Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:37:41 (14831): wrapper (7.7.26015): starting
05:37:41 (14831): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 05:37:41] Arguments: --nthreads 12
[2025-06-04 05:37:41] Threads: 12
[2025-06-04 05:37:41] Checking for CVMFS
[2025-06-04 05:37:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:37:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:37:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:37:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:37:41] 2.11.2.0 2914 35511 83960 146775 1 56 18567308 20275201 1 130560 0 15889999 99.983 6253484 7645 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 05:37:41] CVMFS is ok
[2025-06-04 05:37:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:37:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:37:41] Further information can be found at the LHC@home message board.
[2025-06-04 05:37:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:37:41] Checking for apptainer binary...
[2025-06-04 05:37:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:37:41] Running /usr/bin/apptainer --version
[2025-06-04 05:37:41] apptainer version 1.3.2-1.el7
[2025-06-04 05:37:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:37:43] c-205-5.aglt2.org
[2025-06-04 05:37:43] apptainer works
[2025-06-04 05:37:43] Set ATHENA_PROC_NUMBER=12
[2025-06-04 05:37:43] Set ATHENA_CORE_NUMBER=12
[2025-06-04 05:37:43] Starting ATLAS job with PandaID=6678287223
[2025-06-04 05:37:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:40:26]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:40:26]  is_altstaged=None
[2025-06-04 06:40:26]  is_tar=False
[2025-06-04 06:40:26]  lfn=log.45006595._051870.job.log.tgz.1
[2025-06-04 06:40:26]  mtime=0
[2025-06-04 06:40:26]  protocol_id=None
[2025-06-04 06:40:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 06:40:26]  replicas=None
[2025-06-04 06:40:26]  scope=mc23_13p6TeV
[2025-06-04 06:40:26]  status=None
[2025-06-04 06:40:26]  status_code=0
[2025-06-04 06:40:26]  storage_token=
[2025-06-04 06:40:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678287223/log.45006595._051870.job.log.tgz.1
[2025-06-04 06:40:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/12/log.45006595._051870.job.log.tgz.1
[2025-06-04 06:40:26]  workdir=None
[2025-06-04 06:40:26] ]
[2025-06-04 06:40:26] 2025-06-04 10:39:58,926 | INFO     | transferring file log.45006595._051870.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678287223/log.45006595._051870.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 06:40:26] 2025-06-04 10:39:58,926 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678287223/log.45006595._051870.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._051870.job
[2025-06-04 06:40:26] 2025-06-04 10:39:58,948 | INFO     | adding to output.list: log.45006595._051870.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/12/log.45006595._051870.job.log.tg
[2025-06-04 06:40:26] 2025-06-04 10:39:58,949 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 06:40:26] 2025-06-04 10:39:58,949 | INFO     | summary of transferred files:
[2025-06-04 06:40:26] 2025-06-04 10:39:58,949 | INFO     |  -- lfn=log.45006595._051870.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 06:40:26] 2025-06-04 10:39:58,949 | INFO     | stage-out finished correctly
[2025-06-04 06:40:26] 2025-06-04 10:39:59,191 | INFO     | PID=18419 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 06:40:26] 2025-06-04 10:39:59,621 | INFO     | monitor loop #281: job 0:6678287223 is in state 'finished'
[2025-06-04 06:40:26] 2025-06-04 10:39:59,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:40:26] 2025-06-04 10:39:59,784 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 06:40:26] 2025-06-04 10:40:01,467 | INFO     | job 6678287223 has state=finished
