Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:28:37 (20227): wrapper (7.7.26015): starting
19:28:37 (20227): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:28:37] Arguments: --nthreads 8
[2025-06-04 19:28:37] Threads: 8
[2025-06-04 19:28:37] Checking for CVMFS
[2025-06-04 19:28:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:28:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:28:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:28:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:28:39] 2.11.2.0 4192 33690 92568 146789 3 18 15487437 25165824 4296 130560 0 16924491 99.827 17850089 1997 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 19:28:39] CVMFS is ok
[2025-06-04 19:28:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:28:39] Checking for apptainer binary...
[2025-06-04 19:28:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:28:39] Running /usr/bin/apptainer --version
[2025-06-04 19:28:39] apptainer version 1.3.2-1.el7
[2025-06-04 19:28:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:28:54] cg-vwn295.simple-grid.lan
[2025-06-04 19:28:54] apptainer works
[2025-06-04 19:28:54] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:28:54] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:28:54] Starting ATLAS job with PandaID=6678312647
[2025-06-04 19:28:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:34:31]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:34:31] 2025-06-04 21:34:08,080 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:34:31] 2025-06-04 21:34:08,080 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:34:31] 2025-06-04 21:34:08,081 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:34:31] 2025-06-04 21:34:08,081 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:34:31] 2025-06-04 21:34:08,086 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:34:31] 2025-06-04 21:34:08,087 | INFO     | sum of square deviations: 3723716330.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,089 | INFO     | sum of deviations: 74852919684.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,098 | INFO     | mean x: 1749065798.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,099 | INFO     | mean y: 2426244.305676856
[2025-06-04 23:34:31] 2025-06-04 21:34:08,099 | INFO     | -- intersect: -35156718571.57383
[2025-06-04 23:34:31] 2025-06-04 21:34:08,099 | INFO     | intersect: -35156718571.57383
[2025-06-04 23:34:31] 2025-06-04 21:34:08,099 | INFO     | chi2: 6.327294280835632
[2025-06-04 23:34:31] 2025-06-04 21:34:08,100 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,102 | INFO     | sum of deviations: 88173549738.50005
[2025-06-04 23:34:31] 2025-06-04 21:34:08,102 | INFO     | mean x: 1749065645.5
[2025-06-04 23:34:31] 2025-06-04 21:34:08,102 | INFO     | mean y: 2434586.308035714
[2025-06-04 23:34:31] 2025-06-04 21:34:08,102 | INFO     | -- intersect: -44249331836.32923
[2025-06-04 23:34:31] 2025-06-04 21:34:08,102 | INFO     | intersect: -44249331836.32923
[2025-06-04 23:34:31] 2025-06-04 21:34:08,103 | INFO     | chi2: 5.607926606071287
[2025-06-04 23:34:31] 2025-06-04 21:34:08,103 | INFO     | current chi2=5.607926606071287 (change=11.36927796994041 %)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,103 | INFO     | right removable region: 223
[2025-06-04 23:34:31] 2025-06-04 21:34:08,103 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,105 | INFO     | sum of deviations: -1614557851.5
[2025-06-04 23:34:31] 2025-06-04 21:34:08,105 | INFO     | mean x: 1749065950.5
[2025-06-04 23:34:31] 2025-06-04 21:34:08,106 | INFO     | mean y: 2475064.120535714
[2025-06-04 23:34:31] 2025-06-04 21:34:08,106 | INFO     | -- intersect: 812775313.9251133
[2025-06-04 23:34:31] 2025-06-04 21:34:08,106 | INFO     | intersect: 812775313.9251133
[2025-06-04 23:34:31] 2025-06-04 21:34:08,106 | INFO     | chi2: 1.827524341809026
[2025-06-04 23:34:31] 2025-06-04 21:34:08,106 | INFO     | current chi2=1.827524341809026 (change=71.11681137790119 %)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,107 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,109 | INFO     | sum of deviations: -32048396671.999973
[2025-06-04 23:34:31] 2025-06-04 21:34:08,109 | INFO     | mean x: 1749066103.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,109 | INFO     | mean y: 2495254.114155251
[2025-06-04 23:34:31] 2025-06-04 21:34:08,109 | INFO     | -- intersect: 17213682020.0327
[2025-06-04 23:34:31] 2025-06-04 21:34:08,109 | INFO     | intersect: 17213682020.0327
[2025-06-04 23:34:31] 2025-06-04 21:34:08,110 | INFO     | chi2: 0.9057825457700021
[2025-06-04 23:34:31] 2025-06-04 21:34:08,110 | INFO     | current chi2=0.9057825457700021 (change=50.43663577835642 %)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,110 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 23:34:31] 2025-06-04 21:34:08,112 | INFO     | sum of deviations: -29367771862.99999
[2025-06-04 23:34:31] 2025-06-04 21:34:08,112 | INFO     | mean x: 1749066255.5
[2025-06-04 23:34:31] 2025-06-04 21:34:08,112 | INFO     | mean y: 2493343.887850467
