Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:49:15 (27857): wrapper (7.7.26015): starting
19:49:15 (27857): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:49:15] Arguments: --nthreads 8
[2025-06-04 19:49:15] Threads: 8
[2025-06-04 19:49:15] Checking for CVMFS
[2025-06-04 19:49:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:49:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:49:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:49:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:49:18] 2.11.2.0 408 33529 98000 146789 3 59 12913664 25165824 3136 130560 0 17023113 99.794 19377445 2059 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 19:49:18] CVMFS is ok
[2025-06-04 19:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:49:18] Checking for apptainer binary...
[2025-06-04 19:49:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:49:18] Running /usr/bin/apptainer --version
[2025-06-04 19:49:18] apptainer version 1.3.2-1.el7
[2025-06-04 19:49:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:49:33] cg-vwn429.simple-grid.lan
[2025-06-04 19:49:33] apptainer works
[2025-06-04 19:49:33] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:49:33] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:49:33] Starting ATLAS job with PandaID=6678313230
[2025-06-04 19:49:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:55:27]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:55:27] 2025-06-04 21:49:02,575 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:55:27] 2025-06-04 21:49:02,575 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:55:27] 2025-06-04 21:49:02,575 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:55:27] 2025-06-04 21:49:02,575 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:55:27] 2025-06-04 21:49:02,581 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:55:27] 2025-06-04 21:49:02,582 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,584 | INFO     | sum of deviations: 129425292710.00014
[2025-06-04 23:55:27] 2025-06-04 21:49:02,584 | INFO     | mean x: 1749066847.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,584 | INFO     | mean y: 2386281.798206278
[2025-06-04 23:55:27] 2025-06-04 21:49:02,584 | INFO     | -- intersect: -65830255631.58138
[2025-06-04 23:55:27] 2025-06-04 21:49:02,584 | INFO     | intersect: -65830255631.58138
[2025-06-04 23:55:27] 2025-06-04 21:49:02,585 | INFO     | chi2: 7.983664388070875
[2025-06-04 23:55:27] 2025-06-04 21:49:02,585 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,587 | INFO     | sum of deviations: 140795010852.00003
[2025-06-04 23:55:27] 2025-06-04 21:49:02,587 | INFO     | mean x: 1749066694.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,587 | INFO     | mean y: 2393768.1926605506
[2025-06-04 23:55:27] 2025-06-04 21:49:02,588 | INFO     | -- intersect: -76655144667.99661
[2025-06-04 23:55:27] 2025-06-04 21:49:02,588 | INFO     | intersect: -76655144667.99661
[2025-06-04 23:55:27] 2025-06-04 21:49:02,588 | INFO     | chi2: 7.275068106193752
[2025-06-04 23:55:27] 2025-06-04 21:49:02,588 | INFO     | current chi2=7.275068106193752 (change=8.875577021197211 %)
[2025-06-04 23:55:27] 2025-06-04 21:49:02,588 | INFO     | right removable region: 217
[2025-06-04 23:55:27] 2025-06-04 21:49:02,589 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,591 | INFO     | sum of deviations: 53121482017.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,591 | INFO     | mean x: 1749066999.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,591 | INFO     | mean y: 2437701.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,591 | INFO     | -- intersect: -28920197660.365
[2025-06-04 23:55:27] 2025-06-04 21:49:02,591 | INFO     | intersect: -28920197660.365
[2025-06-04 23:55:27] 2025-06-04 21:49:02,592 | INFO     | chi2: 2.9961470290360612
[2025-06-04 23:55:27] 2025-06-04 21:49:02,592 | INFO     | current chi2=2.9961470290360612 (change=62.47153082345396 %)
[2025-06-04 23:55:27] 2025-06-04 21:49:02,592 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,594 | INFO     | sum of deviations: 3157178952.000002
[2025-06-04 23:55:27] 2025-06-04 21:49:02,594 | INFO     | mean x: 1749067152.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,594 | INFO     | mean y: 2472856.2112676054
[2025-06-04 23:55:27] 2025-06-04 21:49:02,595 | INFO     | -- intersect: -1840411234.2904756
[2025-06-04 23:55:27] 2025-06-04 21:49:02,595 | INFO     | intersect: -1840411234.2904756
[2025-06-04 23:55:27] 2025-06-04 21:49:02,595 | INFO     | chi2: 0.8961466495250071
[2025-06-04 23:55:27] 2025-06-04 21:49:02,595 | INFO     | current chi2=0.8961466495250071 (change=70.09003093505325 %)
[2025-06-04 23:55:27] 2025-06-04 21:49:02,596 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,597 | INFO     | sum of deviations: -6359704206.000001
[2025-06-04 23:55:27] 2025-06-04 21:49:02,598 | INFO     | mean x: 1749067304.5
[2025-06-04 23:55:27] 2025-06-04 21:49:02,598 | INFO     | mean y: 2479831.826923077
[2025-06-04 23:55:27] 2025-06-04 21:49:02,598 | INFO     | -- intersect: 3988918142.3157496