[2025-06-04 06:40:26] 2025-06-04 10:40:01,468 | INFO     | preparing for final server update for job 6678287223 in state='finished'
[2025-06-04 06:40:26] 2025-06-04 10:40:01,468 | INFO     | this job has now completed (state=finished)
[2025-06-04 06:40:26] 2025-06-04 10:40:01,468 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 06:40:26] 2025-06-04 10:40:01,468 | INFO     | log transfer has been attempted: DONE
[2025-06-04 06:40:26] 2025-06-04 10:40:01,469 | INFO     | job 6678287223 has finished - writing final server update
[2025-06-04 06:40:26] 2025-06-04 10:40:01,469 | INFO     | total number of processed events: 400 (read)
[2025-06-04 06:40:26] 2025-06-04 10:40:01,470 | INFO     | executing command: lscpu
[2025-06-04 06:40:26] 2025-06-04 10:40:01,498 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 06:40:26] 2025-06-04 10:40:02,125 | INFO     | monitor loop #282: job 0:6678287223 is in state 'finished'
[2025-06-04 06:40:26] 2025-06-04 10:40:02,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:40:26] 2025-06-04 10:40:04,628 | INFO     | monitor loop #283: job 0:6678287223 is in state 'finished'
[2025-06-04 06:40:26] 2025-06-04 10:40:04,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:40:26] 2025-06-04 10:40:06,151 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 06:40:26] 2025-06-04 10:40:06,151 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678287223/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 06:40:26] 2025-06-04 10:40:06,152 | INFO     | extracted standard info from prmon json
[2025-06-04 06:40:26] 2025-06-04 10:40:06,153 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:40:26] 2025-06-04 10:40:06,153 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:40:26] 2025-06-04 10:40:06,153 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:40:26] 2025-06-04 10:40:06,153 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:40:26] 2025-06-04 10:40:06,155 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:40:26] 2025-06-04 10:40:06,156 | INFO     | sum of square deviations: 48810217.5
[2025-06-04 06:40:26] 2025-06-04 10:40:06,156 | INFO     | sum of deviations: -5331182291.0
[2025-06-04 06:40:26] 2025-06-04 10:40:06,156 | INFO     | mean x: 1749031829.5
[2025-06-04 06:40:26] 2025-06-04 10:40:06,157 | INFO     | mean y: 2833302.1481481483
[2025-06-04 06:40:26] 2025-06-04 10:40:06,157 | INFO     | -- intersect: 191036760078.35504
[2025-06-04 06:40:26] 2025-06-04 10:40:06,157 | INFO     | intersect: 191036760078.35504
[2025-06-04 06:40:26] 2025-06-04 10:40:06,157 | INFO     | chi2: 0.0426324396059416
[2025-06-04 06:40:26] 2025-06-04 10:40:06,157 | INFO     | -- intersect: 191036760078.35504
[2025-06-04 06:40:26] 2025-06-04 10:40:06,158 | INFO     | current memory leak: -109.22 B/s (using 54 data points, chi2=0.04)
[2025-06-04 06:40:26] 2025-06-04 10:40:06,158 | INFO     | ..............................
[2025-06-04 06:40:26] 2025-06-04 10:40:06,158 | INFO     | . Timing measurements:
[2025-06-04 06:40:26] 2025-06-04 10:40:06,158 | INFO     | . get job = 0 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,158 | INFO     | . initial setup = 2 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,159 | INFO     | . payload setup = 9 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,159 | INFO     | . stage-in = 0 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,159 | INFO     | . payload execution = 3691 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,159 | INFO     | . stage-out = 0 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,159 | INFO     | . log creation = 0 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,159 | INFO     | ..............................
