Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:24:26 (1011445): wrapper (7.7.26015): starting
14:24:26 (1011445): wrapper: running run_atlas (--nthreads 3)
[2025-06-06 14:24:26] Arguments: --nthreads 3
[2025-06-06 14:24:26] Threads: 3
[2025-06-06 14:24:26] Checking for CVMFS
[2025-06-06 14:24:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 14:25:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 14:25:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 14:25:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 14:25:21] 2.11.5.0 1011665 0 30948 146844 3 1 45488491 52428800 0 130560 0 0 0.000 1292 58 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-06 14:25:21] CVMFS is ok
[2025-06-06 14:25:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 14:25:21] Checking for apptainer binary...
[2025-06-06 14:25:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 14:25:21] Running /usr/bin/apptainer --version
[2025-06-06 14:25:21] apptainer version 1.3.5-1.el9
[2025-06-06 14:25:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 14:25:21] testio004
[2025-06-06 14:25:21] apptainer works
[2025-06-06 14:25:21] Set ATHENA_PROC_NUMBER=3
[2025-06-06 14:25:21] Set ATHENA_CORE_NUMBER=3
[2025-06-06 14:25:21] Starting ATLAS job with PandaID=6678247066
[2025-06-06 14:25:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 16:20:51]  *** The last 200 lines of the pilot log: ***
[2025-06-06 16:20:51] 2025-06-06 07:20:39,557 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6678247066/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,558 | INFO     | extracted standard info from prmon json
[2025-06-06 16:20:51] 2025-06-06 07:20:39,558 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 16:20:51] 2025-06-06 07:20:39,558 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 16:20:51] 2025-06-06 07:20:39,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 16:20:51] 2025-06-06 07:20:39,558 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 16:20:51] 2025-06-06 07:20:39,559 | INFO     | fitting pss+swap vs Time
[2025-06-06 16:20:51] 2025-06-06 07:20:39,559 | INFO     | sum of square deviations: 369281342.5
[2025-06-06 16:20:51] 2025-06-06 07:20:39,559 | INFO     | sum of deviations: 10724887721.500004
[2025-06-06 16:20:51] 2025-06-06 07:20:39,559 | INFO     | mean x: 1749191139.5
[2025-06-06 16:20:51] 2025-06-06 07:20:39,559 | INFO     | mean y: 2304430.9150943398
[2025-06-06 16:20:51] 2025-06-06 07:20:39,559 | INFO     | -- intersect: -50798741859.63816
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | intersect: -50798741859.63816
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | chi2: 4.201320760018401
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | sum of square deviations: 319447850.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | sum of deviations: 16538733579.999964
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | mean x: 1749190987.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | mean y: 2321522.3168316833
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | -- intersect: -90558324650.54106
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | intersect: -90558324650.54106
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | chi2: 3.5830464743483383
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | current chi2=3.5830464743483383 (change=14.716188574646102 %)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | right removable region: 100
[2025-06-06 16:20:51] 2025-06-06 07:20:39,560 | INFO     | sum of square deviations: 319447850.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | sum of deviations: -10555947642.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | mean x: 1749191292.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | mean y: 2369111.4653465347
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | -- intersect: 57803264294.18244
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | intersect: 57803264294.18244
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | chi2: 1.9462230514827104
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | current chi2=1.9462230514827104 (change=53.67592329526902 %)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | sum of square deviations: 274312120.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | sum of deviations: -24863442284.5
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | mean x: 1749191444.5
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | mean y: 2417467.5520833335
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | -- intersect: 158547801918.18057
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | intersect: 158547801918.18057
[2025-06-06 16:20:51] 2025-06-06 07:20:39,561 | INFO     | chi2: 0.9238014431803017
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | current chi2=0.9238014431803017 (change=52.53362956129243 %)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | sum of square deviations: 233641590.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | sum of deviations: -22569682495.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | mean x: 1749191597.0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | mean y: 2408576.4395604394
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | -- intersect: 168973604874.20486
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | intersect: 168973604874.20486
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | chi2: 0.8894410732094078
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | current chi2=0.8894410732094078 (change=3.7194540260300966 %)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | left removable region: 30
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | sum of square deviations: 106336877.5
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | sum of deviations: -3802782120.5000005
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | mean x: 1749191871.5
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | mean y: 2369228.757142857
[2025-06-06 16:20:51] 2025-06-06 07:20:39,562 | INFO     | -- intersect: 62556355490.61756
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | intersect: 62556355490.61756
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | chi2: 0.11843242924120273
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | -- intersect: 62556355490.61756
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | current memory leak: -35.76 B/s (using 70 data points, chi2=0.12)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | ..............................
