Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:20:54 (1042722): wrapper (7.7.26015): starting
11:20:54 (1042722): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 11:20:54] Arguments: --nthreads 12
[2025-06-04 11:20:54] Threads: 12
[2025-06-04 11:20:54] Checking for CVMFS
[2025-06-04 11:20:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:20:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:20:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:21:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:21:01] 2.12.7.0 29207 1841 76856 146779 3 183 4082181 4096000 16541 130560 17 24098382 99.999 470946 153 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 11:21:01] CVMFS is ok
[2025-06-04 11:21:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:21:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 11:21:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 11:21:01] Further information can be found at the LHC@home message board.
[2025-06-04 11:21:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:21:01] Checking for apptainer binary...
[2025-06-04 11:21:01] apptainer is not installed, using version from CVMFS
[2025-06-04 11:21:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:21:03] epyc7v12
[2025-06-04 11:21:03] apptainer works
[2025-06-04 11:21:03] Set ATHENA_PROC_NUMBER=12
[2025-06-04 11:21:03] Set ATHENA_CORE_NUMBER=12
[2025-06-04 11:21:04] Starting ATLAS job with PandaID=6678247816
[2025-06-04 11:21:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:26:48]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:26:48] 2025-06-04 13:26:28,288 | INFO     | mean x: 1749040201.5092592
[2025-06-04 13:26:48] 2025-06-04 13:26:28,288 | INFO     | mean y: 2471347.8333333335
[2025-06-04 13:26:48] 2025-06-04 13:26:28,288 | INFO     | -- intersect: -260030966898.7777
[2025-06-04 13:26:48] 2025-06-04 13:26:28,288 | INFO     | intersect: -260030966898.7777
[2025-06-04 13:26:48] 2025-06-04 13:26:28,288 | INFO     | chi2: 5.015105264579772
[2025-06-04 13:26:48] 2025-06-04 13:26:28,289 | INFO     | current chi2=5.015105264579772 (change=55.152462987881755 %)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,289 | INFO     | sum of square deviations: 338801320.99029166
[2025-06-04 13:26:48] 2025-06-04 13:26:28,293 | INFO     | sum of deviations: 24452347052.951454
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | mean x: 1749040354.0097086
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | mean y: 2570172.0485436893
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | -- intersect: -126231122249.3809
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | intersect: -126231122249.3809
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | chi2: 1.212497802128277
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | current chi2=1.212497802128277 (change=75.82308370091859 %)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,294 | INFO     | sum of square deviations: 291814088.48979646
[2025-06-04 13:26:48] 2025-06-04 13:26:28,295 | INFO     | sum of deviations: 7492778331.551019
[2025-06-04 13:26:48] 2025-06-04 13:26:28,295 | INFO     | mean x: 1749040506.510204
[2025-06-04 13:26:48] 2025-06-04 13:26:28,295 | INFO     | mean y: 2624659.948979592
[2025-06-04 13:26:48] 2025-06-04 13:26:28,295 | INFO     | -- intersect: -44906697148.353325
[2025-06-04 13:26:48] 2025-06-04 13:26:28,295 | INFO     | intersect: -44906697148.353325
[2025-06-04 13:26:48] 2025-06-04 13:26:28,296 | INFO     | chi2: 0.21994273003532613
[2025-06-04 13:26:48] 2025-06-04 13:26:28,296 | INFO     | current chi2=0.21994273003532613 (change=81.86036051782821 %)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,296 | INFO     | sum of square deviations: 249385080.98924753
[2025-06-04 13:26:48] 2025-06-04 13:26:28,296 | INFO     | sum of deviations: 961424152.7096775
