Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:33:59 (4977): wrapper (7.7.26015): starting
05:33:59 (4977): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 05:33:59] Arguments: --nthreads 12
[2025-06-04 05:33:59] Threads: 12
[2025-06-04 05:33:59] Checking for CVMFS
[2025-06-04 05:33:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:33:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:33:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:33:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:33:59] 2.11.2.0 28623 28131 84576 146775 1 56 18456048 20275200 1 130560 0 13997178 99.983 5321425 6607 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 05:33:59] CVMFS is ok
[2025-06-04 05:33:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:33:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:33:59] Further information can be found at the LHC@home message board.
[2025-06-04 05:33:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:33:59] Checking for apptainer binary...
[2025-06-04 05:33:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:33:59] Running /usr/bin/apptainer --version
[2025-06-04 05:33:59] apptainer version 1.3.2-1.el7
[2025-06-04 05:33:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:34:00] c-205-20.aglt2.org
[2025-06-04 05:34:00] apptainer works
[2025-06-04 05:34:00] Set ATHENA_PROC_NUMBER=12
[2025-06-04 05:34:00] Set ATHENA_CORE_NUMBER=12
[2025-06-04 05:34:00] Starting ATLAS job with PandaID=6678312720
[2025-06-04 05:34:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:39:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:39:16]  domain=
[2025-06-04 06:39:16]  filesize=358624
[2025-06-04 06:39:16]  filetype=log
[2025-06-04 06:39:16]  guid=e8602974-ddbe-4f25-969d-0b2af7b5d2c2
[2025-06-04 06:39:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 06:39:16]  is_altstaged=None
[2025-06-04 06:39:16]  is_tar=False
[2025-06-04 06:39:16]  lfn=log.45006595._052166.job.log.tgz.1
[2025-06-04 06:39:16]  mtime=0
[2025-06-04 06:39:16]  protocol_id=None
[2025-06-04 06:39:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 06:39:16]  replicas=None
[2025-06-04 06:39:16]  scope=mc23_13p6TeV
[2025-06-04 06:39:16]  status=None
[2025-06-04 06:39:16]  status_code=0
[2025-06-04 06:39:16]  storage_token=
[2025-06-04 06:39:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678312720/log.45006595._052166.job.log.tgz.1
[2025-06-04 06:39:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/40/log.45006595._052166.job.log.tgz.1
[2025-06-04 06:39:16]  workdir=None
[2025-06-04 06:39:16] ]
[2025-06-04 06:39:16] 2025-06-04 10:38:58,231 | INFO     | transferring file log.45006595._052166.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678312720/log.45006595._052166.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 06:39:16] 2025-06-04 10:38:58,231 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678312720/log.45006595._052166.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._052166.job
[2025-06-04 06:39:16] 2025-06-04 10:38:58,255 | INFO     | adding to output.list: log.45006595._052166.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/40/log.45006595._052166.job.log.tg
[2025-06-04 06:39:16] 2025-06-04 10:38:58,256 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 06:39:16] 2025-06-04 10:38:58,256 | INFO     | summary of transferred files:
[2025-06-04 06:39:16] 2025-06-04 10:38:58,256 | INFO     |  -- lfn=log.45006595._052166.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 06:39:16] 2025-06-04 10:38:58,256 | INFO     | stage-out finished correctly
[2025-06-04 06:39:16] 2025-06-04 10:38:58,577 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 06:39:16] 2025-06-04 10:38:58,693 | INFO     | job 6678312720 has state=finished
[2025-06-04 06:39:16] 2025-06-04 10:38:58,693 | INFO     | preparing for final server update for job 6678312720 in state='finished'
[2025-06-04 06:39:16] 2025-06-04 10:38:58,693 | INFO     | this job has now completed (state=finished)
[2025-06-04 06:39:16] 2025-06-04 10:38:58,693 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 06:39:16] 2025-06-04 10:38:58,694 | INFO     | log transfer has been attempted: DONE
[2025-06-04 06:39:16] 2025-06-04 10:38:58,694 | INFO     | job 6678312720 has finished - writing final server update
[2025-06-04 06:39:16] 2025-06-04 10:38:58,694 | INFO     | total number of processed events: 400 (read)
[2025-06-04 06:39:16] 2025-06-04 10:38:58,695 | INFO     | executing command: lscpu
[2025-06-04 06:39:16] 2025-06-04 10:38:58,723 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 06:39:16] 2025-06-04 10:38:59,429 | INFO     | monitor loop #291: job 0:6678312720 is in state 'finished'
[2025-06-04 06:39:16] 2025-06-04 10:38:59,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:39:16] 2025-06-04 10:39:01,932 | INFO     | monitor loop #292: job 0:6678312720 is in state 'finished'
[2025-06-04 06:39:16] 2025-06-04 10:39:01,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:39:16] 2025-06-04 10:39:03,323 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 06:39:16] 2025-06-04 10:39:03,323 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678312720/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 06:39:16] 2025-06-04 10:39:03,325 | INFO     | extracted standard info from prmon json
