Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:39:24 (25222): wrapper (7.7.26015): starting
05:39:24 (25222): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 05:39:24] Arguments: --nthreads 10
[2025-06-04 05:39:24] Threads: 10
[2025-06-04 05:39:24] Checking for CVMFS
[2025-06-04 05:39:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:39:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:39:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:39:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:39:25] 2.11.2.0 1570 108674 240788 146775 2 141 13699152 18432000 16398 130560 0 483618332 99.069 999179313 35403 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 05:39:25] CVMFS is ok
[2025-06-04 05:39:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:39:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:39:25] Further information can be found at the LHC@home message board.
[2025-06-04 05:39:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:39:25] Checking for apptainer binary...
[2025-06-04 05:39:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:39:25] Running /usr/bin/apptainer --version
[2025-06-04 05:39:25] apptainer version 1.3.2-1.el7
[2025-06-04 05:39:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:39:26] c-210-9.aglt2.org
[2025-06-04 05:39:26] apptainer works
[2025-06-04 05:39:26] Set ATHENA_PROC_NUMBER=10
[2025-06-04 05:39:26] Set ATHENA_CORE_NUMBER=10
[2025-06-04 05:39:26] Starting ATLAS job with PandaID=6678313270
[2025-06-04 05:39:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:34:39]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:34:39] 2025-06-04 12:34:24,598 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678313270/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,600 | INFO     | extracted standard info from prmon json
[2025-06-04 08:34:39] 2025-06-04 12:34:24,600 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:34:39] 2025-06-04 12:34:24,600 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:34:39] 2025-06-04 12:34:24,601 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:34:39] 2025-06-04 12:34:24,601 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:34:39] 2025-06-04 12:34:24,607 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:34:39] 2025-06-04 12:34:24,608 | INFO     | sum of square deviations: 1550441296.7368464
[2025-06-04 08:34:39] 2025-06-04 12:34:24,610 | INFO     | sum of deviations: 25064868967.842087
[2025-06-04 08:34:39] 2025-06-04 12:34:24,610 | INFO     | mean x: 1749035220.1578948
[2025-06-04 08:34:39] 2025-06-04 12:34:24,610 | INFO     | mean y: 2542691.4502923978
[2025-06-04 08:34:39] 2025-06-04 12:34:24,610 | INFO     | -- intersect: -28272851356.46718
[2025-06-04 08:34:39] 2025-06-04 12:34:24,610 | INFO     | intersect: -28272851356.46718
[2025-06-04 08:34:39] 2025-06-04 12:34:24,611 | INFO     | chi2: 1.7832546786194214
[2025-06-04 08:34:39] 2025-06-04 12:34:24,611 | INFO     | sum of square deviations: 1418371751.4277098
[2025-06-04 08:34:39] 2025-06-04 12:34:24,612 | INFO     | sum of deviations: 24246906370.373478
[2025-06-04 08:34:39] 2025-06-04 12:34:24,612 | INFO     | mean x: 1749035067.6566265
[2025-06-04 08:34:39] 2025-06-04 12:34:24,612 | INFO     | mean y: 2541748.0240963856
[2025-06-04 08:34:39] 2025-06-04 12:34:24,612 | INFO     | -- intersect: -29897017011.01222
[2025-06-04 08:34:39] 2025-06-04 12:34:24,613 | INFO     | intersect: -29897017011.01222
[2025-06-04 08:34:39] 2025-06-04 12:34:24,613 | INFO     | chi2: 1.7850946337932438