[2025-06-04 23:55:27] 2025-06-04 21:49:02,598 | INFO     | intersect: 3988918142.3157496
[2025-06-04 23:55:27] 2025-06-04 21:49:02,598 | INFO     | chi2: 0.7937081990887362
[2025-06-04 23:55:27] 2025-06-04 21:49:02,599 | INFO     | current chi2=0.7937081990887362 (change=11.430991846096536 %)
[2025-06-04 23:55:27] 2025-06-04 21:49:02,599 | INFO     | left removable region: 30
[2025-06-04 23:55:27] 2025-06-04 21:49:02,599 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,601 | INFO     | sum of deviations: 4471039713.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,601 | INFO     | mean x: 1749067579.0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,601 | INFO     | mean y: 2492434.973262032
[2025-06-04 23:55:27] 2025-06-04 21:49:02,601 | INFO     | -- intersect: -3854282474.259296
[2025-06-04 23:55:27] 2025-06-04 21:49:02,601 | INFO     | intersect: -3854282474.259296
[2025-06-04 23:55:27] 2025-06-04 21:49:02,602 | INFO     | chi2: 0.00022799137360008298
[2025-06-04 23:55:27] 2025-06-04 21:49:02,602 | INFO     | -- intersect: -3854282474.259296
[2025-06-04 23:55:27] 2025-06-04 21:49:02,602 | INFO     | current memory leak: 2.21 B/s (using 187 data points, chi2=0.00)
[2025-06-04 23:55:27] 2025-06-04 21:49:02,603 | INFO     | ..............................
[2025-06-04 23:55:27] 2025-06-04 21:49:02,603 | INFO     | . Timing measurements:
[2025-06-04 23:55:27] 2025-06-04 21:49:02,603 | INFO     | . get job = 0 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,603 | INFO     | . initial setup = 6 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,603 | INFO     | . payload setup = 159 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,603 | INFO     | . stage-in = 0 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,604 | INFO     | . payload execution = 13725 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,604 | INFO     | . stage-out = 4 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,604 | INFO     | . log creation = 1 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,604 | INFO     | ..............................
[2025-06-04 23:55:27] 2025-06-04 21:49:02,741 | INFO     | 
[2025-06-04 23:55:27] 2025-06-04 21:49:02,741 | INFO     | job summary report
[2025-06-04 23:55:27] 2025-06-04 21:49:02,741 | INFO     | --------------------------------------------------
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | PanDA job id: 6678313230
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | task id: 45006595
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | errors: (none)
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | pilot state: finished 
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | transexitcode: 0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | exeerrorcode: 0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | exeerrordiag: 
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | exitcode: 0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | exitmsg: OK
[2025-06-04 23:55:27] 2025-06-04 21:49:02,742 | INFO     | cpuconsumptiontime: 50665 s
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | nevents: 400
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | neventsw: 0
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | pid: 11940
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | pgrp: 11940
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | corecount: 8
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | event service: False
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | sizes: {0: 2397229, 1: 2397371, 12: 2397371, 23: 2397399, 33: 2397427, 44: 2397483, 55: 2397639, 65: 2397667, 76: 2397695, 87: 2397751, 88: 2397985, 98: 2398293, 1
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | --------------------------------------------------
[2025-06-04 23:55:27] 2025-06-04 21:49:02,743 | INFO     | 
[2025-06-04 23:55:27] 2025-06-04 21:49:02,744 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 23:55:27] 2025-06-04 21:49:03,166 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,168 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:55:27] 2025-06-04 21:49:03,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:55:27] 2025-06-04 21:49:03,169 | INFO     | job 6678313230 has completed (purged errors)
[2025-06-04 23:55:27] 2025-06-04 21:49:03,169 | INFO     | overall cleanup function is called
[2025-06-04 23:55:27] 2025-06-04 21:49:04,178 | INFO     | --- collectZombieJob: --- 10, [11940]
[2025-06-04 23:55:27] 2025-06-04 21:49:04,178 | INFO     | zombie collector waiting for pid 11940
[2025-06-04 23:55:27] 2025-06-04 21:49:04,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:55:27] 2025-06-04 21:49:04,179 | INFO     | collected zombie processes
[2025-06-04 23:55:27] 2025-06-04 21:49:04,179 | INFO     | will attempt to kill all subprocesses of pid=11940
[2025-06-04 23:55:27] 2025-06-04 21:49:04,334 | INFO     | process IDs to be killed: [11940] (in reverse order)
[2025-06-04 23:55:27] 2025-06-04 21:49:04,710 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:55:27] 2025-06-04 21:49:04,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:55:27] 2025-06-04 21:49:04,714 | INFO     | did not find any defunct processes belonging to 11940