[2025-06-04 06:39:16] 2025-06-04 10:39:03,325 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:39:16] 2025-06-04 10:39:03,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:39:16] 2025-06-04 10:39:03,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:39:16] 2025-06-04 10:39:03,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:39:16] 2025-06-04 10:39:03,328 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:39:16] 2025-06-04 10:39:03,328 | INFO     | sum of square deviations: 57407588.0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,328 | INFO     | sum of deviations: -5462920453.0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,329 | INFO     | mean x: 1749031697.0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,329 | INFO     | mean y: 2846146.701754386
[2025-06-04 06:39:16] 2025-06-04 10:39:03,329 | INFO     | -- intersect: 166441140514.45325
[2025-06-04 06:39:16] 2025-06-04 10:39:03,329 | INFO     | intersect: 166441140514.45325
[2025-06-04 06:39:16] 2025-06-04 10:39:03,329 | INFO     | chi2: 0.06013253901687415
[2025-06-04 06:39:16] 2025-06-04 10:39:03,329 | INFO     | -- intersect: 166441140514.45325
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | current memory leak: -95.16 B/s (using 57 data points, chi2=0.06)
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | ..............................
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | . Timing measurements:
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | . get job = 0 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | . initial setup = 2 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | . payload setup = 9 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | . stage-in = 0 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,330 | INFO     | . payload execution = 3853 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,331 | INFO     | . stage-out = 0 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,331 | INFO     | . log creation = 0 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,331 | INFO     | ..............................
[2025-06-04 06:39:16] 2025-06-04 10:39:03,413 | INFO     | 
[2025-06-04 06:39:16] 2025-06-04 10:39:03,413 | INFO     | job summary report
[2025-06-04 06:39:16] 2025-06-04 10:39:03,413 | INFO     | --------------------------------------------------
[2025-06-04 06:39:16] 2025-06-04 10:39:03,413 | INFO     | PanDA job id: 6678312720
[2025-06-04 06:39:16] 2025-06-04 10:39:03,414 | INFO     | task id: 45006595
[2025-06-04 06:39:16] 2025-06-04 10:39:03,414 | INFO     | errors: (none)
[2025-06-04 06:39:16] 2025-06-04 10:39:03,414 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:39:16] 2025-06-04 10:39:03,414 | INFO     | pilot state: finished 
[2025-06-04 06:39:16] 2025-06-04 10:39:03,414 | INFO     | transexitcode: 0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,414 | INFO     | exeerrorcode: 0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,415 | INFO     | exeerrordiag: 
[2025-06-04 06:39:16] 2025-06-04 10:39:03,415 | INFO     | exitcode: 0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,415 | INFO     | exitmsg: OK
[2025-06-04 06:39:16] 2025-06-04 10:39:03,415 | INFO     | cpuconsumptiontime: 41485 s
[2025-06-04 06:39:16] 2025-06-04 10:39:03,415 | INFO     | nevents: 400
[2025-06-04 06:39:16] 2025-06-04 10:39:03,415 | INFO     | neventsw: 0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,416 | INFO     | pid: 15041
[2025-06-04 06:39:16] 2025-06-04 10:39:03,416 | INFO     | pgrp: 15041
[2025-06-04 06:39:16] 2025-06-04 10:39:03,416 | INFO     | corecount: 12
[2025-06-04 06:39:16] 2025-06-04 10:39:03,416 | INFO     | event service: False
[2025-06-04 06:39:16] 2025-06-04 10:39:03,416 | INFO     | sizes: {0: 2405184, 1: 2405212, 5: 2405418, 11: 2405474, 3866: 2431126, 3868: 2440067, 3869: 2440251, 3874: 2440421}
[2025-06-04 06:39:16] 2025-06-04 10:39:03,416 | INFO     | --------------------------------------------------
[2025-06-04 06:39:16] 2025-06-04 10:39:03,417 | INFO     | 
[2025-06-04 06:39:16] 2025-06-04 10:39:03,417 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 06:39:16] 2025-06-04 10:39:03,441 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,441 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,441 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,441 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,442 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:39:16] 2025-06-04 10:39:03,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:39:16] 2025-06-04 10:39:03,444 | INFO     | job 6678312720 has completed (purged errors)
[2025-06-04 06:39:16] 2025-06-04 10:39:03,445 | INFO     | overall cleanup function is called
[2025-06-04 06:39:16] 2025-06-04 10:39:04,453 | INFO     | --- collectZombieJob: --- 10, [15041]
[2025-06-04 06:39:16] 2025-06-04 10:39:04,453 | INFO     | zombie collector waiting for pid 15041
[2025-06-04 06:39:16] 2025-06-04 10:39:04,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:39:16] 2025-06-04 10:39:04,453 | INFO     | collected zombie processes
