Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:34:41 (31528): wrapper (7.7.26015): starting
22:34:41 (31528): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:34:41] Arguments: --nthreads 8
[2025-06-04 22:34:41] Threads: 8
[2025-06-04 22:34:41] Checking for CVMFS
[2025-06-04 22:34:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:34:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:34:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:34:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:34:43] 2.11.2.0 29611 33682 96464 146793 3 158 17675065 25165824 3182 130560 0 17139968 99.826 19488798 2210 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:34:43] CVMFS is ok
[2025-06-04 22:34:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:34:43] Checking for apptainer binary...
[2025-06-04 22:34:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:34:43] Running /usr/bin/apptainer --version
[2025-06-04 22:34:43] apptainer version 1.3.2-1.el7
[2025-06-04 22:34:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:34:57] cg-vwn406.simple-grid.lan
[2025-06-04 22:34:57] apptainer works
[2025-06-04 22:34:57] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:34:57] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:34:57] Starting ATLAS job with PandaID=6678313658
[2025-06-04 22:34:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:30:05]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:30:05] 2025-06-05 00:28:55,815 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6678313658/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,816 | INFO     | extracted standard info from prmon json
[2025-06-05 03:30:05] 2025-06-05 00:28:55,816 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:30:05] 2025-06-05 00:28:55,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:30:05] 2025-06-05 00:28:55,817 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:30:05] 2025-06-05 00:28:55,817 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:30:05] 2025-06-05 00:28:55,821 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:30:05] 2025-06-05 00:28:55,822 | INFO     | sum of square deviations: 3627000098.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,824 | INFO     | sum of deviations: -22345073968.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,824 | INFO     | mean x: 1749076277.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,824 | INFO     | mean y: 2493492.387665198
[2025-06-05 03:30:05] 2025-06-05 00:28:55,824 | INFO     | -- intersect: 10778131134.854322
[2025-06-05 03:30:05] 2025-06-05 00:28:55,824 | INFO     | intersect: 10778131134.854322
[2025-06-05 03:30:05] 2025-06-05 00:28:55,825 | INFO     | chi2: 2.669886788624391
[2025-06-05 03:30:05] 2025-06-05 00:28:55,825 | INFO     | sum of square deviations: 3392567795.5
[2025-06-05 03:30:05] 2025-06-05 00:28:55,827 | INFO     | sum of deviations: -6270216047.000004
[2025-06-05 03:30:05] 2025-06-05 00:28:55,827 | INFO     | mean x: 1749076124.5
[2025-06-05 03:30:05] 2025-06-05 00:28:55,827 | INFO     | mean y: 2503770.171171171
[2025-06-05 03:30:05] 2025-06-05 00:28:55,827 | INFO     | -- intersect: 3235183511.4018507
[2025-06-05 03:30:05] 2025-06-05 00:28:55,827 | INFO     | intersect: 3235183511.4018507
[2025-06-05 03:30:05] 2025-06-05 00:28:55,828 | INFO     | chi2: 1.8480661313766542
[2025-06-05 03:30:05] 2025-06-05 00:28:55,828 | INFO     | current chi2=1.8480661313766542 (change=30.78110505468902 %)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,828 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,830 | INFO     | sum of deviations: -5843696360.999992
[2025-06-05 03:30:05] 2025-06-05 00:28:55,830 | INFO     | mean x: 1749075972.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,830 | INFO     | mean y: 2504060.4838709678
[2025-06-05 03:30:05] 2025-06-05 00:28:55,830 | INFO     | -- intersect: 3228381869.3487024
[2025-06-05 03:30:05] 2025-06-05 00:28:55,831 | INFO     | intersect: 3228381869.3487024
[2025-06-05 03:30:05] 2025-06-05 00:28:55,831 | INFO     | chi2: 1.848089749992822
[2025-06-05 03:30:05] 2025-06-05 00:28:55,831 | INFO     | current chi2=1.848089749992822 (change=-0.0012780179110872558 %)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,831 | INFO     | right removable region: 216
[2025-06-05 03:30:05] 2025-06-05 00:28:55,832 | INFO     | sum of square deviations: 3392567795.5
[2025-06-05 03:30:05] 2025-06-05 00:28:55,833 | INFO     | sum of deviations: -61519624870.5
[2025-06-05 03:30:05] 2025-06-05 00:28:55,834 | INFO     | mean x: 1749076429.5
[2025-06-05 03:30:05] 2025-06-05 00:28:55,834 | INFO     | mean y: 2518762.9234234234
[2025-06-05 03:30:05] 2025-06-05 00:28:55,834 | INFO     | -- intersect: 31719652302.716095
[2025-06-05 03:30:05] 2025-06-05 00:28:55,834 | INFO     | intersect: 31719652302.716095
[2025-06-05 03:30:05] 2025-06-05 00:28:55,834 | INFO     | chi2: 1.03837641929348
[2025-06-05 03:30:05] 2025-06-05 00:28:55,835 | INFO     | current chi2=1.03837641929348 (change=61.1078483283374 %)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,835 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,837 | INFO     | sum of deviations: -57884475996.000046
