06 10:03:21] ]
[2025-06-06 10:03:21] 2025-06-06 14:02:56,153 | INFO     | transferring file log.45006595._054816.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678391454/log.45006595._054816.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-06 10:03:21] 2025-06-06 14:02:56,153 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678391454/log.45006595._054816.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054816.job
[2025-06-06 10:03:21] 2025-06-06 14:02:56,172 | INFO     | adding to output.list: log.45006595._054816.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/c7/log.45006595._054816.job.log.tg
[2025-06-06 10:03:21] 2025-06-06 14:02:56,176 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 10:03:21] 2025-06-06 14:02:56,176 | INFO     | summary of transferred files:
[2025-06-06 10:03:21] 2025-06-06 14:02:56,176 | INFO     |  -- lfn=log.45006595._054816.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 10:03:21] 2025-06-06 14:02:56,177 | INFO     | stage-out finished correctly
[2025-06-06 10:03:21] 2025-06-06 14:02:59,370 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 10:03:21] 2025-06-06 14:03:00,812 | WARNING  | process 1334684 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 10:03:21] 2025-06-06 14:03:00,813 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678391454/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 10:03:21] 2025-06-06 14:03:01,110 | INFO     | number of running child processes to parent process 1334684: 1
[2025-06-06 10:03:21] 2025-06-06 14:03:01,111 | INFO     | maximum number of monitored processes: 6
[2025-06-06 10:03:21] 2025-06-06 14:03:01,204 | INFO     | job 6678391454 has state=finished
[2025-06-06 10:03:21] 2025-06-06 14:03:01,205 | INFO     | preparing for final server update for job 6678391454 in state='finished'
[2025-06-06 10:03:21] 2025-06-06 14:03:01,205 | INFO     | this job has now completed (state=finished)
[2025-06-06 10:03:21] 2025-06-06 14:03:01,206 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 10:03:21] 2025-06-06 14:03:01,206 | INFO     | log transfer has been attempted: DONE
[2025-06-06 10:03:21] 2025-06-06 14:03:01,206 | INFO     | job 6678391454 has finished - writing final server update
[2025-06-06 10:03:21] 2025-06-06 14:03:01,206 | INFO     | total number of processed events: 400 (read)
[2025-06-06 10:03:21] 2025-06-06 14:03:01,222 | INFO     | executing command: lscpu
[2025-06-06 10:03:21] 2025-06-06 14:03:01,282 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 10:03:21] 2025-06-06 14:03:03,613 | INFO     | monitor loop #224: job 0:6678391454 is in state 'finished'
[2025-06-06 10:03:21] 2025-06-06 14:03:03,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 10:03:21] 2025-06-06 14:03:04,381 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 10:03:21] 2025-06-06 14:03:04,382 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678391454/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 10:03:21] 2025-06-06 14:03:04,383 | INFO     | extracted standard info from prmon json
[2025-06-06 10:03:21] 2025-06-06 14:03:04,383 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 10:03:21] 2025-06-06 14:03:04,383 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 10:03:21] 2025-06-06 14:03:04,383 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 10:03:21] 2025-06-06 14:03:04,383 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 10:03:21] 2025-06-06 14:03:04,385 | INFO     | fitting pss+swap vs Time
[2025-06-06 10:03:21] 2025-06-06 14:03:04,385 | INFO     | sum of square deviations: 21358540.0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,385 | INFO     | sum of deviations: 307316841.0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,385 | INFO     | mean x: 1749217169.0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,385 | INFO     | mean y: 2604487.0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,385 | INFO     | -- intersect: -25165964834.687866
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | intersect: -25165964834.687866
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | chi2: 0.027501961438146975
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | -- intersect: -25165964834.687866
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | current memory leak: 14.39 B/s (using 41 data points, chi2=0.03)
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | ..............................
