Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 11:37:45 (3629689): Detected: vboxwrapper 26206
2025-06-04 11:37:45 (3629689): Detected: BOINC client v8.0.2
2025-06-04 11:37:45 (3629689): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 11:37:45 (3629689): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 11:37:46 (3629689): Create VM. (boinc_774aa5bc4ecd6ad6, slot#9)
2025-06-04 11:37:46 (3629689): Setting Memory Size for VM. (4500MB)
2025-06-04 11:37:46 (3629689): Setting CPU Count for VM. (5)
2025-06-04 11:37:46 (3629689): Setting Chipset Options for VM.
2025-06-04 11:37:46 (3629689): Setting Graphics Controller Options for VM.
2025-06-04 11:37:46 (3629689): Setting Boot Options for VM.
2025-06-04 11:37:46 (3629689): Setting Network Configuration for NAT.
2025-06-04 11:37:46 (3629689): Enabling VM Network Access.
2025-06-04 11:37:46 (3629689): Disabling USB Support for VM.
2025-06-04 11:37:47 (3629689): Disabling COM Port Support for VM.
2025-06-04 11:37:47 (3629689): Disabling LPT Port Support for VM.
2025-06-04 11:37:47 (3629689): Disabling Audio Support for VM.
2025-06-04 11:37:47 (3629689): Disabling Clipboard Support for VM.
2025-06-04 11:37:47 (3629689): Disabling Drag and Drop Support for VM.
2025-06-04 11:37:47 (3629689): Adding storage controller(s) to VM.
2025-06-04 11:37:47 (3629689): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 11:37:49 (3629689): Adding VirtualBox Guest Additions to VM.
2025-06-04 11:37:49 (3629689): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 11:37:49 (3629689): forwarding host port 38061 to guest port 80
2025-06-04 11:37:49 (3629689): Enabling remote desktop for VM.
2025-06-04 11:37:49 (3629689): Required extension pack not installed, remote desktop not enabled.
2025-06-04 11:37:49 (3629689): Enabling shared directory for VM.
2025-06-04 11:37:49 (3629689): Starting VM using VBoxManage interface. (boinc_774aa5bc4ecd6ad6, slot#9)
2025-06-04 11:37:51 (3629689): Successfully started VM. (PID = '3630271')
2025-06-04 11:37:51 (3629689): Reporting VM Process ID to BOINC.
2025-06-04 11:37:51 (3629689): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 11:37:51 (3629689): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 11:37:51 (3629689): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 11:37:51 (3629689): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 11:37:51 (3629689): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 11:37:51 (3629689): Detected: Web Application Enabled (http://localhost:38061)
2025-06-04 11:37:51 (3629689): Preference change detected
2025-06-04 11:37:51 (3629689): Setting CPU throttle for VM. (100%)
2025-06-04 11:37:51 (3629689): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 11:37:53 (3629689): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 11:37:53 (3629689): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 11:37:56 (3629689): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 11:37:56 (3629689): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 11:37:56 (3629689): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 11:38:03 (3629689): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 11:38:03 (3629689): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 11:38:09 (3629689): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000168 main     Log opened 2025-06-04T09:38:07.769965000Z
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000289 main     OS Product: Linux
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000339 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000365 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000389 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000390 main     Process ID: 1314
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 11:38:09 (3629689): Guest Log: 00:00:00.001793 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 11:38:09 (3629689): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 11:38:09 (3629689): Guest Log: [INFO] Mounting shared directory
2025-06-04 11:38:09 (3629689): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 11:38:14 (3629689): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 11:38:14 (3629689): Guest Log: [INFO] Detected branch: prod
2025-06-04 11:38:15 (3629689): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 11:38:15 (3629689): Guest Log: Copying input files
2025-06-04 11:38:15 (3629689): Guest Log: Copied input files into RunAtlas.
