Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:17:09 (906): wrapper (7.7.26015): starting
01:17:09 (906): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:17:09] Arguments: --nthreads 8
[2025-06-05 01:17:09] Threads: 8
[2025-06-05 01:17:09] Checking for CVMFS
[2025-06-05 01:17:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:17:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:17:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:17:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:17:11] 2.11.2.0 14683 33845 89840 146798 1 156 18640870 25165824 3156 130560 0 17626666 99.790 19956031 2139 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:17:11] CVMFS is ok
[2025-06-05 01:17:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:17:11] Checking for apptainer binary...
[2025-06-05 01:17:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:17:11] Running /usr/bin/apptainer --version
[2025-06-05 01:17:11] apptainer version 1.3.2-1.el7
[2025-06-05 01:17:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:17:13] cg-vwn437.simple-grid.lan
[2025-06-05 01:17:13] apptainer works
[2025-06-05 01:17:13] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:17:13] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:17:13] Starting ATLAS job with PandaID=6678313152
[2025-06-05 01:17:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:22:40]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:22:40] 2025-06-05 02:53:14,603 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6678313152/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 05:22:40] 2025-06-05 02:53:14,604 | INFO     | extracted standard info from prmon json
[2025-06-05 05:22:40] 2025-06-05 02:53:14,604 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:22:40] 2025-06-05 02:53:14,604 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:22:40] 2025-06-05 02:53:14,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:22:40] 2025-06-05 02:53:14,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:22:40] 2025-06-05 02:53:14,609 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:22:40] 2025-06-05 02:53:14,610 | INFO     | sum of square deviations: 2871616632.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,611 | INFO     | sum of deviations: -35838885523.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,612 | INFO     | mean x: 1749085497.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,612 | INFO     | mean y: 2521930.1952380952
[2025-06-05 05:22:40] 2025-06-05 02:53:14,612 | INFO     | -- intersect: 21831785003.2202
[2025-06-05 05:22:40] 2025-06-05 02:53:14,612 | INFO     | intersect: 21831785003.2202
[2025-06-05 05:22:40] 2025-06-05 02:53:14,612 | INFO     | chi2: 2.608989435078759
[2025-06-05 05:22:40] 2025-06-05 02:53:14,613 | INFO     | sum of square deviations: 2671343110.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,614 | INFO     | sum of deviations: -20674739393.99997
[2025-06-05 05:22:40] 2025-06-05 02:53:14,614 | INFO     | mean x: 1749085345.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,614 | INFO     | mean y: 2533274.1658536587
[2025-06-05 05:22:40] 2025-06-05 02:53:14,615 | INFO     | -- intersect: 13539500334.057882
[2025-06-05 05:22:40] 2025-06-05 02:53:14,615 | INFO     | intersect: 13539500334.057882
[2025-06-05 05:22:40] 2025-06-05 02:53:14,615 | INFO     | chi2: 1.8450757422872235
[2025-06-05 05:22:40] 2025-06-05 02:53:14,615 | INFO     | current chi2=1.8450757422872235 (change=29.28006079750472 %)
[2025-06-05 05:22:40] 2025-06-05 02:53:14,615 | INFO     | sum of square deviations: 2480604650.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,617 | INFO     | sum of deviations: -19575584633.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,617 | INFO     | mean x: 1749085192.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,617 | INFO     | mean y: 2534153.125
[2025-06-05 05:22:40] 2025-06-05 02:53:14,617 | INFO     | -- intersect: 13805364530.38217
[2025-06-05 05:22:40] 2025-06-05 02:53:14,617 | INFO     | intersect: 13805364530.38217
[2025-06-05 05:22:40] 2025-06-05 02:53:14,618 | INFO     | chi2: 1.844129746898179
[2025-06-05 05:22:40] 2025-06-05 02:53:14,618 | INFO     | current chi2=1.844129746898179 (change=0.051271357991613156 %)
[2025-06-05 05:22:40] 2025-06-05 02:53:14,618 | INFO     | right removable region: 199
[2025-06-05 05:22:40] 2025-06-05 02:53:14,618 | INFO     | sum of square deviations: 2671343110.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,620 | INFO     | sum of deviations: -71574644508.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,620 | INFO     | mean x: 1749085650.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,620 | INFO     | mean y: 2548889.8731707316
[2025-06-05 05:22:40] 2025-06-05 02:53:14,620 | INFO     | -- intersect: 46866683693.131035
[2025-06-05 05:22:40] 2025-06-05 02:53:14,620 | INFO     | intersect: 46866683693.131035
[2025-06-05 05:22:40] 2025-06-05 02:53:14,621 | INFO     | chi2: 0.9921393736440693
[2025-06-05 05:22:40] 2025-06-05 02:53:14,621 | INFO     | current chi2=0.9921393736440693 (change=61.97227323712335 %)
