Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:28:30 (1467584): wrapper (7.7.26015): starting
05:28:30 (1467584): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 05:28:30] Arguments: --nthreads 10
[2025-06-04 05:28:30] Threads: 10
[2025-06-04 05:28:30] Checking for CVMFS
[2025-06-04 05:28:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:28:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:28:31] 2.12.6.0 1583849 139342 448144 146775 2 273 24792829 32935936 16950 130560 1 363234138 99.629 368311086 20357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 05:28:31] CVMFS is ok
[2025-06-04 05:28:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:28:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:28:31] Further information can be found at the LHC@home message board.
[2025-06-04 05:28:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:28:31] Checking for apptainer binary...
[2025-06-04 05:28:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:28:31] Running /usr/bin/apptainer --version
[2025-06-04 05:28:31] apptainer version 1.4.1-1.el9
[2025-06-04 05:28:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:28:31] c-6-7.aglt2.org
[2025-06-04 05:28:31] apptainer works
[2025-06-04 05:28:31] Set ATHENA_PROC_NUMBER=10
[2025-06-04 05:28:31] Set ATHENA_CORE_NUMBER=10
[2025-06-04 05:28:31] Starting ATLAS job with PandaID=6678313569
[2025-06-04 05:28:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:13:06 (2072170): wrapper (7.7.26015): starting
07:13:06 (2072170): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 07:13:06] Arguments: --nthreads 10
[2025-06-04 07:13:06] Threads: 10
[2025-06-04 07:13:06] This job has been restarted, cleaning up previous attempt
[2025-06-04 07:13:06] Checking for CVMFS
[2025-06-04 07:13:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:13:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:13:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:13:07] 2.12.6.0 1583849 139447 442172 146778 2 111 25391055 32935937 18043 130560 1 363757771 99.629 368544283 20362 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:13:07] CVMFS is ok
[2025-06-04 07:13:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:13:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:13:07] Further information can be found at the LHC@home message board.
[2025-06-04 07:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:13:07] Checking for apptainer binary...
[2025-06-04 07:13:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:13:07] Running /usr/bin/apptainer --version
[2025-06-04 07:13:07] apptainer version 1.4.1-1.el9
[2025-06-04 07:13:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:13:07] c-6-7.aglt2.org
[2025-06-04 07:13:07] apptainer works
[2025-06-04 07:13:07] Set ATHENA_PROC_NUMBER=10
[2025-06-04 07:13:07] Set ATHENA_CORE_NUMBER=10
[2025-06-04 07:13:07] Starting ATLAS job with PandaID=6678313569
[2025-06-04 07:13:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:17:58]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:17:58] 2025-06-04 13:17:43,663 | INFO     | sum of deviations: 36366232377.80321
[2025-06-04 09:17:58] 2025-06-04 13:17:43,663 | INFO     | mean x: 1749039315.9262295
[2025-06-04 09:17:58] 2025-06-04 13:17:43,663 | INFO     | mean y: 2205436.3114754097
[2025-06-04 09:17:58] 2025-06-04 13:17:43,664 | INFO     | -- intersect: -112961591322.69495
[2025-06-04 09:17:58] 2025-06-04 13:17:43,664 | INFO     | intersect: -112961591322.69495
[2025-06-04 09:17:58] 2025-06-04 13:17:43,664 | INFO     | chi2: 4.2926227167598805
[2025-06-04 09:17:58] 2025-06-04 13:17:43,664 | INFO     | sum of square deviations: 496637276.63247854
[2025-06-04 09:17:58] 2025-06-04 13:17:43,665 | INFO     | sum of deviations: 36391006321.71795
[2025-06-04 09:17:58] 2025-06-04 13:17:43,665 | INFO     | mean x: 1749039163.4273505
[2025-06-04 09:17:58] 2025-06-04 13:17:43,665 | INFO     | mean y: 2205423.0256410255
[2025-06-04 09:17:58] 2025-06-04 13:17:43,665 | INFO     | -- intersect: -128158321883.34233
[2025-06-04 09:17:58] 2025-06-04 13:17:43,666 | INFO     | intersect: -128158321883.34233
[2025-06-04 09:17:58] 2025-06-04 13:17:43,666 | INFO     | chi2: 4.273444519194018