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | . Timing measurements:
[2025-06-06 10:03:21] 2025-06-06 14:03:04,386 | INFO     | . get job = 0 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | . initial setup = 2 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | . payload setup = 6 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | . stage-in = 0 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | . payload execution = 2932 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | . stage-out = 0 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | . log creation = 0 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,387 | INFO     | ..............................
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | 
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | job summary report
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | --------------------------------------------------
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | PanDA job id: 6678391454
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | task id: 45006595
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | errors: (none)
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | pilot state: finished 
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | transexitcode: 0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,750 | INFO     | exeerrorcode: 0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | exeerrordiag: 
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | exitcode: 0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | exitmsg: OK
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | cpuconsumptiontime: 31210 s
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | nevents: 400
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | neventsw: 0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | pid: 1334684
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | pgrp: 1334684
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | corecount: 12
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | event service: False
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | sizes: {0: 2396514, 1: 2397370, 4: 2397576, 12: 2397604, 2942: 2422965, 2943: 2431906, 2946: 2432090, 2951: 2432260}
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | --------------------------------------------------
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | 
[2025-06-06 10:03:21] 2025-06-06 14:03:04,751 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-06 10:03:21] 2025-06-06 14:03:04,770 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 10:03:21] 2025-06-06 14:03:04,772 | INFO     | job 6678391454 has completed (purged errors)
[2025-06-06 10:03:21] 2025-06-06 14:03:04,773 | INFO     | overall cleanup function is called
[2025-06-06 10:03:21] 2025-06-06 14:03:05,780 | INFO     | --- collectZombieJob: --- 10, [1334684]
[2025-06-06 10:03:21] 2025-06-06 14:03:05,781 | INFO     | zombie collector waiting for pid 1334684
[2025-06-06 10:03:21] 2025-06-06 14:03:05,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 10:03:21] 2025-06-06 14:03:05,781 | INFO     | collected zombie processes
[2025-06-06 10:03:21] 2025-06-06 14:03:05,781 | INFO     | will attempt to kill all subprocesses of pid=1334684
[2025-06-06 10:03:21] 2025-06-06 14:03:06,044 | INFO     | process IDs to be killed: [1334684] (in reverse order)
[2025-06-06 10:03:21] 2025-06-06 14:03:06,108 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 10:03:21] 2025-06-06 14:03:06,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 10:03:21] 2025-06-06 14:03:06,126 | INFO     | did not find any defunct processes belonging to 1334684
[2025-06-06 10:03:21] 2025-06-06 14:03:06,141 | INFO     | did not find any defunct processes belonging to 1334684
[2025-06-06 10:03:21] 2025-06-06 14:03:06,142 | INFO     | ready for new job
[2025-06-06 10:03:21] 2025-06-06 14:03:06,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 10:03:21] 2025-06-06 14:03:06,145 | INFO     | **************************************
[2025-06-06 10:03:21] 2025-06-06 14:03:06,145 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 10:03:21] 2025-06-06 14:03:06,145 | INFO     | **************************************
[2025-06-06 10:03:21] 2025-06-06 14:03:06,145 | INFO     | 
[2025-06-06 10:03:21] 2025-06-06 14:03:06,161 | INFO     | architecture information:
[2025-06-06 10:03:21] 2025-06-06 14:03:06,162 | INFO     | executing command: cat /etc/os-release
[2025-06-06 10:03:21] 2025-06-06 14:03:06,176 | INFO     | cat /etc/os-release:
[2025-06-06 10:03:21] NAME="CentOS Linux"
[2025-06-06 10:03:21] VERSION="7 (Core)"
[2025-06-06 10:03:21] ID="centos"
[2025-06-06 10:03:21] ID_LIKE="rhel fedora"
