Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:18:43 (305): wrapper (7.7.26015): starting
05:18:43 (305): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:18:43] Arguments: --nthreads 8
[2025-06-04 05:18:43] Threads: 8
[2025-06-04 05:18:43] Checking for CVMFS
[2025-06-04 05:18:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:18:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:18:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:18:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:18:44] 2.11.2.0 4905 2581 70964 146775 0 55 16241471 18432001 3665 130560 0 8013835 99.997 638692 43827 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 05:18:44] CVMFS is ok
[2025-06-04 05:18:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:18:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:18:44] Further information can be found at the LHC@home message board.
[2025-06-04 05:18:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:18:44] Checking for apptainer binary...
[2025-06-04 05:18:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:18:44] Running /usr/bin/apptainer --version
[2025-06-04 05:18:44] apptainer version 1.3.2-1.el7
[2025-06-04 05:18:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:18:45] c-211-32.aglt2.org
[2025-06-04 05:18:45] apptainer works
[2025-06-04 05:18:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 05:18:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 05:18:45] Starting ATLAS job with PandaID=6678313357
[2025-06-04 05:18:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:37:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:37:02] 2025-06-04 11:36:48,917 | INFO     | extracted standard info from prmon json
[2025-06-04 07:37:02] 2025-06-04 11:36:48,917 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:37:02] 2025-06-04 11:36:48,917 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:37:02] 2025-06-04 11:36:48,918 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:37:02] 2025-06-04 11:36:48,918 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:37:02] 2025-06-04 11:36:48,920 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:37:02] 2025-06-04 11:36:48,920 | INFO     | sum of square deviations: 779958810.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,921 | INFO     | sum of deviations: -4618165399.499995
[2025-06-04 07:37:02] 2025-06-04 11:36:48,921 | INFO     | mean x: 1749032880.5
[2025-06-04 07:37:02] 2025-06-04 11:36:48,921 | INFO     | mean y: 2486266.4485294116
[2025-06-04 07:37:02] 2025-06-04 11:36:48,921 | INFO     | -- intersect: 10358575623.67101
[2025-06-04 07:37:02] 2025-06-04 11:36:48,921 | INFO     | intersect: 10358575623.67101
[2025-06-04 07:37:02] 2025-06-04 11:36:48,921 | INFO     | chi2: 2.1793652736392355
[2025-06-04 07:37:02] 2025-06-04 11:36:48,922 | INFO     | sum of square deviations: 697054930.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,922 | INFO     | sum of deviations: 4556847802.999987
[2025-06-04 07:37:02] 2025-06-04 11:36:48,922 | INFO     | mean x: 1749032728.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,922 | INFO     | mean y: 2502653.679389313
[2025-06-04 07:37:02] 2025-06-04 11:36:48,922 | INFO     | -- intersect: -11431425435.692095
[2025-06-04 07:37:02] 2025-06-04 11:36:48,922 | INFO     | intersect: -11431425435.692095
[2025-06-04 07:37:02] 2025-06-04 11:36:48,923 | INFO     | chi2: 1.4095760282833072
[2025-06-04 07:37:02] 2025-06-04 11:36:48,923 | INFO     | current chi2=1.4095760282833072 (change=35.32171750495445 %)
[2025-06-04 07:37:02] 2025-06-04 11:36:48,923 | INFO     | sum of square deviations: 620244187.5
[2025-06-04 07:37:02] 2025-06-04 11:36:48,923 | INFO     | sum of deviations: 4606153187.999997
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | mean x: 1749032575.5
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | mean y: 2502751.619047619
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | -- intersect: -12986433115.764912
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | intersect: -12986433115.764912
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | chi2: 1.4113025457670925
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | current chi2=1.4113025457670925 (change=-0.12248487837069433 %)
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | right removable region: 125
[2025-06-04 07:37:02] 2025-06-04 11:36:48,924 | INFO     | sum of square deviations: 697054930.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,925 | INFO     | sum of deviations: -23436355306.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,925 | INFO     | mean x: 1749033033.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,925 | INFO     | mean y: 2520255.572519084
[2025-06-04 07:37:02] 2025-06-04 11:36:48,925 | INFO     | -- intersect: 58808444780.514656
[2025-06-04 07:37:02] 2025-06-04 11:36:48,925 | INFO     | intersect: 58808444780.514656
[2025-06-04 07:37:02] 2025-06-04 11:36:48,926 | INFO     | chi2: 0.8415001923554614
[2025-06-04 07:37:02] 2025-06-04 11:36:48,926 | INFO     | current chi2=0.8415001923554614 (change=61.3878314693767 %)
[2025-06-04 07:37:02] 2025-06-04 11:36:48,926 | INFO     | sum of square deviations: 620244187.5
[2025-06-04 07:37:02] 2025-06-04 11:36:48,926 | INFO     | sum of deviations: -20902654670.000004
[2025-06-04 07:37:02] 2025-06-04 11:36:48,926 | INFO     | mean x: 1749033185.5
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | mean y: 2515146.3333333335
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | -- intersect: 58946133514.1823
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | intersect: 58946133514.1823
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | chi2: 0.8322440556116081
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | current chi2=0.8322440556116081 (change=1.0999565808706746 %)
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | left removable region: 20
[2025-06-04 07:37:02] 2025-06-04 11:36:48,927 | INFO     | sum of square deviations: 358927660.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | sum of deviations: -5819146605.999994
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | mean x: 1749033155.0
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | mean y: 2521839.3619047618
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | -- intersect: 28358877400.534622
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | intersect: 28358877400.534622
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | chi2: 0.009718950357985943
[2025-06-04 07:37:02] 2025-06-04 11:36:48,928 | INFO     | -- intersect: 28358877400.534622
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | current memory leak: -16.21 B/s (using 105 data points, chi2=0.01)
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | ..............................