[2025-06-04 09:17:58] 2025-06-04 13:17:43,666 | INFO     | current chi2=4.273444519194018 (change=0.44677109616422084 %)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,666 | INFO     | right removable region: 116
[2025-06-04 09:17:58] 2025-06-04 13:17:43,666 | INFO     | sum of square deviations: 496620074.8888894
[2025-06-04 09:17:58] 2025-06-04 13:17:43,667 | INFO     | sum of deviations: 8308819136.1111145
[2025-06-04 09:17:58] 2025-06-04 13:17:43,667 | INFO     | mean x: 1749039468.4444444
[2025-06-04 09:17:58] 2025-06-04 13:17:43,667 | INFO     | mean y: 2269600.247863248
[2025-06-04 09:17:58] 2025-06-04 13:17:43,667 | INFO     | -- intersect: -29260447192.818165
[2025-06-04 09:17:58] 2025-06-04 13:17:43,668 | INFO     | intersect: -29260447192.818165
[2025-06-04 09:17:58] 2025-06-04 13:17:43,668 | INFO     | chi2: 1.4770973047965181
[2025-06-04 09:17:58] 2025-06-04 13:17:43,668 | INFO     | current chi2=1.4770973047965181 (change=65.58986423313141 %)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,668 | INFO     | sum of square deviations: 435617023.8571427
[2025-06-04 09:17:58] 2025-06-04 13:17:43,669 | INFO     | sum of deviations: -11111880978.857145
[2025-06-04 09:17:58] 2025-06-04 13:17:43,669 | INFO     | mean x: 1749039620.9642856
[2025-06-04 09:17:58] 2025-06-04 13:17:43,669 | INFO     | mean y: 2318019.035714286
[2025-06-04 09:17:58] 2025-06-04 13:17:43,669 | INFO     | -- intersect: 44617470850.69859
[2025-06-04 09:17:58] 2025-06-04 13:17:43,669 | INFO     | intersect: 44617470850.69859
[2025-06-04 09:17:58] 2025-06-04 13:17:43,670 | INFO     | chi2: 0.1478930253538089
[2025-06-04 09:17:58] 2025-06-04 13:17:43,670 | INFO     | current chi2=0.1478930253538089 (change=89.98759087342711 %)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,670 | INFO     | sum of square deviations: 379830204.69158804
[2025-06-04 09:17:58] 2025-06-04 13:17:43,671 | INFO     | sum of deviations: -12797947570.02802
[2025-06-04 09:17:58] 2025-06-04 13:17:43,671 | INFO     | mean x: 1749039773.4766355
[2025-06-04 09:17:58] 2025-06-04 13:17:43,671 | INFO     | mean y: 2322436.5887850467
[2025-06-04 09:17:58] 2025-06-04 13:17:43,671 | INFO     | -- intersect: 58934232122.452156
[2025-06-04 09:17:58] 2025-06-04 13:17:43,671 | INFO     | intersect: 58934232122.452156
[2025-06-04 09:17:58] 2025-06-04 13:17:43,671 | INFO     | chi2: 0.08280918210886412
[2025-06-04 09:17:58] 2025-06-04 13:17:43,672 | INFO     | current chi2=0.08280918210886412 (change=44.007378366385275 %)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,672 | INFO     | sum of square deviations: 329020100.99019575
[2025-06-04 09:17:58] 2025-06-04 13:17:43,672 | INFO     | sum of deviations: -11927084801.098034
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | mean x: 1749039925.990196
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | mean y: 2319775.901960784
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | -- intersect: 63405581324.38991
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | intersect: 63405581324.38991
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | chi2: 0.07875585451642007
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | current chi2=0.07875585451642007 (change=4.894780372441534 %)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,673 | INFO     | left removable region: 40
[2025-06-04 09:17:58] 2025-06-04 13:17:43,674 | INFO     | sum of square deviations: 136080234.0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,674 | INFO     | sum of deviations: -4517422938.000001
[2025-06-04 09:17:58] 2025-06-04 13:17:43,674 | INFO     | mean x: 1749040353.0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,674 | INFO     | mean y: 2300678.5921052634
[2025-06-04 09:17:58] 2025-06-04 13:17:43,674 | INFO     | -- intersect: 58064774396.33879
[2025-06-04 09:17:58] 2025-06-04 13:17:43,675 | INFO     | intersect: 58064774396.33879
[2025-06-04 09:17:58] 2025-06-04 13:17:43,675 | INFO     | chi2: 0.06862793106098272
[2025-06-04 09:17:58] 2025-06-04 13:17:43,675 | INFO     | -- intersect: 58064774396.33879
[2025-06-04 09:17:58] 2025-06-04 13:17:43,675 | INFO     | current memory leak: -33.20 B/s (using 76 data points, chi2=0.07)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | ..............................