[2025-06-05 03:30:05] 2025-06-05 00:28:55,837 | INFO     | mean x: 1749076582.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,837 | INFO     | mean y: 2516260.1105990782
[2025-06-05 03:30:05] 2025-06-05 00:28:55,837 | INFO     | -- intersect: 31956317446.97264
[2025-06-05 03:30:05] 2025-06-05 00:28:55,837 | INFO     | intersect: 31956317446.97264
[2025-06-05 03:30:05] 2025-06-05 00:28:55,838 | INFO     | chi2: 1.0292811456278737
[2025-06-05 03:30:05] 2025-06-05 00:28:55,838 | INFO     | current chi2=1.0292811456278737 (change=0.8759129634121269 %)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,838 | INFO     | left removable region: 20
[2025-06-05 03:30:05] 2025-06-05 00:28:55,838 | INFO     | sum of square deviations: 2334722845.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,840 | INFO     | sum of deviations: -26767785394.0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,840 | INFO     | mean x: 1749076551.5
[2025-06-05 03:30:05] 2025-06-05 00:28:55,840 | INFO     | mean y: 2517579.551020408
[2025-06-05 03:30:05] 2025-06-05 00:28:55,840 | INFO     | -- intersect: 20055821066.299397
[2025-06-05 03:30:05] 2025-06-05 00:28:55,840 | INFO     | intersect: 20055821066.299397
[2025-06-05 03:30:05] 2025-06-05 00:28:55,840 | INFO     | chi2: 0.14858484145890047
[2025-06-05 03:30:05] 2025-06-05 00:28:55,841 | INFO     | -- intersect: 20055821066.299397
[2025-06-05 03:30:05] 2025-06-05 00:28:55,841 | INFO     | current memory leak: -11.47 B/s (using 196 data points, chi2=0.15)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | ..............................
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . Timing measurements:
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . get job = 0 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . initial setup = 3 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . payload setup = 14 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . stage-in = 0 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . payload execution = 13868 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . stage-out = 3 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | . log creation = 1 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,842 | INFO     | ..............................
[2025-06-05 03:30:05] 2025-06-05 00:28:55,964 | INFO     | 
[2025-06-05 03:30:05] 2025-06-05 00:28:55,964 | INFO     | job summary report
[2025-06-05 03:30:05] 2025-06-05 00:28:55,964 | INFO     | --------------------------------------------------
[2025-06-05 03:30:05] 2025-06-05 00:28:55,964 | INFO     | PanDA job id: 6678313658
[2025-06-05 03:30:05] 2025-06-05 00:28:55,964 | INFO     | task id: 45006595
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | errors: (none)
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | pilot state: finished 
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | transexitcode: 0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | exeerrorcode: 0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | exeerrordiag: 
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | exitcode: 0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | exitmsg: OK
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | cpuconsumptiontime: 51818 s
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | nevents: 400
[2025-06-05 03:30:05] 2025-06-05 00:28:55,965 | INFO     | neventsw: 0
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | pid: 15699
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | pgrp: 15699
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | corecount: 8
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | event service: False
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | sizes: {0: 2397171, 1: 2397370, 10: 2397576, 12: 2397604, 13887: 2427403, 13891: 2436344, 13894: 2436528, 13988: 2436698}
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | --------------------------------------------------
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | 
[2025-06-05 03:30:05] 2025-06-05 00:28:55,966 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-05 03:30:05] 2025-06-05 00:28:56,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:30:05] 2025-06-05 00:28:56,220 | INFO     | job 6678313658 has completed (purged errors)
[2025-06-05 03:30:05] 2025-06-05 00:28:56,220 | INFO     | overall cleanup function is called
[2025-06-05 03:30:05] 2025-06-05 00:28:57,229 | INFO     | --- collectZombieJob: --- 10, [15699]
[2025-06-05 03:30:05] 2025-06-05 00:28:57,230 | INFO     | zombie collector waiting for pid 15699
[2025-06-05 03:30:05] 2025-06-05 00:28:57,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:30:05] 2025-06-05 00:28:57,230 | INFO     | collected zombie processes
[2025-06-05 03:30:05] 2025-06-05 00:28:57,230 | INFO     | will attempt to kill all subprocesses of pid=15699
[2025-06-05 03:30:05] 2025-06-05 00:28:57,357 | INFO     | process IDs to be killed: [15699] (in reverse order)