[2025-06-04 08:34:39] 2025-06-04 12:34:24,613 | INFO     | current chi2=1.7850946337932438 (change=-0.10317960725872767 %)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,613 | INFO     | right removable region: 165
[2025-06-04 08:34:39] 2025-06-04 12:34:24,614 | INFO     | sum of square deviations: 1418365469.1084275
[2025-06-04 08:34:39] 2025-06-04 12:34:24,615 | INFO     | sum of deviations: -6698645915.61446
[2025-06-04 08:34:39] 2025-06-04 12:34:24,615 | INFO     | mean x: 1749035372.6626506
[2025-06-04 08:34:39] 2025-06-04 12:34:24,615 | INFO     | mean y: 2579005.078313253
[2025-06-04 08:34:39] 2025-06-04 12:34:24,615 | INFO     | -- intersect: 8262910288.183058
[2025-06-04 08:34:39] 2025-06-04 12:34:24,615 | INFO     | intersect: 8262910288.183058
[2025-06-04 08:34:39] 2025-06-04 12:34:24,616 | INFO     | chi2: 0.0705350203976627
[2025-06-04 08:34:39] 2025-06-04 12:34:24,616 | INFO     | current chi2=0.0705350203976627 (change=96.04459075625304 %)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,616 | INFO     | sum of square deviations: 1294020597.8012483
[2025-06-04 08:34:39] 2025-06-04 12:34:24,618 | INFO     | sum of deviations: -9571467042.136646
[2025-06-04 08:34:39] 2025-06-04 12:34:24,618 | INFO     | mean x: 1749035525.1614907
[2025-06-04 08:34:39] 2025-06-04 12:34:24,618 | INFO     | mean y: 2582449.236024845
[2025-06-04 08:34:39] 2025-06-04 12:34:24,618 | INFO     | -- intersect: 12939653090.193962
[2025-06-04 08:34:39] 2025-06-04 12:34:24,618 | INFO     | intersect: 12939653090.193962
[2025-06-04 08:34:39] 2025-06-04 12:34:24,618 | INFO     | chi2: 0.03391386705006423
[2025-06-04 08:34:39] 2025-06-04 12:34:24,619 | INFO     | current chi2=0.03391386705006423 (change=51.91910790006942 %)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,619 | INFO     | sum of square deviations: 1177154662.6666653
[2025-06-04 08:34:39] 2025-06-04 12:34:24,620 | INFO     | sum of deviations: -7890961901.333333
[2025-06-04 08:34:39] 2025-06-04 12:34:24,620 | INFO     | mean x: 1749035677.6666667
[2025-06-04 08:34:39] 2025-06-04 12:34:24,620 | INFO     | mean y: 2580249.4743589745
[2025-06-04 08:34:39] 2025-06-04 12:34:24,620 | INFO     | -- intersect: 11727100683.581993
[2025-06-04 08:34:39] 2025-06-04 12:34:24,620 | INFO     | intersect: 11727100683.581993
[2025-06-04 08:34:39] 2025-06-04 12:34:24,621 | INFO     | chi2: 0.03293850951025039
[2025-06-04 08:34:39] 2025-06-04 12:34:24,621 | INFO     | current chi2=0.03293850951025039 (change=2.8759844413319278 %)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,621 | INFO     | left removable region: 30
[2025-06-04 08:34:39] 2025-06-04 12:34:24,621 | INFO     | sum of square deviations: 762873463.0814792
[2025-06-04 08:34:39] 2025-06-04 12:34:24,622 | INFO     | sum of deviations: 94678126.26666678
[2025-06-04 08:34:39] 2025-06-04 12:34:24,622 | INFO     | mean x: 1749035952.1703703
[2025-06-04 08:34:39] 2025-06-04 12:34:24,622 | INFO     | mean y: 2567851.466666667
[2025-06-04 08:34:39] 2025-06-04 12:34:24,623 | INFO     | -- intersect: -214500187.64906746
[2025-06-04 08:34:39] 2025-06-04 12:34:24,623 | INFO     | intersect: -214500187.64906746
[2025-06-04 08:34:39] 2025-06-04 12:34:24,623 | INFO     | chi2: 0.008832233430454016
[2025-06-04 08:34:39] 2025-06-04 12:34:24,623 | INFO     | -- intersect: -214500187.64906746
[2025-06-04 08:34:39] 2025-06-04 12:34:24,623 | INFO     | current memory leak: 0.12 B/s (using 135 data points, chi2=0.01)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,624 | INFO     | ..............................