[2025-06-05 05:22:40] 2025-06-05 02:53:14,621 | INFO     | sum of square deviations: 2480604650.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,622 | INFO     | sum of deviations: -70327476541.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | mean x: 1749085802.5
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | mean y: 2547849.215
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | -- intersect: 49590776567.72096
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | intersect: 49590776567.72096
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | chi2: 0.9711453330190081
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | current chi2=0.9711453330190081 (change=2.116037442194376 %)
[2025-06-05 05:22:40] 2025-06-05 02:53:14,623 | INFO     | left removable region: 20
[2025-06-05 05:22:40] 2025-06-05 02:53:14,624 | INFO     | sum of square deviations: 1778377530.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,625 | INFO     | sum of deviations: -42355730640.00001
[2025-06-05 05:22:40] 2025-06-05 02:53:14,625 | INFO     | mean x: 1749085772.0
[2025-06-05 05:22:40] 2025-06-05 02:53:14,625 | INFO     | mean y: 2552223.810055866
[2025-06-05 05:22:40] 2025-06-05 02:53:14,625 | INFO     | -- intersect: 41660639202.163
[2025-06-05 05:22:40] 2025-06-05 02:53:14,625 | INFO     | intersect: 41660639202.163
[2025-06-05 05:22:40] 2025-06-05 02:53:14,626 | INFO     | chi2: 0.16886404753876738
[2025-06-05 05:22:40] 2025-06-05 02:53:14,626 | INFO     | -- intersect: 41660639202.163
[2025-06-05 05:22:40] 2025-06-05 02:53:14,626 | INFO     | current memory leak: -23.82 B/s (using 179 data points, chi2=0.17)
[2025-06-05 05:22:40] 2025-06-05 02:53:14,627 | INFO     | ..............................
[2025-06-05 05:22:40] 2025-06-05 02:53:14,627 | INFO     | . Timing measurements:
[2025-06-05 05:22:40] 2025-06-05 02:53:14,627 | INFO     | . get job = 0 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,627 | INFO     | . initial setup = 2 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,627 | INFO     | . payload setup = 17 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,628 | INFO     | . stage-in = 0 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,628 | INFO     | . payload execution = 12802 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,628 | INFO     | . stage-out = 3 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,628 | INFO     | . log creation = 1 s
[2025-06-05 05:22:40] 2025-06-05 02:53:14,628 | INFO     | ..............................
[2025-06-05 05:22:40] 2025-06-05 02:53:15,015 | INFO     | 
[2025-06-05 05:22:40] 2025-06-05 02:53:15,015 | INFO     | job summary report
[2025-06-05 05:22:40] 2025-06-05 02:53:15,015 | INFO     | --------------------------------------------------
[2025-06-05 05:22:40] 2025-06-05 02:53:15,015 | INFO     | PanDA job id: 6678313152
[2025-06-05 05:22:40] 2025-06-05 02:53:15,015 | INFO     | task id: 45006595
[2025-06-05 05:22:40] 2025-06-05 02:53:15,015 | INFO     | errors: (none)
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | pilot state: finished 
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | transexitcode: 0
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | exeerrorcode: 0
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | exeerrordiag: 
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | exitcode: 0
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | exitmsg: OK
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | cpuconsumptiontime: 48238 s
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | nevents: 400
[2025-06-05 05:22:40] 2025-06-05 02:53:15,016 | INFO     | neventsw: 0
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | pid: 15955
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | pgrp: 15955
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | corecount: 8
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | event service: False
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | sizes: {0: 2397115, 1: 2397370, 2: 2397370, 12: 2397632, 12823: 2426852, 12824: 2426851, 12828: 2435976, 12831: 2436032, 12911: 2436202}
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | --------------------------------------------------
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | 
[2025-06-05 05:22:40] 2025-06-05 02:53:15,017 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-05 05:22:40] 2025-06-05 02:53:15,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,421 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,421 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,421 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,421 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:22:40] 2025-06-05 02:53:15,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,423 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:22:40] 2025-06-05 02:53:15,423 | INFO     | job 6678313152 has completed (purged errors)
[2025-06-05 05:22:40] 2025-06-05 02:53:15,423 | INFO     | overall cleanup function is called
[2025-06-05 05:22:40] 2025-06-05 02:53:16,432 | INFO     | --- collectZombieJob: --- 10, [15955]
[2025-06-05 05:22:40] 2025-06-05 02:53:16,433 | INFO     | zombie collector waiting for pid 15955
[2025-06-05 05:22:40] 2025-06-05 02:53:16,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:22:40] 2025-06-05 02:53:16,433 | INFO     | collected zombie processes