[2025-06-04 23:34:31] 2025-06-04 21:34:08,113 | INFO     | -- intersect: 16905618152.036427
[2025-06-04 23:34:31] 2025-06-04 21:34:08,113 | INFO     | intersect: 16905618152.036427
[2025-06-04 23:34:31] 2025-06-04 21:34:08,113 | INFO     | chi2: 0.8921106254812913
[2025-06-04 23:34:31] 2025-06-04 21:34:08,113 | INFO     | current chi2=0.8921106254812913 (change=1.509404255199943 %)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,113 | INFO     | left removable region: 30
[2025-06-04 23:34:31] 2025-06-04 21:34:08,114 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,130 | INFO     | sum of deviations: 2549168589.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,131 | INFO     | mean x: 1749066530.0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,131 | INFO     | mean y: 2490115.9896373055
[2025-06-04 23:34:31] 2025-06-04 21:34:08,131 | INFO     | -- intersect: -1997676599.9613059
[2025-06-04 23:34:31] 2025-06-04 21:34:08,131 | INFO     | intersect: -1997676599.9613059
[2025-06-04 23:34:31] 2025-06-04 21:34:08,132 | INFO     | chi2: 0.0007982670694641696
[2025-06-04 23:34:31] 2025-06-04 21:34:08,132 | INFO     | -- intersect: -1997676599.9613059
[2025-06-04 23:34:31] 2025-06-04 21:34:08,132 | INFO     | current memory leak: 1.14 B/s (using 193 data points, chi2=0.00)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,133 | INFO     | ..............................
[2025-06-04 23:34:31] 2025-06-04 21:34:08,133 | INFO     | . Timing measurements:
[2025-06-04 23:34:31] 2025-06-04 21:34:08,133 | INFO     | . get job = 0 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,133 | INFO     | . initial setup = 3 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,133 | INFO     | . payload setup = 157 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,133 | INFO     | . stage-in = 0 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,134 | INFO     | . payload execution = 14066 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,134 | INFO     | . stage-out = 2 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,134 | INFO     | . log creation = 0 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,134 | INFO     | ..............................
[2025-06-04 23:34:31] 2025-06-04 21:34:08,272 | INFO     | 
[2025-06-04 23:34:31] 2025-06-04 21:34:08,272 | INFO     | job summary report
[2025-06-04 23:34:31] 2025-06-04 21:34:08,272 | INFO     | --------------------------------------------------
[2025-06-04 23:34:31] 2025-06-04 21:34:08,272 | INFO     | PanDA job id: 6678312647
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | task id: 45006595
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | errors: (none)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | pilot state: finished 
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | transexitcode: 0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | exeerrorcode: 0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | exeerrordiag: 
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | exitcode: 0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | exitmsg: OK
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | cpuconsumptiontime: 51234 s
[2025-06-04 23:34:31] 2025-06-04 21:34:08,273 | INFO     | nevents: 400
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | neventsw: 0
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | pid: 7583
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | pgrp: 7583
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | corecount: 8
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | event service: False
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | sizes: {0: 2397116, 1: 2397371, 12: 2397371, 23: 2397399, 34: 2397427, 44: 2397455, 55: 2397611, 66: 2397639, 77: 2397667, 82: 2397929, 87: 2397985, 14229: 2428104
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | --------------------------------------------------
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | 
[2025-06-04 23:34:31] 2025-06-04 21:34:08,274 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,587 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,587 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:34:31] 2025-06-04 21:34:08,587 | INFO     | job 6678312647 has completed (purged errors)
[2025-06-04 23:34:31] 2025-06-04 21:34:08,587 | INFO     | overall cleanup function is called
[2025-06-04 23:34:31] 2025-06-04 21:34:09,595 | INFO     | --- collectZombieJob: --- 10, [7583]
[2025-06-04 23:34:31] 2025-06-04 21:34:09,595 | INFO     | zombie collector waiting for pid 7583
[2025-06-04 23:34:31] 2025-06-04 21:34:09,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:34:31] 2025-06-04 21:34:09,596 | INFO     | collected zombie processes
[2025-06-04 23:34:31] 2025-06-04 21:34:09,596 | INFO     | will attempt to kill all subprocesses of pid=7583
[2025-06-04 23:34:31] 2025-06-04 21:34:09,717 | INFO     | process IDs to be killed: [7583] (in reverse order)
[2025-06-04 23:34:31] 2025-06-04 21:34:10,373 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:34:31] 2025-06-04 21:34:10,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:34:31] 2025-06-04 21:34:10,376 | INFO     | did not find any defunct processes belonging to 7583