[2025-06-04 06:40:26] 2025-06-04 10:40:06,241 | INFO     | 
[2025-06-04 06:40:26] 2025-06-04 10:40:06,242 | INFO     | job summary report
[2025-06-04 06:40:26] 2025-06-04 10:40:06,242 | INFO     | --------------------------------------------------
[2025-06-04 06:40:26] 2025-06-04 10:40:06,242 | INFO     | PanDA job id: 6678287223
[2025-06-04 06:40:26] 2025-06-04 10:40:06,242 | INFO     | task id: 45006595
[2025-06-04 06:40:26] 2025-06-04 10:40:06,242 | INFO     | errors: (none)
[2025-06-04 06:40:26] 2025-06-04 10:40:06,243 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:40:26] 2025-06-04 10:40:06,243 | INFO     | pilot state: finished 
[2025-06-04 06:40:26] 2025-06-04 10:40:06,243 | INFO     | transexitcode: 0
[2025-06-04 06:40:26] 2025-06-04 10:40:06,243 | INFO     | exeerrorcode: 0
[2025-06-04 06:40:26] 2025-06-04 10:40:06,243 | INFO     | exeerrordiag: 
[2025-06-04 06:40:26] 2025-06-04 10:40:06,243 | INFO     | exitcode: 0
[2025-06-04 06:40:26] 2025-06-04 10:40:06,244 | INFO     | exitmsg: OK
[2025-06-04 06:40:26] 2025-06-04 10:40:06,244 | INFO     | cpuconsumptiontime: 40331 s
[2025-06-04 06:40:26] 2025-06-04 10:40:06,244 | INFO     | nevents: 400
[2025-06-04 06:40:26] 2025-06-04 10:40:06,244 | INFO     | neventsw: 0
[2025-06-04 06:40:26] 2025-06-04 10:40:06,244 | INFO     | pid: 24938
[2025-06-04 06:40:26] 2025-06-04 10:40:06,244 | INFO     | pgrp: 24938
[2025-06-04 06:40:26] 2025-06-04 10:40:06,245 | INFO     | corecount: 12
[2025-06-04 06:40:26] 2025-06-04 10:40:06,245 | INFO     | event service: False
[2025-06-04 06:40:26] 2025-06-04 10:40:06,245 | INFO     | sizes: {0: 2405013, 1: 2405212, 6: 2405418, 11: 2405446, 3705: 2431041, 3706: 2439982, 3707: 2440166, 3713: 2440336}
[2025-06-04 06:40:26] 2025-06-04 10:40:06,245 | INFO     | --------------------------------------------------
[2025-06-04 06:40:26] 2025-06-04 10:40:06,245 | INFO     | 
[2025-06-04 06:40:26] 2025-06-04 10:40:06,245 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 06:40:26] 2025-06-04 10:40:06,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,270 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,271 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,271 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,273 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:40:26] 2025-06-04 10:40:06,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:40:26] 2025-06-04 10:40:06,274 | INFO     | job 6678287223 has completed (purged errors)
[2025-06-04 06:40:26] 2025-06-04 10:40:06,274 | INFO     | overall cleanup function is called
[2025-06-04 06:40:26] 2025-06-04 10:40:07,282 | INFO     | --- collectZombieJob: --- 10, [24938]
[2025-06-04 06:40:26] 2025-06-04 10:40:07,283 | INFO     | zombie collector waiting for pid 24938
[2025-06-04 06:40:26] 2025-06-04 10:40:07,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:40:26] 2025-06-04 10:40:07,298 | INFO     | collected zombie processes
[2025-06-04 06:40:26] 2025-06-04 10:40:07,298 | INFO     | will attempt to kill all subprocesses of pid=24938
[2025-06-04 06:40:26] 2025-06-04 10:40:07,391 | INFO     | process IDs to be killed: [24938] (in reverse order)
[2025-06-04 06:40:26] 2025-06-04 10:40:07,451 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:40:26] 2025-06-04 10:40:07,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:40:26] 2025-06-04 10:40:07,456 | INFO     | did not find any defunct processes belonging to 24938
[2025-06-04 06:40:26] 2025-06-04 10:40:07,459 | INFO     | did not find any defunct processes belonging to 24938
[2025-06-04 06:40:26] 2025-06-04 10:40:07,459 | INFO     | ready for new job
[2025-06-04 06:40:26] 2025-06-04 10:40:07,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:40:26] 2025-06-04 10:40:07,460 | INFO     | **************************************
[2025-06-04 06:40:26] 2025-06-04 10:40:07,460 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:40:26] 2025-06-04 10:40:07,460 | INFO     | **************************************
[2025-06-04 06:40:26] 2025-06-04 10:40:07,460 | INFO     | 
[2025-06-04 06:40:26] 2025-06-04 10:40:07,461 | INFO     | architecture information:
[2025-06-04 06:40:26] 2025-06-04 10:40:07,461 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:40:26] 2025-06-04 10:40:07,475 | INFO     | cat /etc/os-release:
[2025-06-04 06:40:26] NAME="CentOS Linux"
[2025-06-04 06:40:26] VERSION="7 (Core)"
[2025-06-04 06:40:26] ID="centos"
[2025-06-04 06:40:26] ID_LIKE="rhel fedora"
[2025-06-04 06:40:26] VERSION_ID="7"
[2025-06-04 06:40:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:40:26] ANSI_COLOR="0;31"