[2025-06-04 08:34:39] 2025-06-04 12:34:24,624 | INFO     | . Timing measurements:
[2025-06-04 08:34:39] 2025-06-04 12:34:24,624 | INFO     | . get job = 0 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,624 | INFO     | . initial setup = 3 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,624 | INFO     | . payload setup = 14 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,624 | INFO     | . stage-in = 0 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,625 | INFO     | . payload execution = 10422 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,625 | INFO     | . stage-out = 1 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,625 | INFO     | . log creation = 0 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,625 | INFO     | ..............................
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | 
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | job summary report
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | --------------------------------------------------
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | PanDA job id: 6678313270
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | task id: 45006595
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | errors: (none)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | pilot state: finished 
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | transexitcode: 0
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | exeerrorcode: 0
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | exeerrordiag: 
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | exitcode: 0
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | exitmsg: OK
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | cpuconsumptiontime: 45821 s
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | nevents: 400
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | neventsw: 0
[2025-06-04 08:34:39] 2025-06-04 12:34:24,773 | INFO     | pid: 14670
[2025-06-04 08:34:39] 2025-06-04 12:34:24,796 | INFO     | pgrp: 14670
[2025-06-04 08:34:39] 2025-06-04 12:34:24,796 | INFO     | corecount: 10
[2025-06-04 08:34:39] 2025-06-04 12:34:24,796 | INFO     | event service: False
[2025-06-04 08:34:39] 2025-06-04 12:34:24,797 | INFO     | sizes: {0: 2405013, 1: 2405212, 8: 2405418, 11: 2405446, 10439: 2434300, 10441: 2443241, 10443: 2443425, 10454: 2443595}
[2025-06-04 08:34:39] 2025-06-04 12:34:24,797 | INFO     | --------------------------------------------------
[2025-06-04 08:34:39] 2025-06-04 12:34:24,797 | INFO     | 
[2025-06-04 08:34:39] 2025-06-04 12:34:24,797 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:34:39] 2025-06-04 12:34:24,829 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,830 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,831 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,831 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,831 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,831 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:34:39] 2025-06-04 12:34:24,834 | INFO     | job 6678313270 has completed (purged errors)
[2025-06-04 08:34:39] 2025-06-04 12:34:24,834 | INFO     | overall cleanup function is called
[2025-06-04 08:34:39] 2025-06-04 12:34:25,841 | INFO     | --- collectZombieJob: --- 10, [14670]
[2025-06-04 08:34:39] 2025-06-04 12:34:25,842 | INFO     | zombie collector waiting for pid 14670
[2025-06-04 08:34:39] 2025-06-04 12:34:25,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:34:39] 2025-06-04 12:34:25,842 | INFO     | collected zombie processes
[2025-06-04 08:34:39] 2025-06-04 12:34:25,842 | INFO     | will attempt to kill all subprocesses of pid=14670
[2025-06-04 08:34:39] 2025-06-04 12:34:26,176 | INFO     | process IDs to be killed: [14670] (in reverse order)
[2025-06-04 08:34:39] 2025-06-04 12:34:26,359 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:34:39] 2025-06-04 12:34:26,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:34:39] 2025-06-04 12:34:26,410 | INFO     | did not find any defunct processes belonging to 14670
[2025-06-04 08:34:39] 2025-06-04 12:34:26,448 | INFO     | did not find any defunct processes belonging to 14670
[2025-06-04 08:34:39] 2025-06-04 12:34:26,449 | INFO     | ready for new job
[2025-06-04 08:34:39] 2025-06-04 12:34:26,449 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:34:39] 2025-06-04 12:34:26,451 | INFO     | **************************************
[2025-06-04 08:34:39] 2025-06-04 12:34:26,451 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:34:39] 2025-06-04 12:34:26,451 | INFO     | **************************************
[2025-06-04 08:34:39] 2025-06-04 12:34:26,451 | INFO     | 