[2025-06-04 23:34:31] 2025-06-04 21:34:10,379 | INFO     | did not find any defunct processes belonging to 7583
[2025-06-04 23:34:31] 2025-06-04 21:34:10,380 | INFO     | ready for new job
[2025-06-04 23:34:31] 2025-06-04 21:34:10,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:34:31] 2025-06-04 21:34:10,382 | INFO     | **************************************
[2025-06-04 23:34:31] 2025-06-04 21:34:10,382 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:34:31] 2025-06-04 21:34:10,382 | INFO     | **************************************
[2025-06-04 23:34:31] 2025-06-04 21:34:10,382 | INFO     | 
[2025-06-04 23:34:31] 2025-06-04 21:34:10,383 | INFO     | pilot is running in a VM
[2025-06-04 23:34:31] 2025-06-04 21:34:10,383 | INFO     | architecture information:
[2025-06-04 23:34:31] 2025-06-04 21:34:10,391 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:34:31] 2025-06-04 21:34:10,630 | INFO     | cat /etc/os-release:
[2025-06-04 23:34:31] NAME="CentOS Linux"
[2025-06-04 23:34:31] VERSION="7 (Core)"
[2025-06-04 23:34:31] ID="centos"
[2025-06-04 23:34:31] ID_LIKE="rhel fedora"
[2025-06-04 23:34:31] VERSION_ID="7"
[2025-06-04 23:34:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:34:31] ANSI_COLOR="0;31"
[2025-06-04 23:34:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:34:31] HOME_URL="https://www.centos.org/"
[2025-06-04 23:34:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:34:31] 
[2025-06-04 23:34:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:34:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:34:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:34:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:34:31] 
[2025-06-04 23:34:31] 2025-06-04 21:34:10,630 | INFO     | **************************************
[2025-06-04 23:34:31] 2025-06-04 21:34:11,137 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 23:34:31] 2025-06-04 21:34:11,340 | INFO     | sufficient remaining disk space (496509124608 B)
[2025-06-04 23:34:31] 2025-06-04 21:34:11,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:34:31] 2025-06-04 21:34:11,340 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:34:31] 2025-06-04 21:34:11,341 | INFO     | update_server=False
[2025-06-04 23:34:31] 2025-06-04 21:34:11,341 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:34:31] 2025-06-04 21:34:11,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:34:31] 2025-06-04 21:34:11,729 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:34:31] 2025-06-04 21:34:11,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:34:31] 2025-06-04 21:34:11,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:34:31] 2025-06-04 21:34:11,795 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 23:34:31] 2025-06-04 21:34:11,795 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 23:34:31] 2025-06-04 21:34:11,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:34:31] 2025-06-04 21:34:11,796 | INFO     | will abort loop
[2025-06-04 23:34:31] 2025-06-04 21:34:12,169 | INFO     | all data control threads have been joined
[2025-06-04 23:34:31] 2025-06-04 21:34:12,240 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:34:31] 2025-06-04 21:34:12,327 | INFO     | all payload control threads have been joined
[2025-06-04 23:34:31] 2025-06-04 21:34:12,346 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:12,516 | INFO     | all job control threads have been joined
[2025-06-04 23:34:31] 2025-06-04 21:34:12,589 | INFO     | [job] validate thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:12,675 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:12,801 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,008 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,010 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,175 | INFO     | [data] control thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,287 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:34:31] 2025-06-04 21:34:13,316 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,333 | INFO     | [payload] control thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,354 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,366 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,407 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:13,522 | INFO     | [job] control thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:14,294 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:16,249 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:34:31] 2025-06-04 21:34:16,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629550630720)>', '<ExcThread(monitor, started 139628967352064)>']
[2025-06-04 23:34:31] 2025-06-04 21:34:17,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:34:31] 2025-06-04 21:34:17,765 | INFO     | [monitor] control thread has ended
[2025-06-04 23:34:31] 2025-06-04 21:34:22,008 | INFO     | all workflow threads have been joined