[2025-06-04 23:55:27] 2025-06-04 21:49:04,717 | INFO     | did not find any defunct processes belonging to 11940
[2025-06-04 23:55:27] 2025-06-04 21:49:04,718 | INFO     | ready for new job
[2025-06-04 23:55:27] 2025-06-04 21:49:04,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:55:27] 2025-06-04 21:49:04,730 | INFO     | **************************************
[2025-06-04 23:55:27] 2025-06-04 21:49:04,731 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:55:27] 2025-06-04 21:49:04,731 | INFO     | **************************************
[2025-06-04 23:55:27] 2025-06-04 21:49:04,731 | INFO     | 
[2025-06-04 23:55:27] 2025-06-04 21:49:04,731 | INFO     | pilot is running in a VM
[2025-06-04 23:55:27] 2025-06-04 21:49:04,732 | INFO     | architecture information:
[2025-06-04 23:55:27] 2025-06-04 21:49:04,743 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:55:27] 2025-06-04 21:49:04,914 | INFO     | cat /etc/os-release:
[2025-06-04 23:55:27] NAME="CentOS Linux"
[2025-06-04 23:55:27] VERSION="7 (Core)"
[2025-06-04 23:55:27] ID="centos"
[2025-06-04 23:55:27] ID_LIKE="rhel fedora"
[2025-06-04 23:55:27] VERSION_ID="7"
[2025-06-04 23:55:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:55:27] ANSI_COLOR="0;31"
[2025-06-04 23:55:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:55:27] HOME_URL="https://www.centos.org/"
[2025-06-04 23:55:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:55:27] 
[2025-06-04 23:55:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:55:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:55:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:55:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:55:27] 
[2025-06-04 23:55:27] 2025-06-04 21:49:04,915 | INFO     | **************************************
[2025-06-04 23:55:27] 2025-06-04 21:49:05,418 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 23:55:27] 2025-06-04 21:49:05,526 | INFO     | sufficient remaining disk space (496988323840 B)
[2025-06-04 23:55:27] 2025-06-04 21:49:05,526 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:55:27] 2025-06-04 21:49:05,526 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:55:27] 2025-06-04 21:49:05,526 | INFO     | update_server=False
[2025-06-04 23:55:27] 2025-06-04 21:49:05,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:55:27] 2025-06-04 21:49:05,527 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 23:55:27] 2025-06-04 21:49:05,528 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:55:27] 2025-06-04 21:49:05,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:55:27] 2025-06-04 21:49:05,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:55:27] 2025-06-04 21:49:05,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:55:27] 2025-06-04 21:49:05,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:55:27] 2025-06-04 21:49:05,688 | INFO     | aborting loop
[2025-06-04 23:55:27] 2025-06-04 21:49:06,270 | INFO     | all data control threads have been joined
[2025-06-04 23:55:27] 2025-06-04 21:49:06,293 | INFO     | all payload control threads have been joined
[2025-06-04 23:55:27] 2025-06-04 21:49:06,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:55:27] 2025-06-04 21:49:06,532 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:06,562 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:06,694 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:06,807 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:06,976 | INFO     | all job control threads have been joined
[2025-06-04 23:55:27] 2025-06-04 21:49:07,031 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,276 | INFO     | [data] control thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,299 | INFO     | [payload] control thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,334 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,542 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,638 | INFO     | [job] validate thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:55:27] 2025-06-04 21:49:07,785 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:07,982 | INFO     | [job] control thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:08,111 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:08,764 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:10,523 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:15,953 | INFO     | job.realtimelogging is not enabled
[2025-06-04 23:55:27] 2025-06-04 21:49:16,959 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:55:27] 2025-06-04 21:49:18,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186689947456)>', '<ExcThread(monitor, started 140185970923264)>']
[2025-06-04 23:55:27] 2025-06-04 21:49:19,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:55:27] 2025-06-04 21:49:19,612 | INFO     | [monitor] control thread has ended
[2025-06-04 23:55:27] 2025-06-04 21:49:23,671 | INFO     | all workflow threads have been joined