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . Timing measurements:
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . get job = 0 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . initial setup = 9 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . payload setup = 4 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . stage-in = 0 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . payload execution = 6419 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . stage-out = 0 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | . log creation = 0 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,563 | INFO     | ..............................
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | 
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | job summary report
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | --------------------------------------------------
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | PanDA job id: 6678247066
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | task id: 45006595
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | errors: (none)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | pilot state: finished 
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | transexitcode: 0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,601 | INFO     | exeerrorcode: 0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | exeerrordiag: 
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | exitcode: 0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | exitmsg: OK
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | cpuconsumptiontime: 17069 s
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | nevents: 400
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | neventsw: 0
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | pid: 1022015
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | pgrp: 1022015
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | corecount: 3
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | event service: False
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | sizes: {0: 2397342, 3: 2397548, 11: 2397576, 6426: 2424483, 6427: 2424482, 6428: 2433479, 6430: 2433663, 6510: 2433833}
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | --------------------------------------------------
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | 
[2025-06-06 16:20:51] 2025-06-06 07:20:39,602 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | job 6678247066 has completed (purged errors)
[2025-06-06 16:20:51] 2025-06-06 07:20:39,613 | INFO     | overall cleanup function is called
[2025-06-06 16:20:51] 2025-06-06 07:20:40,619 | INFO     | --- collectZombieJob: --- 10, [1022015]
[2025-06-06 16:20:51] 2025-06-06 07:20:40,619 | INFO     | zombie collector waiting for pid 1022015
[2025-06-06 16:20:51] 2025-06-06 07:20:40,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 16:20:51] 2025-06-06 07:20:40,619 | INFO     | collected zombie processes
[2025-06-06 16:20:51] 2025-06-06 07:20:40,619 | INFO     | will attempt to kill all subprocesses of pid=1022015
[2025-06-06 16:20:51] 2025-06-06 07:20:40,648 | INFO     | process IDs to be killed: [1022015] (in reverse order)
[2025-06-06 16:20:51] 2025-06-06 07:20:40,668 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 16:20:51] 2025-06-06 07:20:40,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 16:20:51] 2025-06-06 07:20:40,669 | INFO     | did not find any defunct processes belonging to 1022015
[2025-06-06 16:20:51] 2025-06-06 07:20:40,670 | INFO     | did not find any defunct processes belonging to 1022015
[2025-06-06 16:20:51] 2025-06-06 07:20:40,670 | INFO     | ready for new job
[2025-06-06 16:20:51] 2025-06-06 07:20:40,670 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 16:20:51] 2025-06-06 07:20:40,671 | INFO     | **************************************
[2025-06-06 16:20:51] 2025-06-06 07:20:40,671 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 16:20:51] 2025-06-06 07:20:40,671 | INFO     | **************************************
[2025-06-06 16:20:51] 2025-06-06 07:20:40,671 | INFO     | 
[2025-06-06 16:20:51] 2025-06-06 07:20:40,671 | INFO     | architecture information:
[2025-06-06 16:20:51] 2025-06-06 07:20:40,671 | INFO     | executing command: cat /etc/os-release
[2025-06-06 16:20:51] 2025-06-06 07:20:40,678 | INFO     | cat /etc/os-release:
[2025-06-06 16:20:51] NAME="CentOS Linux"
[2025-06-06 16:20:51] VERSION="7 (Core)"
[2025-06-06 16:20:51] ID="centos"
[2025-06-06 16:20:51] ID_LIKE="rhel fedora"
[2025-06-06 16:20:51] VERSION_ID="7"