[2025-06-04 06:40:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:40:26] HOME_URL="https://www.centos.org/"
[2025-06-04 06:40:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:40:26] 
[2025-06-04 06:40:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:40:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:40:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:40:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:40:26] 
[2025-06-04 06:40:26] 2025-06-04 10:40:07,476 | INFO     | **************************************
[2025-06-04 06:40:26] 2025-06-04 10:40:07,979 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 06:40:26] 2025-06-04 10:40:07,996 | INFO     | sufficient remaining disk space (29418848256 B)
[2025-06-04 06:40:26] 2025-06-04 10:40:07,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:40:26] 2025-06-04 10:40:07,996 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:40:26] 2025-06-04 10:40:07,996 | INFO     | update_server=False
[2025-06-04 06:40:26] 2025-06-04 10:40:07,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:40:26] 2025-06-04 10:40:07,997 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 06:40:26] 2025-06-04 10:40:07,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:40:26] 2025-06-04 10:40:07,997 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:40:26] 2025-06-04 10:40:07,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:40:26] 2025-06-04 10:40:07,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:40:26] 2025-06-04 10:40:07,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:40:26] 2025-06-04 10:40:08,137 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:40:26] 2025-06-04 10:40:08,137 | INFO     | aborting loop
[2025-06-04 06:40:26] 2025-06-04 10:40:08,320 | INFO     | all data control threads have been joined
[2025-06-04 06:40:26] 2025-06-04 10:40:08,434 | INFO     | all job control threads have been joined
[2025-06-04 06:40:26] 2025-06-04 10:40:08,922 | INFO     | all payload control threads have been joined
[2025-06-04 06:40:26] 2025-06-04 10:40:09,002 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,004 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,142 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,259 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,325 | INFO     | [data] control thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,424 | INFO     | [job] validate thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,440 | INFO     | [job] control thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,853 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,853 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,857 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:09,928 | INFO     | [payload] control thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:10,003 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:10,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:40:26] 2025-06-04 10:40:10,422 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:10,449 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:14,379 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:18,860 | INFO     | job.realtimelogging is not enabled
[2025-06-04 06:40:26] 2025-06-04 10:40:19,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:40:26] 2025-06-04 10:40:20,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487071123264)>', '<ExcThread(monitor, started 140486501201664)>']
[2025-06-04 06:40:26] 2025-06-04 10:40:21,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:40:26] 2025-06-04 10:40:21,065 | INFO     | [monitor] control thread has ended
[2025-06-04 06:40:26] 2025-06-04 10:40:25,829 | INFO     | all workflow threads have been joined
[2025-06-04 06:40:26] 2025-06-04 10:40:25,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:40:26] 2025-06-04 10:40:25,830 | INFO     | traces error code: 0
[2025-06-04 06:40:26] 2025-06-04 10:40:25,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:40:26] 2025-06-04 10:40:25,919 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:40:26] 2025-06-04 10:40:25,922 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:40:26] 2025-06-04 10:40:25,927 [wrapper] pilotpid: 18419
[2025-06-04 06:40:26] 2025-06-04 10:40:25,930 [wrapper] Pilot exit status: 0
[2025-06-04 06:40:26] 2025-06-04 10:40:25,947 [wrapper] pandaids: 6678287223
[2025-06-04 06:40:26] 2025-06-04 10:40:25,982 [wrapper] cleanup supervisor_pilot 25206 18420