[2025-06-06 10:03:21] VERSION_ID="7"
[2025-06-06 10:03:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 10:03:21] ANSI_COLOR="0;31"
[2025-06-06 10:03:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 10:03:21] HOME_URL="https://www.centos.org/"
[2025-06-06 10:03:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 10:03:21] 
[2025-06-06 10:03:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 10:03:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 10:03:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 10:03:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 10:03:21] 
[2025-06-06 10:03:21] 2025-06-06 14:03:06,177 | INFO     | **************************************
[2025-06-06 10:03:21] 2025-06-06 14:03:06,679 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-06 10:03:21] 2025-06-06 14:03:06,695 | INFO     | sufficient remaining disk space (56079941632 B)
[2025-06-06 10:03:21] 2025-06-06 14:03:06,696 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 10:03:21] 2025-06-06 14:03:06,696 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 10:03:21] 2025-06-06 14:03:06,696 | INFO     | update_server=False
[2025-06-06 10:03:21] 2025-06-06 14:03:06,696 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 10:03:21] 2025-06-06 14:03:06,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 10:03:21] 2025-06-06 14:03:07,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 10:03:21] 2025-06-06 14:03:07,121 | INFO     | aborting loop
[2025-06-06 10:03:21] 2025-06-06 14:03:07,189 | INFO     | all payload control threads have been joined
[2025-06-06 10:03:21] 2025-06-06 14:03:07,391 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 10:03:21] 2025-06-06 14:03:07,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 10:03:21] 2025-06-06 14:03:07,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 10:03:21] 2025-06-06 14:03:07,393 | INFO     | all job control threads have been joined
[2025-06-06 10:03:21] 2025-06-06 14:03:07,700 | INFO     | [job] retrieve thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:07,719 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:07,794 | INFO     | all data control threads have been joined
[2025-06-06 10:03:21] 2025-06-06 14:03:08,041 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,107 | INFO     | [data] copytool_in thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,126 | INFO     | [job] job monitor thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,195 | INFO     | [payload] control thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,351 | INFO     | [payload] failed_post thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,398 | INFO     | [job] control thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,799 | INFO     | [data] control thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,804 | INFO     | [data] copytool_out thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:08,806 | INFO     | [job] validate thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:09,062 | INFO     | [payload] validate_post thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:09,107 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:09,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 10:03:21] 2025-06-06 14:03:09,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 10:03:21] 2025-06-06 14:03:10,495 | INFO     | [job] queue monitor thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:13,968 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 10:03:21] 2025-06-06 14:03:16,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109299930944)>', '<ExcThread(monitor, started 140108502116096)>']
[2025-06-06 10:03:21] 2025-06-06 14:03:16,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 10:03:21] 2025-06-06 14:03:16,433 | INFO     | [monitor] control thread has ended
[2025-06-06 10:03:21] 2025-06-06 14:03:21,048 | INFO     | all workflow threads have been joined
[2025-06-06 10:03:21] 2025-06-06 14:03:21,049 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 10:03:21] 2025-06-06 14:03:21,049 | INFO     | traces error code: 0
[2025-06-06 10:03:21] 2025-06-06 14:03:21,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 10:03:21] 2025-06-06 14:03:21,215 [wrapper] ==== pilot stdout END ====
[2025-06-06 10:03:21] 2025-06-06 14:03:21,218 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 10:03:21] 2025-06-06 14:03:21,220 [wrapper] pilotpid: 1325760
[2025-06-06 10:03:21] 2025-06-06 14:03:21,221 [wrapper] Pilot exit status: 0
[2025-06-06 10:03:21] 2025-06-06 14:03:21,230 [wrapper] pandaids: 6678391454 6678391454
[2025-06-06 10:03:21] 2025-06-06 14:03:21,270 [wrapper] cleanup supervisor_pilot 1497104 1325761