[2025-06-06 16:20:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 16:20:51] ANSI_COLOR="0;31"
[2025-06-06 16:20:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 16:20:51] HOME_URL="https://www.centos.org/"
[2025-06-06 16:20:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 16:20:51] 
[2025-06-06 16:20:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 16:20:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 16:20:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 16:20:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 16:20:51] 
[2025-06-06 16:20:51] 2025-06-06 07:20:40,678 | INFO     | **************************************
[2025-06-06 16:20:51] 2025-06-06 07:20:40,879 | INFO     | 6534s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-06 16:20:51] 2025-06-06 07:20:41,181 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-06 16:20:51] 2025-06-06 07:20:41,189 | INFO     | sufficient remaining disk space (323865280512 B)
[2025-06-06 16:20:51] 2025-06-06 07:20:41,189 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 16:20:51] 2025-06-06 07:20:41,189 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 16:20:51] 2025-06-06 07:20:41,189 | INFO     | update_server=False
[2025-06-06 16:20:51] 2025-06-06 07:20:41,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 16:20:51] 2025-06-06 07:20:41,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 16:20:51] 2025-06-06 07:20:41,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 16:20:51] 2025-06-06 07:20:41,310 | INFO     | aborting loop
[2025-06-06 16:20:51] 2025-06-06 07:20:41,681 | INFO     | all data control threads have been joined
[2025-06-06 16:20:51] 2025-06-06 07:20:41,884 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 16:20:51] 2025-06-06 07:20:41,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 16:20:51] 2025-06-06 07:20:41,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 16:20:51] 2025-06-06 07:20:42,012 | INFO     | all job control threads have been joined
[2025-06-06 16:20:51] 2025-06-06 07:20:42,061 | INFO     | all payload control threads have been joined
[2025-06-06 16:20:51] 2025-06-06 07:20:42,194 | INFO     | [job] queue monitor thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,194 | INFO     | [job] retrieve thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,315 | INFO     | [job] job monitor thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 16:20:51] 2025-06-06 07:20:42,386 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 16:20:51] 2025-06-06 07:20:42,686 | INFO     | [data] control thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,770 | INFO     | [job] validate thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,810 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:42,928 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:43,017 | INFO     | [job] control thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:43,066 | INFO     | [payload] control thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:43,089 | INFO     | [payload] failed_post thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:43,199 | INFO     | [data] copytool_in thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:43,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:43,645 | INFO     | [payload] validate_post thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:44,595 | INFO     | [data] copytool_out thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:46,344 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 16:20:51] 2025-06-06 07:20:46,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677123811136)>', '<ExcThread(monitor, started 140676402501376)>']
[2025-06-06 16:20:51] 2025-06-06 07:20:46,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 16:20:51] 2025-06-06 07:20:46,906 | INFO     | [monitor] control thread has ended
[2025-06-06 16:20:51] 2025-06-06 07:20:51,804 | INFO     | all workflow threads have been joined
[2025-06-06 16:20:51] 2025-06-06 07:20:51,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 16:20:51] 2025-06-06 07:20:51,804 | INFO     | traces error code: 0
[2025-06-06 16:20:51] 2025-06-06 07:20:51,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 16:20:51] 2025-06-06 07:20:51,861 [wrapper] ==== pilot stdout END ====
[2025-06-06 16:20:51] 2025-06-06 07:20:51,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 16:20:51] 2025-06-06 07:20:51,865 [wrapper] pilotpid: 1015668
[2025-06-06 16:20:51] 2025-06-06 07:20:51,866 [wrapper] Pilot exit status: 0
[2025-06-06 16:20:51] 2025-06-06 07:20:51,872 [wrapper] pandaids: 6678247066
[2025-06-06 16:20:51] 2025-06-06 07:20:51,884 [wrapper] cleanup supervisor_pilot 1035807 1015669