[2025-06-04 06:39:16] 2025-06-04 10:39:04,454 | INFO     | will attempt to kill all subprocesses of pid=15041
[2025-06-04 06:39:16] 2025-06-04 10:39:04,542 | INFO     | process IDs to be killed: [15041] (in reverse order)
[2025-06-04 06:39:16] 2025-06-04 10:39:04,595 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:39:16] 2025-06-04 10:39:04,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:39:16] 2025-06-04 10:39:04,599 | INFO     | did not find any defunct processes belonging to 15041
[2025-06-04 06:39:16] 2025-06-04 10:39:04,601 | INFO     | did not find any defunct processes belonging to 15041
[2025-06-04 06:39:16] 2025-06-04 10:39:04,601 | INFO     | ready for new job
[2025-06-04 06:39:16] 2025-06-04 10:39:04,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:39:16] 2025-06-04 10:39:04,602 | INFO     | **************************************
[2025-06-04 06:39:16] 2025-06-04 10:39:04,603 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:39:16] 2025-06-04 10:39:04,603 | INFO     | **************************************
[2025-06-04 06:39:16] 2025-06-04 10:39:04,603 | INFO     | 
[2025-06-04 06:39:16] 2025-06-04 10:39:04,603 | INFO     | architecture information:
[2025-06-04 06:39:16] 2025-06-04 10:39:04,604 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:39:16] 2025-06-04 10:39:04,620 | INFO     | cat /etc/os-release:
[2025-06-04 06:39:16] NAME="CentOS Linux"
[2025-06-04 06:39:16] VERSION="7 (Core)"
[2025-06-04 06:39:16] ID="centos"
[2025-06-04 06:39:16] ID_LIKE="rhel fedora"
[2025-06-04 06:39:16] VERSION_ID="7"
[2025-06-04 06:39:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:39:16] ANSI_COLOR="0;31"
[2025-06-04 06:39:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:39:16] HOME_URL="https://www.centos.org/"
[2025-06-04 06:39:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:39:16] 
[2025-06-04 06:39:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:39:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:39:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:39:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:39:16] 
[2025-06-04 06:39:16] 2025-06-04 10:39:04,620 | INFO     | **************************************
[2025-06-04 06:39:16] 2025-06-04 10:39:05,123 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 06:39:16] 2025-06-04 10:39:05,139 | INFO     | sufficient remaining disk space (29417799680 B)
[2025-06-04 06:39:16] 2025-06-04 10:39:05,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:39:16] 2025-06-04 10:39:05,140 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:39:16] 2025-06-04 10:39:05,140 | INFO     | update_server=False
[2025-06-04 06:39:16] 2025-06-04 10:39:05,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:39:16] 2025-06-04 10:39:05,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:39:16] 2025-06-04 10:39:05,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:39:16] 2025-06-04 10:39:05,315 | INFO     | all data control threads have been joined
[2025-06-04 06:39:16] 2025-06-04 10:39:05,440 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:39:16] 2025-06-04 10:39:05,440 | INFO     | aborting loop
[2025-06-04 06:39:16] 2025-06-04 10:39:05,852 | INFO     | all payload control threads have been joined
[2025-06-04 06:39:16] 2025-06-04 10:39:05,861 | INFO     | all job control threads have been joined
[2025-06-04 06:39:16] 2025-06-04 10:39:06,103 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:39:16] 2025-06-04 10:39:06,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:39:16] 2025-06-04 10:39:06,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:39:16] 2025-06-04 10:39:06,146 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,146 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,154 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,186 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,275 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,320 | INFO     | [data] control thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:39:16] 2025-06-04 10:39:06,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,446 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,640 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,858 | INFO     | [payload] control thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,861 | INFO     | [job] control thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:06,902 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:07,244 | INFO     | [job] validate thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:07,462 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:08,367 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:09,147 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:39:16] 2025-06-04 10:39:10,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034488682304)>', '<ExcThread(monitor, started 140033885452032)>']
[2025-06-04 06:39:16] 2025-06-04 10:39:11,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:39:16] 2025-06-04 10:39:11,129 | INFO     | [monitor] control thread has ended
[2025-06-04 06:39:16] 2025-06-04 10:39:15,908 | INFO     | all workflow threads have been joined
[2025-06-04 06:39:16] 2025-06-04 10:39:15,909 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:39:16] 2025-06-04 10:39:15,909 | INFO     | traces error code: 0