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | . Timing measurements:
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | . get job = 0 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | . initial setup = 2 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | . payload setup = 7 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,929 | INFO     | . stage-in = 0 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,930 | INFO     | . payload execution = 8240 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,930 | INFO     | . stage-out = 1 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,930 | INFO     | . log creation = 0 s
[2025-06-04 07:37:02] 2025-06-04 11:36:48,930 | INFO     | ..............................
[2025-06-04 07:37:02] 2025-06-04 11:36:49,500 | INFO     | 
[2025-06-04 07:37:02] 2025-06-04 11:36:49,501 | INFO     | job summary report
[2025-06-04 07:37:02] 2025-06-04 11:36:49,501 | INFO     | --------------------------------------------------
[2025-06-04 07:37:02] 2025-06-04 11:36:49,501 | INFO     | PanDA job id: 6678313357
[2025-06-04 07:37:02] 2025-06-04 11:36:49,501 | INFO     | task id: 45006595
[2025-06-04 07:37:02] 2025-06-04 11:36:49,501 | INFO     | errors: (none)
[2025-06-04 07:37:02] 2025-06-04 11:36:49,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | pilot state: finished 
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | transexitcode: 0
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | exeerrorcode: 0
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | exeerrordiag: 
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | exitcode: 0
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | exitmsg: OK
[2025-06-04 07:37:02] 2025-06-04 11:36:49,502 | INFO     | cpuconsumptiontime: 61575 s
[2025-06-04 07:37:02] 2025-06-04 11:36:49,503 | INFO     | nevents: 400
[2025-06-04 07:37:02] 2025-06-04 11:36:49,503 | INFO     | neventsw: 0
[2025-06-04 07:37:02] 2025-06-04 11:36:49,503 | INFO     | pid: 12284
[2025-06-04 07:37:02] 2025-06-04 11:36:49,507 | INFO     | pgrp: 12284
[2025-06-04 07:37:02] 2025-06-04 11:36:49,507 | INFO     | corecount: 8
[2025-06-04 07:37:02] 2025-06-04 11:36:49,507 | INFO     | event service: False
[2025-06-04 07:37:02] 2025-06-04 11:36:49,508 | INFO     | sizes: {0: 2404957, 1: 2405212, 5: 2405418, 12: 2405474, 8252: 2432999, 8253: 2441940, 8254: 2442124, 8259: 2442294}
[2025-06-04 07:37:02] 2025-06-04 11:36:49,508 | INFO     | --------------------------------------------------
[2025-06-04 07:37:02] 2025-06-04 11:36:49,508 | INFO     | 
[2025-06-04 07:37:02] 2025-06-04 11:36:49,508 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 07:37:02] 2025-06-04 11:36:49,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:37:02] 2025-06-04 11:36:49,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:37:02] 2025-06-04 11:36:49,536 | INFO     | job 6678313357 has completed (purged errors)
[2025-06-04 07:37:02] 2025-06-04 11:36:49,536 | INFO     | overall cleanup function is called
[2025-06-04 07:37:02] 2025-06-04 11:36:49,900 | INFO     | PID=4093 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 07:37:02] 2025-06-04 11:36:49,900 | INFO     | .. there are 5 such processes running
[2025-06-04 07:37:02] 2025-06-04 11:36:50,544 | INFO     | --- collectZombieJob: --- 10, [12284]
[2025-06-04 07:37:02] 2025-06-04 11:36:50,544 | INFO     | zombie collector waiting for pid 12284
[2025-06-04 07:37:02] 2025-06-04 11:36:50,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:37:02] 2025-06-04 11:36:50,545 | INFO     | collected zombie processes
[2025-06-04 07:37:02] 2025-06-04 11:36:50,545 | INFO     | will attempt to kill all subprocesses of pid=12284
[2025-06-04 07:37:02] 2025-06-04 11:36:50,784 | INFO     | process IDs to be killed: [12284] (in reverse order)
[2025-06-04 07:37:02] 2025-06-04 11:36:50,859 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:37:02] 2025-06-04 11:36:50,859 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:37:02] 2025-06-04 11:36:50,863 | INFO     | did not find any defunct processes belonging to 12284
[2025-06-04 07:37:02] 2025-06-04 11:36:50,867 | INFO     | did not find any defunct processes belonging to 12284
[2025-06-04 07:37:02] 2025-06-04 11:36:50,867 | INFO     | ready for new job
[2025-06-04 07:37:02] 2025-06-04 11:36:50,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:37:02] 2025-06-04 11:36:50,868 | INFO     | **************************************
[2025-06-04 07:37:02] 2025-06-04 11:36:50,868 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:37:02] 2025-06-04 11:36:50,868 | INFO     | **************************************
[2025-06-04 07:37:02] 2025-06-04 11:36:50,869 | INFO     | 