[2025-06-04 13:26:48] 2025-06-04 13:26:28,297 | INFO     | mean x: 1749040659.0107527
[2025-06-04 13:26:48] 2025-06-04 13:26:28,297 | INFO     | mean y: 2648052.290322581
[2025-06-04 13:26:48] 2025-06-04 13:26:28,297 | INFO     | -- intersect: -6740216945.783444
[2025-06-04 13:26:48] 2025-06-04 13:26:28,297 | INFO     | intersect: -6740216945.783444
[2025-06-04 13:26:48] 2025-06-04 13:26:28,297 | INFO     | chi2: 0.08711290789394827
[2025-06-04 13:26:48] 2025-06-04 13:26:28,297 | INFO     | current chi2=0.08711290789394827 (change=60.39291324611793 %)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,298 | INFO     | sum of square deviations: 211281735.98863629
[2025-06-04 13:26:48] 2025-06-04 13:26:28,298 | INFO     | sum of deviations: -2722115675.2840915
[2025-06-04 13:26:48] 2025-06-04 13:26:28,298 | INFO     | mean x: 1749040811.5113637
[2025-06-04 13:26:48] 2025-06-04 13:26:28,298 | INFO     | mean y: 2662528.784090909
[2025-06-04 13:26:48] 2025-06-04 13:26:28,298 | INFO     | -- intersect: 22536988022.88532
[2025-06-04 13:26:48] 2025-06-04 13:26:28,299 | INFO     | intersect: 22536988022.88532
[2025-06-04 13:26:48] 2025-06-04 13:26:28,299 | INFO     | chi2: 0.009440793592160577
[2025-06-04 13:26:48] 2025-06-04 13:26:28,299 | INFO     | current chi2=0.009440793592160577 (change=89.16257783099853 %)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,299 | INFO     | sum of square deviations: 177271490.98795226
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | sum of deviations: -2038692631.8072288
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | mean x: 1749040964.0120482
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | mean y: 2659420.807228916
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | -- intersect: 20117325948.3354
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | intersect: 20117325948.3354
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | chi2: 0.008764341873677585
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | current chi2=0.008764341873677585 (change=7.16519974596947 %)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,300 | INFO     | left removable region: 60
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | sum of square deviations: 32179208.0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | sum of deviations: 223761481.0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | mean x: 1749041696.0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | mean y: 2645651.829787234
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | -- intersect: -12159498308.571968
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | intersect: -12159498308.571968
[2025-06-04 13:26:48] 2025-06-04 13:26:28,301 | INFO     | chi2: 3.469961673039601e-05
[2025-06-04 13:26:48] 2025-06-04 13:26:28,302 | INFO     | -- intersect: -12159498308.571968
[2025-06-04 13:26:48] 2025-06-04 13:26:28,302 | INFO     | current memory leak: 6.95 B/s (using 47 data points, chi2=0.00)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,302 | INFO     | ..............................
[2025-06-04 13:26:48] 2025-06-04 13:26:28,302 | INFO     | . Timing measurements:
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . get job = 0 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . initial setup = 9 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . payload setup = 153 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . stage-in = 0 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . payload execution = 6963 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . stage-out = 2 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | . log creation = 0 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,303 | INFO     | ..............................