2025-06-04 11:38:16 (3629689): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 11:38:16 (3629689): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 11:38:16 (3629689): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 11:38:16 (3629689): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 11:38:27 (3629689): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 11:38:28 (3629689): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 11:38:28 (3629689): Guest Log: 2.6.3.0 1588 0 30184 146775 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 11:38:29 (3629689): Guest Log: copied the webapp to /var/www
2025-06-04 11:38:29 (3629689): Guest Log: ATHENA_PROC_NUMBER=5
2025-06-04 11:38:29 (3629689): Guest Log: ATHENA_CORE_NUMBER=5
2025-06-04 11:38:30 (3629689): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 11:38:30 (3629689): Guest Log:  *** Starting ATLAS job. (PandaID=6678313183 taskID=45006595) ***
2025-06-04 12:40:22 (3629689): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 12:40:43 (3629689): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 13:17:13 (3629689): Status Report: Elapsed Time: '6000.000000'
2025-06-04 13:17:13 (3629689): Status Report: CPU Time: '25003.570000'
2025-06-04 13:26:05 (3629689): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 13:26:25 (3629689): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 13:31:27 (3629689): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 13:31:47 (3629689): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 14:00:24 (3629689): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 14:00:45 (3629689): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 14:01:05 (3629689): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 14:01:25 (3629689): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 14:30:53 (3629689): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 14:31:13 (3629689): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 14:41:45 (3629689): Guest Log:  *** Job finished ***
2025-06-04 14:41:45 (3629689): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:33,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:34,212 | INFO     | [job] queue monitor thread has finished
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:34,313 | INFO     | [data] queue_monitor thread has finished
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:36,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741811853120)>', '<ExcThread(monitor, started 139741240481536)>']
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:36,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:36,643 | INFO     | [monitor] control thread has ended
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,193 | INFO     | all workflow threads have been joined
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,193 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,193 | INFO     | traces error code: 0
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,318 [wrapper] ==== pilot stdout END ====
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,329 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,339 [wrapper] pilotpid: 5947
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:41,352 [wrapper] Pilot exit status: 0
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:44,061 [wrapper] pandaids: 6678313183
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:44,099 [wrapper] cleanup supervisor_pilot  8260 5948
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:44,115 [wrapper] Test setup, not cleaning
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:44,121 [wrapper] apfmon messages muted
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:44,128 [wrapper] ==== wrapper stdout END ====
2025-06-04 14:41:45 (3629689): Guest Log: 2025-06-04 12:39:44,133 [wrapper] ==== wrapper stderr END ====
2025-06-04 14:41:45 (3629689): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 14:41:45 (3629689): Guest Log:     "exeErrorCode": 0,
2025-06-04 14:41:45 (3629689): Guest Log:     "exeErrorDiag": "",
2025-06-04 14:41:45 (3629689): Guest Log:     "pilotErrorCode": 0,
2025-06-04 14:41:45 (3629689): Guest Log:     "pilotErrorDiag": "",
2025-06-04 14:41:45 (3629689): Guest Log:  *** Listing of results directory ***
2025-06-04 14:41:45 (3629689): Guest Log: total 178056
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 04:04 pilot3.tar.gz
2025-06-04 14:41:45 (3629689): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 04:15 runpilot2-wrapper.sh
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 04:15 queuedata.json
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas      9411 Jun  4 09:38 init_data.xml
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  4 09:38 start_atlas.sh
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas    508875 Jun  4 09:38 input.tar.gz
2025-06-04 14:41:45 (3629689): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 09:38 EVNT.45006593._002093.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 09:38 pandaJob.out
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas    986766 Jun  4 09:43 agis_schedconf.cvmfs.json
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 09:43 agis_ddmendpoints.agis.ALL.json
2025-06-04 14:41:45 (3629689): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 09:43 pilot3
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas 176181987 Jun  4 12:38 HITS.45006595._052277.pool.root.1
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 12:39 pilot_heartbeat.json
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas      1034 Jun  4 12:39 memory_monitor_summary.json
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas    320208 Jun  4 12:39 log.45006595._052277.job.log.tgz.1
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas      7732 Jun  4 12:39 heartbeat.json
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 12:39 pilotlog.txt
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas    869201 Jun  4 12:39 log.45006595._052277.job.log.1
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 12:39 output.list
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 12:39 runtime_log
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas   1208320 Jun  4 12:39 result.tar.gz
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 atlas atlas      8602 Jun  4 12:39 runtime_log.err
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas       660 Jun  4 12:39 FKFKDmhiug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvAnKDmLFeaRn.diag
2025-06-04 14:41:45 (3629689): Guest Log: Looking for outputfile HITS.45006595._052277.pool.root.1
2025-06-04 14:41:45 (3629689): Guest Log: HITS file was successfully produced
2025-06-04 14:41:45 (3629689): Guest Log: -rw-------. 1 atlas atlas 176181987 Jun  4 12:38 /home/atlas/RunAtlas/HITS.45006595._052277.pool.root.1
2025-06-04 14:41:45 (3629689): Guest Log: Successfully finished the ATLAS job!
2025-06-04 14:41:45 (3629689): Guest Log: Copying the results back to the shared directory!
2025-06-04 14:41:45 (3629689): Guest Log:  *** Contents of shared directory: ***
2025-06-04 14:41:45 (3629689): Guest Log: total 214916
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 root root 218317433 Jun  4 09:37 ATLAS.root_0
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 root root      9411 Jun  4 09:37 init_data.xml
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 root root    508875 Jun  4 09:37 input.tar.gz
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 root root   1208320 Jun  4  2025 result.tar.gz
2025-06-04 14:41:45 (3629689): Guest Log: -rw-r--r--. 1 root root     15093 Jun  4 09:37 start_atlas.sh
2025-06-04 14:41:45 (3629689): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 14:41:45 (3629689): VM Completion File Detected.
2025-06-04 14:41:45 (3629689): Powering off VM.
2025-06-04 14:41:45 (3629689): Successfully stopped VM.
2025-06-04 14:41:45 (3629689): Deregistering VM. (boinc_774aa5bc4ecd6ad6, slot#9)
2025-06-04 14:41:45 (3629689): Removing network bandwidth throttle group from VM.
2025-06-04 14:41:46 (3629689): Removing VM from VirtualBox.
14:41:51 (3629689): called boinc_finish(0)

</stderr_txt>
]]>

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