[2025-06-04 07:37:02] 2025-06-04 11:36:50,870 | INFO     | architecture information:
[2025-06-04 07:37:02] 2025-06-04 11:36:50,870 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:37:02] 2025-06-04 11:36:50,900 | INFO     | cat /etc/os-release:
[2025-06-04 07:37:02] NAME="CentOS Linux"
[2025-06-04 07:37:02] VERSION="7 (Core)"
[2025-06-04 07:37:02] ID="centos"
[2025-06-04 07:37:02] ID_LIKE="rhel fedora"
[2025-06-04 07:37:02] VERSION_ID="7"
[2025-06-04 07:37:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:37:02] ANSI_COLOR="0;31"
[2025-06-04 07:37:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:37:02] HOME_URL="https://www.centos.org/"
[2025-06-04 07:37:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:37:02] 
[2025-06-04 07:37:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:37:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:37:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:37:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:37:02] 
[2025-06-04 07:37:02] 2025-06-04 11:36:50,901 | INFO     | **************************************
[2025-06-04 07:37:02] 2025-06-04 11:36:51,403 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 07:37:02] 2025-06-04 11:36:51,419 | INFO     | sufficient remaining disk space (55336501248 B)
[2025-06-04 07:37:02] 2025-06-04 11:36:51,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:37:02] 2025-06-04 11:36:51,420 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:37:02] 2025-06-04 11:36:51,420 | INFO     | update_server=False
[2025-06-04 07:37:02] 2025-06-04 11:36:51,420 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:37:02] 2025-06-04 11:36:51,420 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:37:02] 2025-06-04 11:36:51,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:37:02] 2025-06-04 11:36:51,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:37:02] 2025-06-04 11:36:51,565 | INFO     | aborting loop
[2025-06-04 07:37:02] 2025-06-04 11:36:51,651 | INFO     | all payload control threads have been joined
[2025-06-04 07:37:02] 2025-06-04 11:36:51,854 | INFO     | all data control threads have been joined
[2025-06-04 07:37:02] 2025-06-04 11:36:51,907 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:37:02] 2025-06-04 11:36:51,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:37:02] 2025-06-04 11:36:51,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:37:02] 2025-06-04 11:36:52,426 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:52,435 | INFO     | all job control threads have been joined
[2025-06-04 07:37:02] 2025-06-04 11:36:52,571 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:52,657 | INFO     | [payload] control thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:52,859 | INFO     | [data] control thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,010 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,034 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,035 | INFO     | [job] validate thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,245 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,264 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,425 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,440 | INFO     | [job] control thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,769 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:53,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:54,019 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:54,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:37:02] 2025-06-04 11:36:55,091 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:55,427 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:37:02] 2025-06-04 11:36:57,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326178723648)>', '<ExcThread(monitor, started 140325733508864)>']
[2025-06-04 07:37:02] 2025-06-04 11:36:57,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:37:02] 2025-06-04 11:36:57,938 | INFO     | [monitor] control thread has ended
[2025-06-04 07:37:02] 2025-06-04 11:37:02,519 | INFO     | all workflow threads have been joined
[2025-06-04 07:37:02] 2025-06-04 11:37:02,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:37:02] 2025-06-04 11:37:02,519 | INFO     | traces error code: 0
[2025-06-04 07:37:02] 2025-06-04 11:37:02,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:37:02] 2025-06-04 11:37:02,630 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:37:02] 2025-06-04 11:37:02,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:37:02] 2025-06-04 11:37:02,635 [wrapper] pilotpid: 4093
[2025-06-04 07:37:02] 2025-06-04 11:37:02,638 [wrapper] Pilot exit status: 0
[2025-06-04 07:37:02] 2025-06-04 11:37:02,646 [wrapper] pandaids: 6678313357