[2025-06-05 05:22:40] 2025-06-05 02:53:16,433 | INFO     | will attempt to kill all subprocesses of pid=15955
[2025-06-05 05:22:40] 2025-06-05 02:53:16,541 | INFO     | process IDs to be killed: [15955] (in reverse order)
[2025-06-05 05:22:40] 2025-06-05 02:53:17,208 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:22:40] 2025-06-05 02:53:17,209 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:22:40] 2025-06-05 02:53:17,213 | INFO     | did not find any defunct processes belonging to 15955
[2025-06-05 05:22:40] 2025-06-05 02:53:17,216 | INFO     | did not find any defunct processes belonging to 15955
[2025-06-05 05:22:40] 2025-06-05 02:53:17,217 | INFO     | ready for new job
[2025-06-05 05:22:40] 2025-06-05 02:53:17,217 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:22:40] 2025-06-05 02:53:17,219 | INFO     | **************************************
[2025-06-05 05:22:40] 2025-06-05 02:53:17,219 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 05:22:40] 2025-06-05 02:53:17,219 | INFO     | **************************************
[2025-06-05 05:22:40] 2025-06-05 02:53:17,219 | INFO     | 
[2025-06-05 05:22:40] 2025-06-05 02:53:17,220 | INFO     | pilot is running in a VM
[2025-06-05 05:22:40] 2025-06-05 02:53:17,220 | INFO     | architecture information:
[2025-06-05 05:22:40] 2025-06-05 02:53:17,231 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:22:40] 2025-06-05 02:53:17,456 | INFO     | cat /etc/os-release:
[2025-06-05 05:22:40] NAME="CentOS Linux"
[2025-06-05 05:22:40] VERSION="7 (Core)"
[2025-06-05 05:22:40] ID="centos"
[2025-06-05 05:22:40] ID_LIKE="rhel fedora"
[2025-06-05 05:22:40] VERSION_ID="7"
[2025-06-05 05:22:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:22:40] ANSI_COLOR="0;31"
[2025-06-05 05:22:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:22:40] HOME_URL="https://www.centos.org/"
[2025-06-05 05:22:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:22:40] 
[2025-06-05 05:22:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:22:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:22:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:22:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:22:40] 
[2025-06-05 05:22:40] 2025-06-05 02:53:17,457 | INFO     | **************************************
[2025-06-05 05:22:40] 2025-06-05 02:53:17,961 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-05 05:22:40] 2025-06-05 02:53:18,135 | INFO     | sufficient remaining disk space (497157144576 B)
[2025-06-05 05:22:40] 2025-06-05 02:53:18,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:22:40] 2025-06-05 02:53:18,136 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:22:40] 2025-06-05 02:53:18,136 | INFO     | update_server=False
[2025-06-05 05:22:40] 2025-06-05 02:53:18,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:22:40] 2025-06-05 02:53:18,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:22:40] 2025-06-05 02:53:18,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:22:40] 2025-06-05 02:53:18,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:22:40] 2025-06-05 02:53:18,143 | INFO     | aborting loop
[2025-06-05 05:22:40] 2025-06-05 02:53:18,410 | INFO     | all job control threads have been joined
[2025-06-05 05:22:40] 2025-06-05 02:53:18,719 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:22:40] 2025-06-05 02:53:18,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:22:40] 2025-06-05 02:53:18,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:22:40] 2025-06-05 02:53:19,108 | INFO     | all data control threads have been joined
[2025-06-05 05:22:40] 2025-06-05 02:53:19,146 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,149 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,255 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,417 | INFO     | [job] control thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,454 | INFO     | all payload control threads have been joined
[2025-06-05 05:22:40] 2025-06-05 02:53:19,601 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,659 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,669 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:19,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:22:40] 2025-06-05 02:53:19,922 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:20,116 | INFO     | [data] control thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:20,145 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:20,411 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:20,461 | INFO     | [payload] control thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:20,588 | INFO     | [job] validate thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:20,776 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:22,150 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:22:40] 2025-06-05 02:53:23,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667726026560)>', '<ExcThread(monitor, started 140667107907328)>']
[2025-06-05 05:22:40] 2025-06-05 02:53:23,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:22:40] 2025-06-05 02:53:23,750 | INFO     | [monitor] control thread has ended