[2025-06-05 03:30:05] 2025-06-05 00:28:57,645 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:30:05] 2025-06-05 00:28:57,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:30:05] 2025-06-05 00:28:57,649 | INFO     | did not find any defunct processes belonging to 15699
[2025-06-05 03:30:05] 2025-06-05 00:28:57,655 | INFO     | did not find any defunct processes belonging to 15699
[2025-06-05 03:30:05] 2025-06-05 00:28:57,656 | INFO     | ready for new job
[2025-06-05 03:30:05] 2025-06-05 00:28:57,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:30:05] 2025-06-05 00:28:57,662 | INFO     | **************************************
[2025-06-05 03:30:05] 2025-06-05 00:28:57,663 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:30:05] 2025-06-05 00:28:57,663 | INFO     | **************************************
[2025-06-05 03:30:05] 2025-06-05 00:28:57,663 | INFO     | 
[2025-06-05 03:30:05] 2025-06-05 00:28:57,664 | INFO     | pilot is running in a VM
[2025-06-05 03:30:05] 2025-06-05 00:28:57,664 | INFO     | architecture information:
[2025-06-05 03:30:05] 2025-06-05 00:28:57,664 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:30:05] 2025-06-05 00:28:57,690 | INFO     | cat /etc/os-release:
[2025-06-05 03:30:05] NAME="CentOS Linux"
[2025-06-05 03:30:05] VERSION="7 (Core)"
[2025-06-05 03:30:05] ID="centos"
[2025-06-05 03:30:05] ID_LIKE="rhel fedora"
[2025-06-05 03:30:05] VERSION_ID="7"
[2025-06-05 03:30:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:30:05] ANSI_COLOR="0;31"
[2025-06-05 03:30:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:30:05] HOME_URL="https://www.centos.org/"
[2025-06-05 03:30:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:30:05] 
[2025-06-05 03:30:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:30:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:30:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:30:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:30:05] 
[2025-06-05 03:30:05] 2025-06-05 00:28:57,690 | INFO     | **************************************
[2025-06-05 03:30:05] 2025-06-05 00:28:58,195 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-05 03:30:05] 2025-06-05 00:28:58,503 | INFO     | sufficient remaining disk space (496771268608 B)
[2025-06-05 03:30:05] 2025-06-05 00:28:58,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:30:05] 2025-06-05 00:28:58,504 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:30:05] 2025-06-05 00:28:58,504 | INFO     | update_server=False
[2025-06-05 03:30:05] 2025-06-05 00:28:58,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:30:05] 2025-06-05 00:28:58,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:30:05] 2025-06-05 00:28:58,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:30:05] 2025-06-05 00:28:58,563 | INFO     | aborting loop
[2025-06-05 03:30:05] 2025-06-05 00:28:58,790 | INFO     | all data control threads have been joined
[2025-06-05 03:30:05] 2025-06-05 00:28:58,883 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:30:05] 2025-06-05 00:28:58,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:30:05] 2025-06-05 00:28:58,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:30:05] 2025-06-05 00:28:58,887 | INFO     | all job control threads have been joined
[2025-06-05 03:30:05] 2025-06-05 00:28:59,510 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:28:59,569 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:28:59,634 | INFO     | all payload control threads have been joined
[2025-06-05 03:30:05] 2025-06-05 00:28:59,664 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:28:59,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:30:05] 2025-06-05 00:28:59,797 | INFO     | [data] control thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:28:59,894 | INFO     | [job] control thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,164 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,184 | INFO     | [job] validate thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,341 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,537 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,564 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,640 | INFO     | [payload] control thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,683 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:00,984 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:30:05] 2025-06-05 00:29:01,780 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:01,990 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:02,513 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:30:05] 2025-06-05 00:29:03,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443937941312)>', '<ExcThread(monitor, started 140443199198976)>']
[2025-06-05 03:30:05] 2025-06-05 00:29:04,917 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:30:05] 2025-06-05 00:29:04,918 | INFO     | [monitor] control thread has ended
[2025-06-05 03:30:05] 2025-06-05 00:29:09,014 | INFO     | all workflow threads have been joined