[2025-06-04 23:34:31] 2025-06-04 21:34:22,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:34:31] 2025-06-04 21:34:22,008 | INFO     | traces error code: 0
[2025-06-04 23:34:31] 2025-06-04 21:34:22,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:34:31] 2025-06-04 21:34:22,243 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:34:31] 2025-06-04 21:34:22,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:34:31] 2025-06-04 21:34:22,279 [wrapper] pilotpid: 29347
[2025-06-04 23:34:31] 2025-06-04 21:34:22,292 [wrapper] Pilot exit status: 0
[2025-06-04 23:34:31] 2025-06-04 21:34:22,525 [wrapper] pandaids: 6678312647
[2025-06-04 23:34:31] 2025-06-04 21:34:22,837 [wrapper] cleanup supervisor_pilot 28967 29348
[2025-06-04 23:34:31] 2025-06-04 21:34:22,889 [wrapper] Test setup, not cleaning
[2025-06-04 23:34:31] 2025-06-04 21:34:22,931 [wrapper] apfmon messages muted
[2025-06-04 23:34:31] 2025-06-04 21:34:22,994 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:34:31] 2025-06-04 21:34:23,051 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:34:31]  *** Error codes and diagnostics ***
[2025-06-04 23:34:31]     "exeErrorCode": 0,
[2025-06-04 23:34:31]     "exeErrorDiag": "",
[2025-06-04 23:34:31]     "pilotErrorCode": 0,
[2025-06-04 23:34:31]     "pilotErrorDiag": "",
[2025-06-04 23:34:31]  *** Listing of results directory ***
[2025-06-04 23:34:31] total 392100
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:09 queuedata.json
[2025-06-04 23:34:31] -rwx------. 1 boinc boinc     37140 Jun  4 06:10 runpilot2-wrapper.sh
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:34:31] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:28 run_atlas
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:28 job.xml
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc      6392 Jun  4 19:28 init_data.xml
[2025-06-04 23:34:31] -rw-r--r--. 2 boinc boinc 213695764 Jun  4 19:28 EVNT.45006593._002086.pool.root.1
[2025-06-04 23:34:31] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:28 start_atlas.sh
[2025-06-04 23:34:31] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:28 shared
[2025-06-04 23:34:31] -rw-r--r--. 2 boinc boinc    508878 Jun  4 19:28 input.tar.gz
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:28 boinc_lockfile
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc      2525 Jun  4 19:28 pandaJob.out
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc    990984 Jun  4 19:32 agis_schedconf.cvmfs.json
[2025-06-04 23:34:31] drwx------. 4 boinc boinc      4096 Jun  4 19:32 pilot3
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc 180739557 Jun  4 23:32 HITS.45006595._052093.pool.root.1
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc       531 Jun  4 23:32 boinc_task_state.xml
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc      1020 Jun  4 23:32 memory_monitor_summary.json
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc   1598969 Jun  4 23:32 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc    391298 Jun  4 23:32 log.45006595._052093.job.log.tgz.1
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc        95 Jun  4 23:34 pilot_heartbeat.json
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc      7692 Jun  4 23:34 heartbeat.json
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc      4603 Jun  4 23:34 pilotlog.txt
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc   1236461 Jun  4 23:34 log.45006595._052093.job.log.1
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc       357 Jun  4 23:34 output.list
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc       620 Jun  4 23:34 runtime_log
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc   1648640 Jun  4 23:34 result.tar.gz
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc      8673 Jun  4 23:34 runtime_log.err
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc       657 Jun  4 23:34 IftKDm0dug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZ8mKDmvdi7em.diag
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc      8192 Jun  4 23:34 boinc_mmap_file
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc        28 Jun  4 23:34 wrapper_checkpoint.txt
[2025-06-04 23:34:31] -rw-r--r--. 1 boinc boinc     20481 Jun  4 23:34 stderr.txt
[2025-06-04 23:34:31] HITS file was successfully produced:
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc 180739557 Jun  4 23:32 shared/HITS.pool.root.1
[2025-06-04 23:34:31]  *** Contents of shared directory: ***
[2025-06-04 23:34:31] total 387320
[2025-06-04 23:34:31] -rw-r--r--. 2 boinc boinc 213695764 Jun  4 19:28 ATLAS.root_0
[2025-06-04 23:34:31] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:28 start_atlas.sh
[2025-06-04 23:34:31] -rw-r--r--. 2 boinc boinc    508878 Jun  4 19:28 input.tar.gz
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc 180739557 Jun  4 23:32 HITS.pool.root.1
[2025-06-04 23:34:31] -rw-------. 1 boinc boinc   1648640 Jun  4 23:34 result.tar.gz
23:34:33 (20227): run_atlas exited; CPU time 51427.061971
23:34:33 (20227): called boinc_finish(0)

</stderr_txt>
]]>

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