[2025-06-04 08:34:39] 2025-06-04 12:34:26,455 | INFO     | architecture information:
[2025-06-04 08:34:39] 2025-06-04 12:34:26,456 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:34:39] 2025-06-04 12:34:26,489 | INFO     | cat /etc/os-release:
[2025-06-04 08:34:39] NAME="CentOS Linux"
[2025-06-04 08:34:39] VERSION="7 (Core)"
[2025-06-04 08:34:39] ID="centos"
[2025-06-04 08:34:39] ID_LIKE="rhel fedora"
[2025-06-04 08:34:39] VERSION_ID="7"
[2025-06-04 08:34:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:34:39] ANSI_COLOR="0;31"
[2025-06-04 08:34:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:34:39] HOME_URL="https://www.centos.org/"
[2025-06-04 08:34:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:34:39] 
[2025-06-04 08:34:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:34:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:34:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:34:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:34:39] 
[2025-06-04 08:34:39] 2025-06-04 12:34:26,489 | INFO     | **************************************
[2025-06-04 08:34:39] 2025-06-04 12:34:26,992 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:34:39] 2025-06-04 12:34:27,016 | INFO     | sufficient remaining disk space (56784584704 B)
[2025-06-04 08:34:39] 2025-06-04 12:34:27,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:34:39] 2025-06-04 12:34:27,016 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:34:39] 2025-06-04 12:34:27,017 | INFO     | update_server=False
[2025-06-04 08:34:39] 2025-06-04 12:34:27,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:34:39] 2025-06-04 12:34:27,017 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:34:39] 2025-06-04 12:34:27,017 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:34:39] 2025-06-04 12:34:27,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:34:39] 2025-06-04 12:34:27,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:34:39] 2025-06-04 12:34:27,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:34:39] 2025-06-04 12:34:27,144 | INFO     | all payload control threads have been joined
[2025-06-04 08:34:39] 2025-06-04 12:34:27,388 | INFO     | all job control threads have been joined
[2025-06-04 08:34:39] 2025-06-04 12:34:27,428 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:34:39] 2025-06-04 12:34:27,433 | INFO     | aborting loop
[2025-06-04 08:34:39] 2025-06-04 12:34:27,775 | INFO     | all data control threads have been joined
[2025-06-04 08:34:39] 2025-06-04 12:34:28,023 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,138 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,150 | INFO     | [payload] control thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,233 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,394 | INFO     | [job] control thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,439 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,446 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,448 | INFO     | [job] validate thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,604 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,646 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:34:39] 2025-06-04 12:34:28,782 | INFO     | [data] control thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:28,864 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:29,025 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:29,397 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:29,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:34:39] 2025-06-04 12:34:30,758 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:32,696 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:34:39] 2025-06-04 12:34:34,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377995495232)>', '<ExcThread(monitor, started 140377558337280)>']
[2025-06-04 08:34:39] 2025-06-04 12:34:35,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:34:39] 2025-06-04 12:34:35,064 | INFO     | [monitor] control thread has ended
[2025-06-04 08:34:39] 2025-06-04 12:34:39,365 | INFO     | all workflow threads have been joined
[2025-06-04 08:34:39] 2025-06-04 12:34:39,366 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:34:39] 2025-06-04 12:34:39,366 | INFO     | traces error code: 0
[2025-06-04 08:34:39] 2025-06-04 12:34:39,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:34:39] 2025-06-04 12:34:39,629 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:34:39] 2025-06-04 12:34:39,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:34:39] 2025-06-04 12:34:39,636 [wrapper] pilotpid: 29237
[2025-06-04 08:34:39] 2025-06-04 12:34:39,639 [wrapper] Pilot exit status: 0
[2025-06-04 08:34:39] 2025-06-04 12:34:39,655 [wrapper] pandaids: 6678313270