[2025-06-04 13:26:48] 2025-06-04 13:26:28,949 | INFO     | 
[2025-06-04 13:26:48] 2025-06-04 13:26:28,949 | INFO     | job summary report
[2025-06-04 13:26:48] 2025-06-04 13:26:28,949 | INFO     | --------------------------------------------------
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | PanDA job id: 6678247816
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | task id: 45006595
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | errors: (none)
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | pilot state: finished 
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | transexitcode: 0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | exeerrorcode: 0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | exeerrordiag: 
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | exitcode: 0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,950 | INFO     | exitmsg: OK
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | cpuconsumptiontime: 38067 s
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | nevents: 400
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | neventsw: 0
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | pid: 1066877
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | pgrp: 1066877
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | corecount: 12
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | event service: False
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | sizes: {0: 2404356, 1: 2404981, 2: 2405093, 3: 2405292, 14: 2405292, 25: 2405320, 35: 2405476, 46: 2405504, 57: 2405532, 68: 2405560, 79: 2405588, 83: 2406130, 90:
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | --------------------------------------------------
[2025-06-04 13:26:48] 2025-06-04 13:26:28,951 | INFO     | 
[2025-06-04 13:26:48] 2025-06-04 13:26:28,952 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/15
[2025-06-04 13:26:48] 2025-06-04 13:26:29,038 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,040 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:26:48] 2025-06-04 13:26:29,041 | INFO     | job 6678247816 has completed (purged errors)
[2025-06-04 13:26:48] 2025-06-04 13:26:29,041 | INFO     | overall cleanup function is called
[2025-06-04 13:26:48] 2025-06-04 13:26:30,053 | INFO     | --- collectZombieJob: --- 10, [1066877]
[2025-06-04 13:26:48] 2025-06-04 13:26:30,054 | INFO     | zombie collector waiting for pid 1066877
[2025-06-04 13:26:48] 2025-06-04 13:26:30,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:26:48] 2025-06-04 13:26:30,054 | INFO     | collected zombie processes
[2025-06-04 13:26:48] 2025-06-04 13:26:30,054 | INFO     | will attempt to kill all subprocesses of pid=1066877
[2025-06-04 13:26:48] 2025-06-04 13:26:31,104 | INFO     | process IDs to be killed: [1066877] (in reverse order)
[2025-06-04 13:26:48] 2025-06-04 13:26:33,438 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:26:48] 2025-06-04 13:26:33,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:26:48] 2025-06-04 13:26:33,473 | INFO     | did not find any defunct processes belonging to 1066877
[2025-06-04 13:26:48] 2025-06-04 13:26:33,511 | INFO     | did not find any defunct processes belonging to 1066877
[2025-06-04 13:26:48] 2025-06-04 13:26:33,511 | INFO     | ready for new job
[2025-06-04 13:26:48] 2025-06-04 13:26:33,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:26:48] 2025-06-04 13:26:33,513 | INFO     | **************************************
[2025-06-04 13:26:48] 2025-06-04 13:26:33,517 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:26:48] 2025-06-04 13:26:33,517 | INFO     | **************************************
[2025-06-04 13:26:48] 2025-06-04 13:26:33,518 | INFO     | 
[2025-06-04 13:26:48] 2025-06-04 13:26:33,551 | INFO     | architecture information:
[2025-06-04 13:26:48] 2025-06-04 13:26:33,552 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:26:48] 2025-06-04 13:26:33,654 | INFO     | cat /etc/os-release:
[2025-06-04 13:26:48] NAME="CentOS Linux"
[2025-06-04 13:26:48] VERSION="7 (Core)"
[2025-06-04 13:26:48] ID="centos"
[2025-06-04 13:26:48] ID_LIKE="rhel fedora"
[2025-06-04 13:26:48] VERSION_ID="7"
[2025-06-04 13:26:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:26:48] ANSI_COLOR="0;31"
[2025-06-04 13:26:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:26:48] HOME_URL="https://www.centos.org/"
[2025-06-04 13:26:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:26:48] 