[2025-06-04 23:55:27] 2025-06-04 21:49:23,671 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:55:27] 2025-06-04 21:49:23,672 | INFO     | traces error code: 0
[2025-06-04 23:55:27] 2025-06-04 21:49:23,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:55:27] 2025-06-04 21:49:24,015 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:55:27] 2025-06-04 21:49:24,058 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:55:27] 2025-06-04 21:49:24,104 [wrapper] pilotpid: 1690
[2025-06-04 23:55:27] 2025-06-04 21:49:24,169 [wrapper] Pilot exit status: 0
[2025-06-04 23:55:27] 2025-06-04 21:49:24,602 [wrapper] pandaids: 6678313230
[2025-06-04 23:55:27] 2025-06-04 21:49:25,225 [wrapper] cleanup supervisor_pilot 22505 1691
[2025-06-04 23:55:27] 2025-06-04 21:49:25,258 [wrapper] Test setup, not cleaning
[2025-06-04 23:55:27] 2025-06-04 21:49:25,316 [wrapper] apfmon messages muted
[2025-06-04 23:55:27] 2025-06-04 21:49:25,354 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:55:27] 2025-06-04 21:49:25,428 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:55:27]  *** Error codes and diagnostics ***
[2025-06-04 23:55:27]     "exeErrorCode": 0,
[2025-06-04 23:55:27]     "exeErrorDiag": "",
[2025-06-04 23:55:27]     "pilotErrorCode": 0,
[2025-06-04 23:55:27]     "pilotErrorDiag": "",
[2025-06-04 23:55:27]  *** Listing of results directory ***
[2025-06-04 23:55:27] total 391380
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-04 23:55:27] -rwx------. 1 boinc boinc     37140 Jun  4 06:19 runpilot2-wrapper.sh
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:19 queuedata.json
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:55:27] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:49 run_atlas
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:49 job.xml
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc      6393 Jun  4 19:49 init_data.xml
[2025-06-04 23:55:27] -rw-r--r--. 2 boinc boinc 214287665 Jun  4 19:49 EVNT.45006593._002095.pool.root.1
[2025-06-04 23:55:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:49 start_atlas.sh
[2025-06-04 23:55:27] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:49 shared
[2025-06-04 23:55:27] -rw-r--r--. 2 boinc boinc    508872 Jun  4 19:49 input.tar.gz
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:49 boinc_lockfile
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc      2525 Jun  4 19:49 pandaJob.out
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc    990984 Jun  4 19:52 agis_schedconf.cvmfs.json
[2025-06-04 23:55:27] drwx------. 4 boinc boinc      4096 Jun  4 19:52 pilot3
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc 179463576 Jun  4 23:46 HITS.45006595._052324.pool.root.1
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc       531 Jun  4 23:46 boinc_task_state.xml
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc      1015 Jun  4 23:47 memory_monitor_summary.json
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc   1598969 Jun  4 23:47 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc    395107 Jun  4 23:47 log.45006595._052324.job.log.tgz.1
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc        95 Jun  4 23:48 pilot_heartbeat.json
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc      7686 Jun  4 23:49 heartbeat.json
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc      4612 Jun  4 23:49 pilotlog.txt
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc   1206867 Jun  4 23:49 log.45006595._052324.job.log.1
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc       357 Jun  4 23:49 output.list
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc       620 Jun  4 23:49 runtime_log
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc   1617920 Jun  4 23:49 result.tar.gz
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc      8673 Jun  4 23:49 runtime_log.err
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc       657 Jun  4 23:49 fo1LDm8lug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMCnKDmVmoXYm.diag
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc      8192 Jun  4 23:55 boinc_mmap_file
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc        28 Jun  4 23:55 wrapper_checkpoint.txt
[2025-06-04 23:55:27] -rw-r--r--. 1 boinc boinc     20497 Jun  4 23:55 stderr.txt
[2025-06-04 23:55:27] HITS file was successfully produced:
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc 179463576 Jun  4 23:46 shared/HITS.pool.root.1
[2025-06-04 23:55:27]  *** Contents of shared directory: ***
[2025-06-04 23:55:27] total 386624
[2025-06-04 23:55:27] -rw-r--r--. 2 boinc boinc 214287665 Jun  4 19:49 ATLAS.root_0
[2025-06-04 23:55:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:49 start_atlas.sh
[2025-06-04 23:55:27] -rw-r--r--. 2 boinc boinc    508872 Jun  4 19:49 input.tar.gz
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc 179463576 Jun  4 23:46 HITS.pool.root.1
[2025-06-04 23:55:27] -rw-------. 1 boinc boinc   1617920 Jun  4 23:49 result.tar.gz
23:55:29 (27857): run_atlas exited; CPU time 50859.516446
23:55:29 (27857): called boinc_finish(0)

</stderr_txt>
]]>

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