[2025-06-05 05:22:40] 2025-06-05 02:53:28,510 | INFO     | all workflow threads have been joined
[2025-06-05 05:22:40] 2025-06-05 02:53:28,511 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:22:40] 2025-06-05 02:53:28,511 | INFO     | traces error code: 0
[2025-06-05 05:22:40] 2025-06-05 02:53:28,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:22:40] 2025-06-05 02:53:28,940 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:22:40] 2025-06-05 02:53:29,031 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:22:40] 2025-06-05 02:53:29,098 [wrapper] pilotpid: 7391
[2025-06-05 05:22:40] 2025-06-05 02:53:29,190 [wrapper] Pilot exit status: 0
[2025-06-05 05:22:40] 2025-06-05 02:53:29,508 [wrapper] pandaids: 6678313152
[2025-06-05 05:22:40] 2025-06-05 02:53:30,225 [wrapper] cleanup supervisor_pilot   478 7392
[2025-06-05 05:22:40] 2025-06-05 02:53:30,280 [wrapper] Test setup, not cleaning
[2025-06-05 05:22:40] 2025-06-05 02:53:30,338 [wrapper] apfmon messages muted
[2025-06-05 05:22:40] 2025-06-05 02:53:30,373 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:22:40] 2025-06-05 02:53:30,399 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:22:40]  *** Error codes and diagnostics ***
[2025-06-05 05:22:40]     "exeErrorCode": 0,
[2025-06-05 05:22:40]     "exeErrorDiag": "",
[2025-06-05 05:22:40]     "pilotErrorCode": 0,
[2025-06-05 05:22:40]     "pilotErrorDiag": "",
[2025-06-05 05:22:40]  *** Listing of results directory ***
[2025-06-05 05:22:40] total 385256
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:12 queuedata.json
[2025-06-05 05:22:40] -rwx------. 1 boinc boinc     37140 Jun  4 06:13 runpilot2-wrapper.sh
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:22:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:17 run_atlas
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:17 job.xml
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc      6392 Jun  5 01:17 init_data.xml
[2025-06-05 05:22:40] -rw-r--r--. 2 boinc boinc 216011265 Jun  5 01:17 EVNT.45006593._002092.pool.root.1
[2025-06-05 05:22:40] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:17 start_atlas.sh
[2025-06-05 05:22:40] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:17 shared
[2025-06-05 05:22:40] -rw-r--r--. 2 boinc boinc    508884 Jun  5 01:17 input.tar.gz
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:17 boinc_lockfile
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc      2525 Jun  5 01:17 pandaJob.out
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc    987117 Jun  5 01:17 agis_schedconf.cvmfs.json
[2025-06-05 05:22:40] drwx------. 4 boinc boinc      4096 Jun  5 01:17 pilot3
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc 171661368 Jun  5 04:50 HITS.45006595._052246.pool.root.1
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc       530 Jun  5 04:50 boinc_task_state.xml
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc      1018 Jun  5 04:51 memory_monitor_summary.json
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc   1598969 Jun  5 04:51 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc    384459 Jun  5 04:51 log.45006595._052246.job.log.tgz.1
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc        95 Jun  5 04:52 pilot_heartbeat.json
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc      7693 Jun  5 04:53 heartbeat.json
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc      4416 Jun  5 04:53 pilotlog.txt
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc   1122482 Jun  5 04:53 log.45006595._052246.job.log.1
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc       357 Jun  5 04:53 output.list
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:53 runtime_log
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc   1525760 Jun  5 04:53 result.tar.gz
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc       657 Jun  5 04:53 C3TMDmjgug7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPgaKDmTEDVZm.diag
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc      8659 Jun  5 04:53 runtime_log.err
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc      8192 Jun  5 05:22 boinc_mmap_file
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc        28 Jun  5 05:22 wrapper_checkpoint.txt
[2025-06-05 05:22:40] -rw-r--r--. 1 boinc boinc     20466 Jun  5 05:22 stderr.txt
[2025-06-05 05:22:40] HITS file was successfully produced:
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc 171661368 Jun  5 04:50 shared/HITS.pool.root.1
[2025-06-05 05:22:40]  *** Contents of shared directory: ***
[2025-06-05 05:22:40] total 380600
[2025-06-05 05:22:40] -rw-r--r--. 2 boinc boinc 216011265 Jun  5 01:17 ATLAS.root_0
[2025-06-05 05:22:40] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:17 start_atlas.sh
[2025-06-05 05:22:40] -rw-r--r--. 2 boinc boinc    508884 Jun  5 01:17 input.tar.gz
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc 171661368 Jun  5 04:50 HITS.pool.root.1
[2025-06-05 05:22:40] -rw-------. 1 boinc boinc   1525760 Jun  5 04:53 result.tar.gz
05:22:42 (906): run_atlas exited; CPU time 48404.381783
05:22:42 (906): called boinc_finish(0)

</stderr_txt>
]]>

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