[2025-06-04 13:26:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:26:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:26:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:26:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:26:48] 
[2025-06-04 13:26:48] 2025-06-04 13:26:33,654 | INFO     | **************************************
[2025-06-04 13:26:48] 2025-06-04 13:26:34,158 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/15
[2025-06-04 13:26:48] 2025-06-04 13:26:34,254 | INFO     | sufficient remaining disk space (315247034368 B)
[2025-06-04 13:26:48] 2025-06-04 13:26:34,255 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:26:48] 2025-06-04 13:26:34,255 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:26:48] 2025-06-04 13:26:34,255 | INFO     | update_server=False
[2025-06-04 13:26:48] 2025-06-04 13:26:34,255 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:26:48] 2025-06-04 13:26:34,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:26:48] 2025-06-04 13:26:34,377 | INFO     | all data control threads have been joined
[2025-06-04 13:26:48] 2025-06-04 13:26:34,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:26:48] 2025-06-04 13:26:34,763 | INFO     | aborting loop
[2025-06-04 13:26:48] 2025-06-04 13:26:35,266 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,274 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,281 | INFO     | all payload control threads have been joined
[2025-06-04 13:26:48] 2025-06-04 13:26:35,390 | INFO     | [data] control thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,474 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,489 | INFO     | all job control threads have been joined
[2025-06-04 13:26:48] 2025-06-04 13:26:35,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:26:48] 2025-06-04 13:26:35,650 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,758 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,802 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,814 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:35,955 | INFO     | PID=1046880 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 13:26:48] 2025-06-04 13:26:35,957 | INFO     | .. there are 20 such processes running
[2025-06-04 13:26:48] 2025-06-04 13:26:35,957 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:26:48] 2025-06-04 13:26:35,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:26:48] 2025-06-04 13:26:35,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:26:48] 2025-06-04 13:26:36,265 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:26:48] 2025-06-04 13:26:36,282 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:36,285 | INFO     | [payload] control thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:36,349 | INFO     | [job] validate thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:36,493 | INFO     | [job] control thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:36,529 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:36,737 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:37,569 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:40,281 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:26:48] 2025-06-04 13:26:41,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140676266366784)>', '<ExcThread(monitor, started 140675966277376)>']
[2025-06-04 13:26:48] 2025-06-04 13:26:41,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:26:48] 2025-06-04 13:26:41,998 | INFO     | [monitor] control thread has ended
[2025-06-04 13:26:48] 2025-06-04 13:26:46,281 | INFO     | all workflow threads have been joined
[2025-06-04 13:26:48] 2025-06-04 13:26:46,282 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:26:48] 2025-06-04 13:26:46,282 | INFO     | traces error code: 0
[2025-06-04 13:26:48] 2025-06-04 13:26:46,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:26:48] 2025-06-04 13:26:46,614 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:26:48] 2025-06-04 13:26:46,657 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:26:48] 2025-06-04 13:26:46,701 [wrapper] pilotpid: 1046880
[2025-06-04 13:26:48] 2025-06-04 13:26:46,734 [wrapper] Pilot exit status: 0
[2025-06-04 13:26:48] 2025-06-04 13:26:46,949 [wrapper] pandaids: 6678247816
[2025-06-04 13:26:48] 2025-06-04 13:26:47,299 [wrapper] cleanup supervisor_pilot 1635684 1046881
[2025-06-04 13:26:48] 2025-06-04 13:26:47,340 [wrapper] Test setup, not cleaning