[2025-06-04 07:37:02] 2025-06-04 11:37:02,680 [wrapper] cleanup supervisor_pilot 33039 4094
[2025-06-04 07:37:02] 2025-06-04 11:37:02,682 [wrapper] Test setup, not cleaning
[2025-06-04 07:37:02] 2025-06-04 11:37:02,684 [wrapper] apfmon messages muted
[2025-06-04 07:37:02] 2025-06-04 11:37:02,686 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:37:02] 2025-06-04 11:37:02,688 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:37:02]  *** Error codes and diagnostics ***
[2025-06-04 07:37:02]     "exeErrorCode": 0,
[2025-06-04 07:37:02]     "exeErrorDiag": "",
[2025-06-04 07:37:02]     "pilotErrorCode": 0,
[2025-06-04 07:37:02]     "pilotErrorDiag": "",
[2025-06-04 07:37:02]  *** Listing of results directory ***
[2025-06-04 07:37:02] total 390544
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 07:37:02] -rwx------ 1 boincer umatlas     37140 Jun  4 00:20 runpilot2-wrapper.sh
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 00:20 queuedata.json
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas       100 Jun  4 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:37:02] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 05:18 run_atlas
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas       105 Jun  4 05:18 job.xml
[2025-06-04 07:37:02] -rw-r--r-- 2 boincer umatlas 213896017 Jun  4 05:18 EVNT.45006593._002100.pool.root.1
[2025-06-04 07:37:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:18 start_atlas.sh
[2025-06-04 07:37:02] drwxrwx--x 2 boincer umatlas      4096 Jun  4 05:18 shared
[2025-06-04 07:37:02] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 05:18 input.tar.gz
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas         0 Jun  4 05:18 boinc_lockfile
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 05:18 pandaJob.out
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas    986766 Jun  4 05:18 agis_schedconf.cvmfs.json
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas   1603667 Jun  4 05:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:37:02] drwx------ 4 boincer umatlas      4096 Jun  4 05:18 pilot3
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas      6033 Jun  4 07:28 init_data.xml
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas 179952701 Jun  4 07:36 HITS.45006595._052451.pool.root.1
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas       529 Jun  4 07:36 boinc_task_state.xml
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas      1049 Jun  4 07:36 memory_monitor_summary.json
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas    352708 Jun  4 07:36 log.45006595._052451.job.log.tgz.1
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas      7739 Jun  4 07:36 heartbeat.json
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas        95 Jun  4 07:36 pilot_heartbeat.json
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 07:37 boinc_mmap_file
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas        27 Jun  4 07:37 wrapper_checkpoint.txt
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas      4353 Jun  4 07:37 pilotlog.txt
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas    764578 Jun  4 07:37 log.45006595._052451.job.log.1
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas       357 Jun  4 07:37 output.list
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas       620 Jun  4 07:37 runtime_log
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas   1136640 Jun  4 07:37 result.tar.gz
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 07:37 runtime_log.err
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas       658 Jun  4 07:37 3DTNDm6mug7n9Rq4apOajLDm4fhM0noT9bVof3QYDmChaKDmv8Bylm.diag
[2025-06-04 07:37:02] -rw-r--r-- 1 boincer umatlas     20843 Jun  4 07:37 stderr.txt
[2025-06-04 07:37:02] HITS file was successfully produced:
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas 179952701 Jun  4 07:36 shared/HITS.pool.root.1
[2025-06-04 07:37:02]  *** Contents of shared directory: ***
[2025-06-04 07:37:02] total 386252
[2025-06-04 07:37:02] -rw-r--r-- 2 boincer umatlas 213896017 Jun  4 05:18 ATLAS.root_0
[2025-06-04 07:37:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 05:18 start_atlas.sh
[2025-06-04 07:37:02] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 05:18 input.tar.gz
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas 179952701 Jun  4 07:36 HITS.pool.root.1
[2025-06-04 07:37:02] -rw------- 1 boincer umatlas   1136640 Jun  4 07:37 result.tar.gz
07:37:04 (305): run_atlas exited; CPU time 61804.161458
07:37:04 (305): called boinc_finish(0)

</stderr_txt>
]]>

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