[2025-06-06 16:20:51] 2025-06-06 07:20:51,887 [wrapper] Test setup, not cleaning
[2025-06-06 16:20:51] 2025-06-06 07:20:51,889 [wrapper] apfmon messages muted
[2025-06-06 16:20:51] 2025-06-06 07:20:51,890 [wrapper] ==== wrapper stdout END ====
[2025-06-06 16:20:51] 2025-06-06 07:20:51,892 [wrapper] ==== wrapper stderr END ====
[2025-06-06 16:20:51]  *** Error codes and diagnostics ***
[2025-06-06 16:20:51]     "exeErrorCode": 0,
[2025-06-06 16:20:51]     "exeErrorDiag": "",
[2025-06-06 16:20:51]     "pilotErrorCode": 0,
[2025-06-06 16:20:51]     "pilotErrorDiag": "",
[2025-06-06 16:20:51]  *** Listing of results directory ***
[2025-06-06 16:20:51] total 394164
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:59 pilot3.tar.gz
[2025-06-06 16:20:51] -rwx------. 1 boinc boinc     37140 Jun  4 11:13 runpilot2-wrapper.sh
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc      5111 Jun  4 11:13 queuedata.json
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc       100 Jun  6 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 16:20:51] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 14:24 run_atlas
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc       105 Jun  6 14:24 job.xml
[2025-06-06 16:20:51] -rw-r--r--. 2 boinc boinc     15093 Jun  6 14:24 start_atlas.sh
[2025-06-06 16:20:51] drwxrwx--x. 2 boinc boinc        68 Jun  6 14:24 shared
[2025-06-06 16:20:51] -rw-r--r--. 2 boinc boinc    508877 Jun  6 14:24 input.tar.gz
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc      6507 Jun  6 14:24 init_data.xml
[2025-06-06 16:20:51] -rw-r--r--. 2 boinc boinc 217502106 Jun  6 14:24 EVNT.45006593._002020.pool.root.1
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc         0 Jun  6 14:24 boinc_lockfile
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc      2525 Jun  6 14:25 pandaJob.out
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc    988109 Jun  6 14:31 agis_schedconf.cvmfs.json
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc   1598969 Jun  6 14:31 agis_ddmendpoints.agis.ALL.json
[2025-06-06 16:20:51] drwx------. 4 boinc boinc      4096 Jun  6 14:31 pilot3
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc 180582030 Jun  6 16:18 HITS.45006595._050394.pool.root.1
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc       529 Jun  6 16:19 boinc_task_state.xml
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc      1009 Jun  6 16:19 memory_monitor_summary.json
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc    252630 Jun  6 16:19 log.45006595._050394.job.log.tgz.1
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc        95 Jun  6 16:20 pilot_heartbeat.json
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc      8192 Jun  6 16:20 boinc_mmap_file
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc        27 Jun  6 16:20 wrapper_checkpoint.txt
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc      7662 Jun  6 16:20 heartbeat.json
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc      4469 Jun  6 16:20 pilotlog.txt
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc    605065 Jun  6 16:20 log.45006595._050394.job.log.1
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc       357 Jun  6 16:20 output.list
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc       620 Jun  6 16:20 runtime_log
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc    880640 Jun  6 16:20 result.tar.gz
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc      8617 Jun  6 16:20 runtime_log.err
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc       643 Jun  6 16:20 BcoNDmWosg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSqmKDmofETzm.diag
[2025-06-06 16:20:51] -rw-r--r--. 1 boinc boinc     20521 Jun  6 16:20 stderr.txt
[2025-06-06 16:20:51] HITS file was successfully produced:
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc 180582030 Jun  6 16:18 shared/HITS.pool.root.1
[2025-06-06 16:20:51]  *** Contents of shared directory: ***
[2025-06-06 16:20:51] total 390136
[2025-06-06 16:20:51] -rw-r--r--. 2 boinc boinc     15093 Jun  6 14:24 start_atlas.sh
[2025-06-06 16:20:51] -rw-r--r--. 2 boinc boinc    508877 Jun  6 14:24 input.tar.gz
[2025-06-06 16:20:51] -rw-r--r--. 2 boinc boinc 217502106 Jun  6 14:24 ATLAS.root_0
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc 180582030 Jun  6 16:18 HITS.pool.root.1
[2025-06-06 16:20:51] -rw-------. 1 boinc boinc    880640 Jun  6 16:20 result.tar.gz
16:20:53 (1011445): run_atlas exited; CPU time 17095.066899
16:20:53 (1011445): called boinc_finish(0)

</stderr_txt>
]]>

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