[2025-06-05 03:30:05] 2025-06-05 00:29:09,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:30:05] 2025-06-05 00:29:09,015 | INFO     | traces error code: 0
[2025-06-05 03:30:05] 2025-06-05 00:29:09,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:30:05] 2025-06-05 00:29:09,459 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:30:05] 2025-06-05 00:29:09,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:30:05] 2025-06-05 00:29:09,553 [wrapper] pilotpid: 7890
[2025-06-05 03:30:05] 2025-06-05 00:29:09,573 [wrapper] Pilot exit status: 0
[2025-06-05 03:30:05] 2025-06-05 00:29:10,110 [wrapper] pandaids: 6678313658
[2025-06-05 03:30:05] 2025-06-05 00:29:11,057 [wrapper] cleanup supervisor_pilot 31945 7891
[2025-06-05 03:30:05] 2025-06-05 00:29:11,162 [wrapper] Test setup, not cleaning
[2025-06-05 03:30:05] 2025-06-05 00:29:11,284 [wrapper] apfmon messages muted
[2025-06-05 03:30:05] 2025-06-05 00:29:11,426 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:30:05] 2025-06-05 00:29:11,492 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:30:05]  *** Error codes and diagnostics ***
[2025-06-05 03:30:05]     "exeErrorCode": 0,
[2025-06-05 03:30:05]     "exeErrorDiag": "",
[2025-06-05 03:30:05]     "pilotErrorCode": 0,
[2025-06-05 03:30:05]     "pilotErrorDiag": "",
[2025-06-05 03:30:05]  *** Listing of results directory ***
[2025-06-05 03:30:05] total 398476
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:29 queuedata.json
[2025-06-05 03:30:05] -rwx------. 1 boinc boinc     37140 Jun  4 06:29 runpilot2-wrapper.sh
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:30:05] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:34 run_atlas
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:34 job.xml
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc      6392 Jun  4 22:34 init_data.xml
[2025-06-05 03:30:05] -rw-r--r--. 2 boinc boinc 218917611 Jun  4 22:34 EVNT.45006593._002108.pool.root.1
[2025-06-05 03:30:05] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:34 start_atlas.sh
[2025-06-05 03:30:05] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:34 shared
[2025-06-05 03:30:05] -rw-r--r--. 2 boinc boinc    508876 Jun  4 22:34 input.tar.gz
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:34 boinc_lockfile
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc      2525 Jun  4 22:34 pandaJob.out
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc    987032 Jun  4 22:35 agis_schedconf.cvmfs.json
[2025-06-05 03:30:05] drwx------. 4 boinc boinc      4096 Jun  4 22:35 pilot3
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc 182114523 Jun  5 02:25 HITS.45006595._052638.pool.root.1
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc       531 Jun  5 02:26 boinc_task_state.xml
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc      1020 Jun  5 02:27 memory_monitor_summary.json
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc   1598969 Jun  5 02:27 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc    383654 Jun  5 02:27 log.45006595._052638.job.log.tgz.1
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc        95 Jun  5 02:28 pilot_heartbeat.json
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc      7690 Jun  5 02:28 heartbeat.json
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc      4416 Jun  5 02:29 pilotlog.txt
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc   1210082 Jun  5 02:29 log.45006595._052638.job.log.1
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc       357 Jun  5 02:29 output.list
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc       620 Jun  5 02:29 runtime_log
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc   1617920 Jun  5 02:29 result.tar.gz
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc      8659 Jun  5 02:29 runtime_log.err
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc       657 Jun  5 02:29 ghHLDm2vug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrFnKDm3deZMm.diag
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc      8192 Jun  5 03:30 boinc_mmap_file
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc        28 Jun  5 03:30 wrapper_checkpoint.txt
[2025-06-05 03:30:05] -rw-r--r--. 1 boinc boinc     20485 Jun  5 03:30 stderr.txt
[2025-06-05 03:30:05] HITS file was successfully produced:
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc 182114523 Jun  5 02:25 shared/HITS.pool.root.1
[2025-06-05 03:30:05]  *** Contents of shared directory: ***
[2025-06-05 03:30:05] total 393732
[2025-06-05 03:30:05] -rw-r--r--. 2 boinc boinc 218917611 Jun  4 22:34 ATLAS.root_0
[2025-06-05 03:30:05] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:34 start_atlas.sh
[2025-06-05 03:30:05] -rw-r--r--. 2 boinc boinc    508876 Jun  4 22:34 input.tar.gz
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc 182114523 Jun  5 02:25 HITS.pool.root.1
[2025-06-05 03:30:05] -rw-------. 1 boinc boinc   1617920 Jun  5 02:29 result.tar.gz
03:30:07 (31528): run_atlas exited; CPU time 51991.621417
03:30:07 (31528): called boinc_finish(0)

</stderr_txt>
]]>

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