[2025-06-04 06:39:16] 2025-06-04 10:39:15,909 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:39:16] 2025-06-04 10:39:15,997 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:39:16] 2025-06-04 10:39:16,000 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:39:16] 2025-06-04 10:39:16,004 [wrapper] pilotpid: 8607
[2025-06-04 06:39:16] 2025-06-04 10:39:16,008 [wrapper] Pilot exit status: 0
[2025-06-04 06:39:16] 2025-06-04 10:39:16,023 [wrapper] pandaids: 6678312720
[2025-06-04 06:39:16] 2025-06-04 10:39:16,064 [wrapper] cleanup supervisor_pilot 10358 8608
[2025-06-04 06:39:16] 2025-06-04 10:39:16,068 [wrapper] Test setup, not cleaning
[2025-06-04 06:39:16] 2025-06-04 10:39:16,072 [wrapper] apfmon messages muted
[2025-06-04 06:39:16] 2025-06-04 10:39:16,076 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:39:16] 2025-06-04 10:39:16,080 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:39:16]  *** Error codes and diagnostics ***
[2025-06-04 06:39:16]     "exeErrorCode": 0,
[2025-06-04 06:39:16]     "exeErrorDiag": "",
[2025-06-04 06:39:16]     "pilotErrorCode": 0,
[2025-06-04 06:39:16]     "pilotErrorDiag": "",
[2025-06-04 06:39:16]  *** Listing of results directory ***
[2025-06-04 06:39:16] total 390412
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 06:39:16] -rwx------ 1 boincer umatlas     37140 Jun  4 00:16 runpilot2-wrapper.sh
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 00:16 queuedata.json
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas       100 Jun  4 05:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:39:16] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 05:33 run_atlas
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas       105 Jun  4 05:33 job.xml
[2025-06-04 06:39:16] -rw-r--r-- 2 boincer umatlas 215191603 Jun  4 05:33 EVNT.45006593._002089.pool.root.1
[2025-06-04 06:39:16] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:33 start_atlas.sh
[2025-06-04 06:39:16] drwxrwx--x 2 boincer umatlas      4096 Jun  4 05:33 shared
[2025-06-04 06:39:16] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 05:33 input.tar.gz
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas         0 Jun  4 05:33 boinc_lockfile
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 05:34 pandaJob.out
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas    986766 Jun  4 05:34 agis_schedconf.cvmfs.json
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas   1603667 Jun  4 05:34 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:39:16] drwx------ 4 boincer umatlas      4096 Jun  4 05:34 pilot3
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 06:36 init_data.xml
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas 179279169 Jun  4 06:38 HITS.45006595._052166.pool.root.1
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas      1050 Jun  4 06:38 memory_monitor_summary.json
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 06:38 boinc_mmap_file
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas        27 Jun  4 06:38 wrapper_checkpoint.txt
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas       529 Jun  4 06:38 boinc_task_state.xml
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas    358624 Jun  4 06:38 log.45006595._052166.job.log.tgz.1
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas      7755 Jun  4 06:39 heartbeat.json
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas        95 Jun  4 06:39 pilot_heartbeat.json
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas      4353 Jun  4 06:39 pilotlog.txt
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas    380004 Jun  4 06:39 log.45006595._052166.job.log.1
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas       357 Jun  4 06:39 output.list
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas       620 Jun  4 06:39 runtime_log
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas    757760 Jun  4 06:39 result.tar.gz
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas       659 Jun  4 06:39 tmSNDm2iug7n9Rq4apOajLDm4fhM0noT9bVof3QYDmegaKDmFAOiSm.diag
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas      8661 Jun  4 06:39 runtime_log.err
[2025-06-04 06:39:16] -rw-r--r-- 1 boincer umatlas     21013 Jun  4 06:39 stderr.txt
[2025-06-04 06:39:16] HITS file was successfully produced:
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas 179279169 Jun  4 06:38 shared/HITS.pool.root.1
[2025-06-04 06:39:16]  *** Contents of shared directory: ***
[2025-06-04 06:39:16] total 386492
[2025-06-04 06:39:16] -rw-r--r-- 2 boincer umatlas 215191603 Jun  4 05:33 ATLAS.root_0
[2025-06-04 06:39:16] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:33 start_atlas.sh
[2025-06-04 06:39:16] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 05:33 input.tar.gz
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas 179279169 Jun  4 06:38 HITS.pool.root.1
[2025-06-04 06:39:16] -rw------- 1 boincer umatlas    757760 Jun  4 06:39 result.tar.gz
06:39:17 (4977): run_atlas exited; CPU time 41455.195855
06:39:17 (4977): called boinc_finish(0)

</stderr_txt>
]]>

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