[2025-06-06 10:03:21] 2025-06-06 14:03:21,273 [wrapper] Test setup, not cleaning
[2025-06-06 10:03:21] 2025-06-06 14:03:21,275 [wrapper] apfmon messages muted
[2025-06-06 10:03:21] 2025-06-06 14:03:21,277 [wrapper] ==== wrapper stdout END ====
[2025-06-06 10:03:21] 2025-06-06 14:03:21,279 [wrapper] ==== wrapper stderr END ====
[2025-06-06 10:03:21]  *** Error codes and diagnostics ***
[2025-06-06 10:03:21]     "exeErrorCode": 0,
[2025-06-06 10:03:21]     "exeErrorDiag": "",
[2025-06-06 10:03:21]     "pilotErrorCode": 0,
[2025-06-06 10:03:21]     "pilotErrorDiag": "",
[2025-06-06 10:03:21]  *** Listing of results directory ***
[2025-06-06 10:03:21] total 596996
[2025-06-06 10:03:21] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:04 pilot3.tar.gz
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:29 queuedata.json
[2025-06-06 10:03:21] -rwx------. 1 boincer umatlas     37140 Jun  4 03:30 runpilot2-wrapper.sh
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas       100 Jun  4 06:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 10:03:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 06:50 run_atlas
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas       105 Jun  4 06:50 job.xml
[2025-06-06 10:03:21] -rw-r--r--. 3 boincer umatlas 214007082 Jun  4 06:50 EVNT.45006593._002193.pool.root.1
[2025-06-06 10:03:21] -rw-r--r--. 3 boincer umatlas 214007082 Jun  4 06:50 ATLAS.root_0
[2025-06-06 10:03:21] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:50 start_atlas.sh
[2025-06-06 10:03:21] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 06:50 shared
[2025-06-06 10:03:21] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 06:50 input.tar.gz
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas         0 Jun  4 06:50 boinc_lockfile
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas      2525 Jun  6 09:13 pandaJob.out
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas    985741 Jun  6 09:13 agis_schedconf.cvmfs.json
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas   1598969 Jun  6 09:13 agis_ddmendpoints.agis.ALL.json
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas      6842 Jun  6 09:55 init_data.xml
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas        97 Jun  6 10:02 pilot_heartbeat.json
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas 178143922 Jun  6 10:02 HITS.45006595._054816.pool.root.1
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas       529 Jun  6 10:02 boinc_task_state.xml
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas      1040 Jun  6 10:02 memory_monitor_summary.json
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas    354164 Jun  6 10:02 log.45006595._054816.job.log.tgz.1
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas      8192 Jun  6 10:02 boinc_mmap_file
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas        29 Jun  6 10:02 wrapper_checkpoint.txt
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas      7720 Jun  6 10:03 heartbeat.json
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas      4353 Jun  6 10:03 pilotlog.txt
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas    313218 Jun  6 10:03 log.45006595._054816.job.log.1
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas       357 Jun  6 10:03 output.list
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas       620 Jun  6 10:03 runtime_log
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas    686080 Jun  6 10:03 result.tar.gz
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas      8751 Jun  6 10:03 runtime_log.err
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas       779 Jun  6 10:03 lDhLDmOlxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBdnKDmTFEe1n.diag
[2025-06-06 10:03:21] -rw-r--r--. 1 boincer umatlas     23402 Jun  6 10:03 stderr.txt
[2025-06-06 10:03:21] HITS file was successfully produced:
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas 178143922 Jun  6 10:02 shared/HITS.pool.root.1
[2025-06-06 10:03:21]  *** Contents of shared directory: ***
[2025-06-06 10:03:21] total 384156
[2025-06-06 10:03:21] -rw-r--r--. 3 boincer umatlas 214007082 Jun  4 06:50 ATLAS.root_0
[2025-06-06 10:03:21] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:50 start_atlas.sh
[2025-06-06 10:03:21] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 06:50 input.tar.gz
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas 178143922 Jun  6 10:02 HITS.pool.root.1
[2025-06-06 10:03:21] -rw-------. 1 boincer umatlas    686080 Jun  6 10:03 result.tar.gz
10:03:22 (1320947): run_atlas exited; CPU time 31226.877094
10:03:22 (1320947): called boinc_finish(0)

</stderr_txt>
]]>

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