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | . Timing measurements:
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | . get job = 0 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | . initial setup = 1 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | . payload setup = 7 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | . stage-in = 0 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,676 | INFO     | . payload execution = 7429 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,677 | INFO     | . stage-out = 2 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,677 | INFO     | . log creation = 0 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,677 | INFO     | ..............................
[2025-06-04 09:17:58] 2025-06-04 13:17:43,790 | INFO     | 
[2025-06-04 09:17:58] 2025-06-04 13:17:43,790 | INFO     | job summary report
[2025-06-04 09:17:58] 2025-06-04 13:17:43,790 | INFO     | --------------------------------------------------
[2025-06-04 09:17:58] 2025-06-04 13:17:43,790 | INFO     | PanDA job id: 6678313569
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | task id: 45006595
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | errors: (none)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | pilot state: finished 
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | transexitcode: 0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | exeerrorcode: 0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | exeerrordiag: 
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | exitcode: 0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | exitmsg: OK
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | cpuconsumptiontime: 42827 s
[2025-06-04 09:17:58] 2025-06-04 13:17:43,791 | INFO     | nevents: 400
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | neventsw: 0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | pid: 2084052
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | pgrp: 2084052
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | corecount: 10
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | event service: False
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | sizes: {0: 2405184, 1: 2405184, 5: 2405418, 11: 2405474, 7440: 2432916, 7443: 2442910, 7445: 2443094, 7452: 2443264}
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | --------------------------------------------------
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | 
[2025-06-04 09:17:58] 2025-06-04 13:17:43,792 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 09:17:58] 2025-06-04 13:17:43,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,817 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,817 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,818 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,820 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:17:58] 2025-06-04 13:17:43,820 | INFO     | job 6678313569 has completed (purged errors)
[2025-06-04 09:17:58] 2025-06-04 13:17:43,820 | INFO     | overall cleanup function is called
[2025-06-04 09:17:58] 2025-06-04 13:17:44,830 | INFO     | --- collectZombieJob: --- 10, [2084052]
[2025-06-04 09:17:58] 2025-06-04 13:17:44,830 | INFO     | zombie collector waiting for pid 2084052
[2025-06-04 09:17:58] 2025-06-04 13:17:44,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:17:58] 2025-06-04 13:17:44,830 | INFO     | collected zombie processes
[2025-06-04 09:17:58] 2025-06-04 13:17:44,831 | INFO     | will attempt to kill all subprocesses of pid=2084052
[2025-06-04 09:17:58] 2025-06-04 13:17:45,183 | INFO     | process IDs to be killed: [2084052] (in reverse order)
[2025-06-04 09:17:58] 2025-06-04 13:17:45,299 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:17:58] 2025-06-04 13:17:45,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:17:58] 2025-06-04 13:17:45,312 | INFO     | did not find any defunct processes belonging to 2084052
[2025-06-04 09:17:58] 2025-06-04 13:17:45,326 | INFO     | did not find any defunct processes belonging to 2084052
[2025-06-04 09:17:58] 2025-06-04 13:17:45,326 | INFO     | ready for new job
[2025-06-04 09:17:58] 2025-06-04 13:17:45,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:17:58] 2025-06-04 13:17:45,328 | INFO     | **************************************
[2025-06-04 09:17:58] 2025-06-04 13:17:45,329 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:17:58] 2025-06-04 13:17:45,329 | INFO     | **************************************
[2025-06-04 09:17:58] 2025-06-04 13:17:45,329 | INFO     | 
[2025-06-04 09:17:58] 2025-06-04 13:17:45,344 | INFO     | architecture information:
[2025-06-04 09:17:58] 2025-06-04 13:17:45,344 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:17:58] 2025-06-04 13:17:45,358 | INFO     | cat /etc/os-release:
[2025-06-04 09:17:58] NAME="CentOS Linux"
[2025-06-04 09:17:58] VERSION="7 (Core)"
[2025-06-04 09:17:58] ID="centos"
[2025-06-04 09:17:58] ID_LIKE="rhel fedora"
[2025-06-04 09:17:58] VERSION_ID="7"
[2025-06-04 09:17:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:17:58] ANSI_COLOR="0;31"
[2025-06-04 09:17:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:17:58] HOME_URL="https://www.centos.org/"
[2025-06-04 09:17:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:17:58] 
[2025-06-04 09:17:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:17:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:17:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:17:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:17:58] 
[2025-06-04 09:17:58] 2025-06-04 13:17:45,359 | INFO     | **************************************
[2025-06-04 09:17:58] 2025-06-04 13:17:45,861 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 09:17:58] 2025-06-04 13:17:45,880 | INFO     | sufficient remaining disk space (76597428224 B)
[2025-06-04 09:17:58] 2025-06-04 13:17:45,880 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:17:58] 2025-06-04 13:17:45,881 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:17:58] 2025-06-04 13:17:45,881 | INFO     | update_server=False
[2025-06-04 09:17:58] 2025-06-04 13:17:45,881 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:17:58] 2025-06-04 13:17:45,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:17:58] 2025-06-04 13:17:45,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:17:58] 2025-06-04 13:17:45,882 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:17:58] 2025-06-04 13:17:45,882 | INFO     | aborting loop
[2025-06-04 09:17:58] 2025-06-04 13:17:45,883 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:17:58] 2025-06-04 13:17:45,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:17:58] 2025-06-04 13:17:45,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:17:58] 2025-06-04 13:17:46,016 | INFO     | all data control threads have been joined
[2025-06-04 09:17:58] 2025-06-04 13:17:46,052 | INFO     | all job control threads have been joined
[2025-06-04 09:17:58] 2025-06-04 13:17:46,887 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:46,888 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,021 | INFO     | [data] control thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,033 | INFO     | all payload control threads have been joined
[2025-06-04 09:17:58] 2025-06-04 13:17:47,057 | INFO     | [job] control thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,582 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,613 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:17:58] 2025-06-04 13:17:47,786 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,872 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:47,887 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:48,038 | INFO     | [payload] control thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:48,084 | INFO     | [job] validate thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:48,294 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:48,313 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:48,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:17:58] 2025-06-04 13:17:49,804 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:51,699 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:17:58] 2025-06-04 13:17:53,268 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564645877568)>', '<ExcThread(monitor, started 140564297127680)>']
[2025-06-04 09:17:58] 2025-06-04 13:17:53,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:17:58] 2025-06-04 13:17:53,923 | INFO     | [monitor] control thread has ended
[2025-06-04 09:17:58] 2025-06-04 13:17:58,294 | INFO     | all workflow threads have been joined
[2025-06-04 09:17:58] 2025-06-04 13:17:58,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:17:58] 2025-06-04 13:17:58,295 | INFO     | traces error code: 0
[2025-06-04 09:17:58] 2025-06-04 13:17:58,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:17:58] 2025-06-04 13:17:58,450 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:17:58] 2025-06-04 13:17:58,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:17:58] 2025-06-04 13:17:58,457 [wrapper] pilotpid: 2075771
[2025-06-04 09:17:58] 2025-06-04 13:17:58,460 [wrapper] Pilot exit status: 0
[2025-06-04 09:17:58] 2025-06-04 13:17:58,472 [wrapper] pandaids: 6678313569 6678313569