[2025-06-04 13:26:48] 2025-06-04 13:26:47,394 [wrapper] apfmon messages muted
[2025-06-04 13:26:48] 2025-06-04 13:26:47,434 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:26:48] 2025-06-04 13:26:47,470 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:26:48]  *** Error codes and diagnostics ***
[2025-06-04 13:26:48]     "exeErrorCode": 0,
[2025-06-04 13:26:48]     "exeErrorDiag": "",
[2025-06-04 13:26:48]     "pilotErrorCode": 0,
[2025-06-04 13:26:48]     "pilotErrorDiag": "",
[2025-06-04 13:26:48]  *** Listing of results directory ***
[2025-06-04 13:26:48] total 382520
[2025-06-04 13:26:48] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 13:26:48] -rw-r--r-- 1 boinc boinc      5111 Jun  4 02:13 queuedata.json
[2025-06-04 13:26:48] -rwx------ 1 boinc boinc     37140 Jun  4 02:14 runpilot2-wrapper.sh
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc       100 Jun  4 11:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:26:48] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 11:20 run_atlas
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc       105 Jun  4 11:20 job.xml
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc      6951 Jun  4 11:20 init_data.xml
[2025-06-04 13:26:48] -rw-r--r-- 2 boinc boinc 212048078 Jun  4 11:20 EVNT.45006593._002024.pool.root.1
[2025-06-04 13:26:48] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:20 start_atlas.sh
[2025-06-04 13:26:48] drwxrwx--x 2 boinc boinc      4096 Jun  4 11:20 shared
[2025-06-04 13:26:48] -rw-r--r-- 2 boinc boinc    508882 Jun  4 11:20 input.tar.gz
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc         0 Jun  4 11:20 boinc_lockfile
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc      2525 Jun  4 11:21 pandaJob.out
[2025-06-04 13:26:48] -rw------- 1 boinc boinc    986812 Jun  4 11:23 agis_schedconf.cvmfs.json
[2025-06-04 13:26:48] -rw------- 1 boinc boinc   1603667 Jun  4 11:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:26:48] drwx------ 4 boinc boinc      4096 Jun  4 11:23 pilot3
[2025-06-04 13:26:48] -rw------- 1 boinc boinc 173721747 Jun  4 13:24 HITS.45006595._050493.pool.root.1
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc       530 Jun  4 13:24 boinc_task_state.xml
[2025-06-04 13:26:48] -rw------- 1 boinc boinc      1022 Jun  4 13:25 memory_monitor_summary.json
[2025-06-04 13:26:48] -rw------- 1 boinc boinc    396000 Jun  4 13:25 log.45006595._050493.job.log.tgz.1
[2025-06-04 13:26:48] -rw------- 1 boinc boinc        95 Jun  4 13:26 pilot_heartbeat.json
[2025-06-04 13:26:48] -rw------- 1 boinc boinc      7656 Jun  4 13:26 heartbeat.json
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc        27 Jun  4 13:26 wrapper_checkpoint.txt
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 13:26 boinc_mmap_file
[2025-06-04 13:26:48] -rw------- 1 boinc boinc      4773 Jun  4 13:26 pilotlog.txt
[2025-06-04 13:26:48] -rw------- 1 boinc boinc    654739 Jun  4 13:26 log.45006595._050493.job.log.1
[2025-06-04 13:26:48] -rw------- 1 boinc boinc       357 Jun  4 13:26 output.list
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc       620 Jun  4 13:26 runtime_log
[2025-06-04 13:26:48] -rw------- 1 boinc boinc   1064960 Jun  4 13:26 result.tar.gz
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc      8977 Jun  4 13:26 runtime_log.err
[2025-06-04 13:26:48] -rw------- 1 boinc boinc       651 Jun  4 13:26 C6SKDmVpsg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiqmKDmjQvXOm.diag
[2025-06-04 13:26:48] -rw-rw-r-- 1 boinc boinc     21148 Jun  4 13:26 stderr.txt
[2025-06-04 13:26:48] HITS file was successfully produced:
[2025-06-04 13:26:48] -rw------- 1 boinc boinc 173721747 Jun  4 13:24 shared/HITS.pool.root.1
[2025-06-04 13:26:48]  *** Contents of shared directory: ***
[2025-06-04 13:26:48] total 378296
[2025-06-04 13:26:48] -rw-r--r-- 2 boinc boinc 212048078 Jun  4 11:20 ATLAS.root_0
[2025-06-04 13:26:48] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:20 start_atlas.sh
[2025-06-04 13:26:48] -rw-r--r-- 2 boinc boinc    508882 Jun  4 11:20 input.tar.gz
[2025-06-04 13:26:48] -rw------- 1 boinc boinc 173721747 Jun  4 13:24 HITS.pool.root.1
[2025-06-04 13:26:48] -rw------- 1 boinc boinc   1064960 Jun  4 13:26 result.tar.gz
13:26:50 (1042722): run_atlas exited; CPU time 38465.607730
13:26:50 (1042722): called boinc_finish(0)

</stderr_txt>
]]>

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