[2025-06-04 08:34:39] 2025-06-04 12:34:39,804 [wrapper] cleanup supervisor_pilot 20132 29238
[2025-06-04 08:34:39] 2025-06-04 12:34:39,808 [wrapper] Test setup, not cleaning
[2025-06-04 08:34:39] 2025-06-04 12:34:39,815 [wrapper] apfmon messages muted
[2025-06-04 08:34:39] 2025-06-04 12:34:39,818 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:34:39] 2025-06-04 12:34:39,821 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:34:39]  *** Error codes and diagnostics ***
[2025-06-04 08:34:39]     "exeErrorCode": 0,
[2025-06-04 08:34:39]     "exeErrorDiag": "",
[2025-06-04 08:34:39]     "pilotErrorCode": 0,
[2025-06-04 08:34:39]     "pilotErrorDiag": "",
[2025-06-04 08:34:39]  *** Listing of results directory ***
[2025-06-04 08:34:40] total 394944
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 08:34:40] -rwx------ 1 boincer umatlas     37140 Jun  4 00:21 runpilot2-wrapper.sh
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 00:21 queuedata.json
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas       100 Jun  4 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:34:40] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 05:39 run_atlas
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas       105 Jun  4 05:39 job.xml
[2025-06-04 08:34:40] -rw-r--r-- 2 boincer umatlas 219518676 Jun  4 05:39 EVNT.45006593._002097.pool.root.1
[2025-06-04 08:34:40] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:39 start_atlas.sh
[2025-06-04 08:34:40] drwxrwx--x 2 boincer umatlas      4096 Jun  4 05:39 shared
[2025-06-04 08:34:40] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 05:39 input.tar.gz
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas         0 Jun  4 05:39 boinc_lockfile
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 05:39 pandaJob.out
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas    986766 Jun  4 05:39 agis_schedconf.cvmfs.json
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas   1603667 Jun  4 05:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:34:40] drwx------ 4 boincer umatlas      4096 Jun  4 05:39 pilot3
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas      6227 Jun  4 08:31 init_data.xml
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas 178486051 Jun  4 08:33 HITS.45006595._052364.pool.root.1
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas       531 Jun  4 08:33 boinc_task_state.xml
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas        95 Jun  4 08:33 pilot_heartbeat.json
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas      1075 Jun  4 08:34 memory_monitor_summary.json
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas    390642 Jun  4 08:34 log.45006595._052364.job.log.tgz.1
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas      7751 Jun  4 08:34 heartbeat.json
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 08:34 boinc_mmap_file
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas        28 Jun  4 08:34 wrapper_checkpoint.txt
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas      4476 Jun  4 08:34 pilotlog.txt
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas    902141 Jun  4 08:34 log.45006595._052364.job.log.1
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas       357 Jun  4 08:34 output.list
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas       620 Jun  4 08:34 runtime_log
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas   1310720 Jun  4 08:34 result.tar.gz
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas      8657 Jun  4 08:34 runtime_log.err
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas       661 Jun  4 08:34 DiWNDm5nug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDDnKDmO3sLhm.diag
[2025-06-04 08:34:40] -rw-r--r-- 1 boincer umatlas     20943 Jun  4 08:34 stderr.txt
[2025-06-04 08:34:40] HITS file was successfully produced:
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas 178486051 Jun  4 08:33 shared/HITS.pool.root.1
[2025-06-04 08:34:40]  *** Contents of shared directory: ***
[2025-06-04 08:34:40] total 390480
[2025-06-04 08:34:40] -rw-r--r-- 2 boincer umatlas 219518676 Jun  4 05:39 ATLAS.root_0
[2025-06-04 08:34:40] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:39 start_atlas.sh
[2025-06-04 08:34:40] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 05:39 input.tar.gz
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas 178486051 Jun  4 08:33 HITS.pool.root.1
[2025-06-04 08:34:40] -rw------- 1 boincer umatlas   1310720 Jun  4 08:34 result.tar.gz
08:34:41 (25222): run_atlas exited; CPU time 45877.745471
08:34:41 (25222): called boinc_finish(0)

</stderr_txt>
]]>

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