[2025-06-04 09:17:58] 2025-06-04 13:17:58,547 [wrapper] cleanup supervisor_pilot 2846198 2075772
[2025-06-04 09:17:58] 2025-06-04 13:17:58,551 [wrapper] Test setup, not cleaning
[2025-06-04 09:17:58] 2025-06-04 13:17:58,555 [wrapper] apfmon messages muted
[2025-06-04 09:17:58] 2025-06-04 13:17:58,558 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:17:58] 2025-06-04 13:17:58,562 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:17:58]  *** Error codes and diagnostics ***
[2025-06-04 09:17:58]     "exeErrorCode": 0,
[2025-06-04 09:17:58]     "exeErrorDiag": "",
[2025-06-04 09:17:58]     "pilotErrorCode": 0,
[2025-06-04 09:17:58]     "pilotErrorDiag": "",
[2025-06-04 09:17:58]  *** Listing of results directory ***
[2025-06-04 09:17:58] total 599708
[2025-06-04 09:17:58] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 00:26 queuedata.json
[2025-06-04 09:17:58] -rwx------. 1 boincer umatlas     37140 Jun  4 00:27 runpilot2-wrapper.sh
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas       100 Jun  4 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:17:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 05:28 run_atlas
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas       105 Jun  4 05:28 job.xml
[2025-06-04 09:17:58] -rw-r--r--. 3 boincer umatlas 215725733 Jun  4 05:28 EVNT.45006593._002104.pool.root.1
[2025-06-04 09:17:58] -rw-r--r--. 3 boincer umatlas 215725733 Jun  4 05:28 ATLAS.root_0
[2025-06-04 09:17:58] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 05:28 start_atlas.sh
[2025-06-04 09:17:58] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 05:28 shared
[2025-06-04 09:17:58] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 05:28 input.tar.gz
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas         0 Jun  4 05:28 boinc_lockfile
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 07:13 pandaJob.out
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas    986812 Jun  4 07:13 agis_schedconf.cvmfs.json
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas      6659 Jun  4 09:09 init_data.xml
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas 176695928 Jun  4 09:16 HITS.45006595._052549.pool.root.1
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas       530 Jun  4 09:16 boinc_task_state.xml
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas      1042 Jun  4 09:17 memory_monitor_summary.json
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas        96 Jun  4 09:17 pilot_heartbeat.json
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas   1598969 Jun  4 09:17 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas    375237 Jun  4 09:17 log.45006595._052549.job.log.tgz.1
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas      7715 Jun  4 09:17 heartbeat.json
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas        28 Jun  4 09:17 wrapper_checkpoint.txt
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:17 boinc_mmap_file
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas      4476 Jun  4 09:17 pilotlog.txt
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas    681708 Jun  4 09:17 log.45006595._052549.job.log.1
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas       357 Jun  4 09:17 output.list
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:17 runtime_log
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas   1075200 Jun  4 09:17 result.tar.gz
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas      8731 Jun  4 09:17 runtime_log.err
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas       775 Jun  4 09:17 mWgNDmatug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8EnKDmIBdpYn.diag
[2025-06-04 09:17:58] -rw-r--r--. 1 boincer umatlas     23016 Jun  4 09:17 stderr.txt
[2025-06-04 09:17:58] HITS file was successfully produced:
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas 176695928 Jun  4 09:16 shared/HITS.pool.root.1
[2025-06-04 09:17:58]  *** Contents of shared directory: ***
[2025-06-04 09:17:58] total 384804
[2025-06-04 09:17:58] -rw-r--r--. 3 boincer umatlas 215725733 Jun  4 05:28 ATLAS.root_0
[2025-06-04 09:17:58] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 05:28 start_atlas.sh
[2025-06-04 09:17:58] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 05:28 input.tar.gz
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas 176695928 Jun  4 09:16 HITS.pool.root.1
[2025-06-04 09:17:58] -rw-------. 1 boincer umatlas   1075200 Jun  4 09:17 result.tar.gz
09:18:21 (2072170): run_atlas exited; CPU time 43100.206533
09:18:21 (2072170): called boinc_finish(0)

</stderr_txt>
]]>

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