[2025-06-04 06:40:26] 2025-06-04 10:40:25,986 [wrapper] Test setup, not cleaning
[2025-06-04 06:40:26] 2025-06-04 10:40:25,990 [wrapper] apfmon messages muted
[2025-06-04 06:40:26] 2025-06-04 10:40:25,994 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:40:26] 2025-06-04 10:40:25,998 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:40:26]  *** Error codes and diagnostics ***
[2025-06-04 06:40:26]     "exeErrorCode": 0,
[2025-06-04 06:40:26]     "exeErrorDiag": "",
[2025-06-04 06:40:26]     "pilotErrorCode": 0,
[2025-06-04 06:40:26]     "pilotErrorDiag": "",
[2025-06-04 06:40:26]  *** Listing of results directory ***
[2025-06-04 06:40:26] total 389236
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 06:40:26] -rwx------ 1 boincer umatlas     37140 Jun  4 00:07 runpilot2-wrapper.sh
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 00:07 queuedata.json
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas       100 Jun  4 05:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:40:26] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 05:37 run_atlas
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas       105 Jun  4 05:37 job.xml
[2025-06-04 06:40:26] -rw-r--r-- 2 boincer umatlas 215764720 Jun  4 05:37 EVNT.45006593._002078.pool.root.1
[2025-06-04 06:40:26] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:37 start_atlas.sh
[2025-06-04 06:40:26] drwxrwx--x 2 boincer umatlas      4096 Jun  4 05:37 shared
[2025-06-04 06:40:26] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 05:37 input.tar.gz
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas         0 Jun  4 05:37 boinc_lockfile
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 05:37 pandaJob.out
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas    986766 Jun  4 05:37 agis_schedconf.cvmfs.json
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas   1603667 Jun  4 05:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:40:26] drwx------ 4 boincer umatlas      4096 Jun  4 05:37 pilot3
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas      5867 Jun  4 06:27 init_data.xml
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas 177525473 Jun  4 06:39 HITS.45006595._051870.pool.root.1
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas        95 Jun  4 06:39 pilot_heartbeat.json
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas      1048 Jun  4 06:39 memory_monitor_summary.json
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas       529 Jun  4 06:39 boinc_task_state.xml
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas    358583 Jun  4 06:39 log.45006595._051870.job.log.tgz.1
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas      7752 Jun  4 06:40 heartbeat.json
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 06:40 boinc_mmap_file
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas        27 Jun  4 06:40 wrapper_checkpoint.txt
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas      4548 Jun  4 06:40 pilotlog.txt
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas    368621 Jun  4 06:40 log.45006595._051870.job.log.1
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas       357 Jun  4 06:40 output.list
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas       620 Jun  4 06:40 runtime_log
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas    747520 Jun  4 06:40 result.tar.gz
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas      8656 Jun  4 06:40 runtime_log.err
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas       658 Jun  4 06:40 GSKNDmiaug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS6mKDmOz8MJn.diag
[2025-06-04 06:40:26] -rw-r--r-- 1 boincer umatlas     21488 Jun  4 06:40 stderr.txt
[2025-06-04 06:40:26] HITS file was successfully produced:
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas 177525473 Jun  4 06:39 shared/HITS.pool.root.1
[2025-06-04 06:40:26]  *** Contents of shared directory: ***
[2025-06-04 06:40:26] total 385328
[2025-06-04 06:40:26] -rw-r--r-- 2 boincer umatlas 215764720 Jun  4 05:37 ATLAS.root_0
[2025-06-04 06:40:26] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:37 start_atlas.sh
[2025-06-04 06:40:26] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 05:37 input.tar.gz
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas 177525473 Jun  4 06:39 HITS.pool.root.1
[2025-06-04 06:40:26] -rw------- 1 boincer umatlas    747520 Jun  4 06:40 result.tar.gz
06:40:27 (14831): run_atlas exited; CPU time 40304.217459
06:40:27 (14831): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN