Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:16:57 (2667399): wrapper (7.7.26015): starting
08:16:57 (2667399): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 08:16:57] Arguments: --nthreads 12
[2025-06-04 08:16:57] Threads: 12
[2025-06-04 08:16:57] Checking for CVMFS
[2025-06-04 08:16:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:16:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:16:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:16:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:16:57] 2.12.6.0 4996 739 94172 146779 0 391 27448790 32935936 14089 16776704 0 1834364 99.469 2779361 31869 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:16:57] CVMFS is ok
[2025-06-04 08:16:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:16:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:16:57] Further information can be found at the LHC@home message board.
[2025-06-04 08:16:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:16:57] Checking for apptainer binary...
[2025-06-04 08:16:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:16:57] Running /usr/bin/apptainer --version
[2025-06-04 08:16:57] apptainer version 1.4.1-1.el9
[2025-06-04 08:16:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:16:57] c6-5-7-3.aglt2.org
[2025-06-04 08:16:57] apptainer works
[2025-06-04 08:16:58] Set ATHENA_PROC_NUMBER=12
[2025-06-04 08:16:58] Set ATHENA_CORE_NUMBER=12
[2025-06-04 08:16:58] Starting ATLAS job with PandaID=6678313340
[2025-06-04 08:16:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:23:45]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:23:45] 2025-06-04 14:23:34,223 | INFO     | intersect: -70013012717.5446
[2025-06-04 10:23:45] 2025-06-04 14:23:34,223 | INFO     | chi2: 4.183851009271577
[2025-06-04 10:23:45] 2025-06-04 14:23:34,223 | INFO     | current chi2=4.183851009271577 (change=0.6191736080959765 %)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,223 | INFO     | right removable region: 117
[2025-06-04 10:23:45] 2025-06-04 14:23:34,223 | INFO     | sum of square deviations: 509454186.92372864
[2025-06-04 10:23:45] 2025-06-04 14:23:34,223 | INFO     | sum of deviations: -10721644666.262712
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | mean x: 1749043381.9745762
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | mean y: 2474465.245762712
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | -- intersect: 36811714881.23885
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | intersect: 36811714881.23885
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | chi2: 1.4901985050777262
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | current chi2=1.4901985050777262 (change=64.60266902563802 %)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | sum of square deviations: 447380128.247787
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | sum of deviations: -28697533929.17699
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | mean x: 1749043534.4955752
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | mean y: 2518527.646017699
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | -- intersect: 112196228094.90305
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | intersect: 112196228094.90305
[2025-06-04 10:23:45] 2025-06-04 14:23:34,224 | INFO     | chi2: 0.3858106925545338
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | current chi2=0.3858106925545338 (change=74.1101141062807 %)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | sum of square deviations: 390575524.0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | sum of deviations: -31393172222.000004
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | mean x: 1749043687.0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | mean y: 2525535.4444444445
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | -- intersect: 140584887500.84213
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | intersect: 140584887500.84213
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | chi2: 0.2368173382101168
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | current chi2=0.2368173382101168 (change=38.618254294068585 %)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,225 | INFO     | sum of square deviations: 338787681.7281546
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | sum of deviations: -28946365086.038837
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | mean x: 1749043839.514563
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | mean y: 2518265.359223301
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | -- intersect: 149442607916.25824
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | intersect: 149442607916.25824
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | chi2: 0.22588729679953637
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | current chi2=0.22588729679953637 (change=4.6153890138241165 %)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | left removable region: 40
[2025-06-04 10:23:45] 2025-06-04 14:23:34,226 | INFO     | sum of square deviations: 141535757.24675342
[2025-06-04 10:23:45] 2025-06-04 14:23:34,227 | INFO     | sum of deviations: -13155857332.14286
[2025-06-04 10:23:45] 2025-06-04 14:23:34,227 | INFO     | mean x: 1749044266.5064936
[2025-06-04 10:23:45] 2025-06-04 14:23:34,227 | INFO     | mean y: 2476887.285714286
[2025-06-04 10:23:45] 2025-06-04 14:23:34,227 | INFO     | sufficient remaining disk space (76370935808 B)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,228 | INFO     | -- intersect: 162577484682.99026
[2025-06-04 10:23:45] 2025-06-04 14:23:34,228 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,228 | INFO     | intersect: 162577484682.99026
[2025-06-04 10:23:45] 2025-06-04 14:23:34,228 | INFO     | chi2: 0.18972288832262857
[2025-06-04 10:23:45] 2025-06-04 14:23:34,229 | INFO     | -- intersect: 162577484682.99026
[2025-06-04 10:23:45] 2025-06-04 14:23:34,229 | INFO     | current memory leak: -92.95 B/s (using 77 data points, chi2=0.19)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,230 | INFO     | ..............................
[2025-06-04 10:23:45] 2025-06-04 14:23:34,230 | INFO     | . Timing measurements:
[2025-06-04 10:23:45] 2025-06-04 14:23:34,230 | INFO     | . get job = 0 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,230 | INFO     | . initial setup = 4 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,231 | INFO     | . payload setup = 21 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,231 | INFO     | . stage-in = 0 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,231 | INFO     | . payload execution = 7511 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,231 | INFO     | . stage-out = 0 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,231 | INFO     | . log creation = 0 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,231 | INFO     | ..............................
[2025-06-04 10:23:45] 2025-06-04 14:23:34,232 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6678313340: 4277272 B (within 2537553920 B limit)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,232 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6678313340/HITS.45006595._052434.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,232 | INFO     | total size of present files: 0 B (workdir size: 4277272 B)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,232 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6678313340/HITS.45006595._052434.pool.root.1 since it does not exist
[2025-06-04 10:23:45] 2025-06-04 14:23:34,328 | INFO     | 
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | job summary report
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | --------------------------------------------------
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | PanDA job id: 6678313340
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | task id: 45006595
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | errors: (none)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:23:45] 2025-06-04 14:23:34,329 | INFO     | pilot state: finished 
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | transexitcode: 0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | exeerrorcode: 0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | exeerrordiag: 
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | exitcode: 0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | exitmsg: OK
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | cpuconsumptiontime: 33423 s
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | nevents: 400
[2025-06-04 10:23:45] 2025-06-04 14:23:34,331 | INFO     | neventsw: 0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | pid: 2678543
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | pgrp: 2678543
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | corecount: 12
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | event service: False
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | sizes: {0: 2397170, 1: 2397369, 8: 2397575, 12: 2397603, 7536: 2425018, 7537: 2433959, 7539: 2434143, 7545: 2434341}
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | --------------------------------------------------
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | 
[2025-06-04 10:23:45] 2025-06-04 14:23:34,332 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 10:23:45] 2025-06-04 14:23:34,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:23:45] 2025-06-04 14:23:34,354 | INFO     | job 6678313340 has completed (purged errors)
[2025-06-04 10:23:45] 2025-06-04 14:23:34,354 | INFO     | overall cleanup function is called
[2025-06-04 10:23:45] 2025-06-04 14:23:34,609 | INFO     | number of running child processes to parent process 2678543: 1
[2025-06-04 10:23:45] 2025-06-04 14:23:34,610 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:23:45] 2025-06-04 14:23:34,610 | INFO     | aborting job monitoring since job object (job id=6678313340) has expired
[2025-06-04 10:23:45] 2025-06-04 14:23:35,259 | INFO     | PID=2671517 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 10:23:45] 2025-06-04 14:23:35,260 | INFO     | .. there are 15 such processes running
[2025-06-04 10:23:45] 2025-06-04 14:23:35,361 | INFO     | --- collectZombieJob: --- 10, [2678543]
[2025-06-04 10:23:45] 2025-06-04 14:23:35,362 | INFO     | zombie collector waiting for pid 2678543
[2025-06-04 10:23:45] 2025-06-04 14:23:35,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:23:45] 2025-06-04 14:23:35,362 | INFO     | collected zombie processes
[2025-06-04 10:23:45] 2025-06-04 14:23:35,362 | INFO     | will attempt to kill all subprocesses of pid=2678543
[2025-06-04 10:23:45] 2025-06-04 14:23:35,541 | INFO     | process IDs to be killed: [2678543] (in reverse order)
[2025-06-04 10:23:45] 2025-06-04 14:23:35,629 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:23:45] 2025-06-04 14:23:35,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:23:45] 2025-06-04 14:23:35,639 | INFO     | did not find any defunct processes belonging to 2678543
[2025-06-04 10:23:45] 2025-06-04 14:23:35,648 | INFO     | did not find any defunct processes belonging to 2678543
[2025-06-04 10:23:45] 2025-06-04 14:23:35,648 | INFO     | ready for new job
[2025-06-04 10:23:45] 2025-06-04 14:23:35,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:23:45] 2025-06-04 14:23:35,651 | INFO     | **************************************
[2025-06-04 10:23:45] 2025-06-04 14:23:35,651 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:23:45] 2025-06-04 14:23:35,651 | INFO     | **************************************
[2025-06-04 10:23:45] 2025-06-04 14:23:35,651 | INFO     | 
[2025-06-04 10:23:45] 2025-06-04 14:23:35,667 | INFO     | architecture information:
[2025-06-04 10:23:45] 2025-06-04 14:23:35,668 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:23:45] 2025-06-04 14:23:35,684 | INFO     | cat /etc/os-release:
[2025-06-04 10:23:45] NAME="CentOS Linux"
[2025-06-04 10:23:45] VERSION="7 (Core)"
[2025-06-04 10:23:45] ID="centos"
[2025-06-04 10:23:45] ID_LIKE="rhel fedora"
[2025-06-04 10:23:45] VERSION_ID="7"
[2025-06-04 10:23:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:23:45] ANSI_COLOR="0;31"
[2025-06-04 10:23:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:23:45] HOME_URL="https://www.centos.org/"
[2025-06-04 10:23:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:23:45] 
[2025-06-04 10:23:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:23:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:23:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:23:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:23:45] 
[2025-06-04 10:23:45] 2025-06-04 14:23:35,684 | INFO     | **************************************
[2025-06-04 10:23:45] 2025-06-04 14:23:36,187 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 10:23:45] 2025-06-04 14:23:36,204 | INFO     | sufficient remaining disk space (76376178688 B)
[2025-06-04 10:23:45] 2025-06-04 14:23:36,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:23:45] 2025-06-04 14:23:36,205 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:23:45] 2025-06-04 14:23:36,205 | INFO     | update_server=False
[2025-06-04 10:23:45] 2025-06-04 14:23:36,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:23:45] 2025-06-04 14:23:36,205 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:23:45] 2025-06-04 14:23:36,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:23:45] 2025-06-04 14:23:36,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:23:45] 2025-06-04 14:23:36,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:23:45] 2025-06-04 14:23:36,206 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:23:45] 2025-06-04 14:23:36,206 | INFO     | aborting loop
[2025-06-04 10:23:45] 2025-06-04 14:23:36,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:23:45] 2025-06-04 14:23:36,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:23:45] 2025-06-04 14:23:36,253 | INFO     | all data control threads have been joined
[2025-06-04 10:23:45] 2025-06-04 14:23:37,052 | INFO     | all payload control threads have been joined
[2025-06-04 10:23:45] 2025-06-04 14:23:37,207 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,212 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,212 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,259 | INFO     | [data] control thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:23:45] 2025-06-04 14:23:37,346 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,451 | INFO     | all job control threads have been joined
[2025-06-04 10:23:45] 2025-06-04 14:23:37,707 | INFO     | [job] validate thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,707 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:37,707 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:38,017 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:38,055 | INFO     | [payload] control thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:38,454 | INFO     | [job] control thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:38,518 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:38,706 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:39,310 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:40,213 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:23:45] 2025-06-04 14:23:40,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145831061312)>', '<ExcThread(monitor, started 140145487492864)>']
[2025-06-04 10:23:45] 2025-06-04 14:23:41,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:23:45] 2025-06-04 14:23:41,234 | INFO     | [monitor] control thread has ended
[2025-06-04 10:23:45] 2025-06-04 14:23:45,362 | INFO     | all workflow threads have been joined
[2025-06-04 10:23:45] 2025-06-04 14:23:45,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:23:45] 2025-06-04 14:23:45,363 | INFO     | traces error code: 0
[2025-06-04 10:23:45] 2025-06-04 14:23:45,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:23:45] 2025-06-04 14:23:45,534 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:23:45] 2025-06-04 14:23:45,537 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:23:45] 2025-06-04 14:23:45,540 [wrapper] pilotpid: 2671517
[2025-06-04 10:23:45] 2025-06-04 14:23:45,543 [wrapper] Pilot exit status: 0
[2025-06-04 10:23:45] 2025-06-04 14:23:45,553 [wrapper] pandaids: 6678313340
[2025-06-04 10:23:45] 2025-06-04 14:23:45,622 [wrapper] cleanup supervisor_pilot 2985801 2671518
[2025-06-04 10:23:45] 2025-06-04 14:23:45,625 [wrapper] Test setup, not cleaning
[2025-06-04 10:23:45] 2025-06-04 14:23:45,627 [wrapper] apfmon messages muted
[2025-06-04 10:23:45] 2025-06-04 14:23:45,629 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:23:45] 2025-06-04 14:23:45,632 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:23:45]  *** Error codes and diagnostics ***
[2025-06-04 10:23:45]     "exeErrorCode": 0,
[2025-06-04 10:23:45]     "exeErrorDiag": "",
[2025-06-04 10:23:45]     "pilotErrorCode": 0,
[2025-06-04 10:23:45]     "pilotErrorDiag": "",
[2025-06-04 10:23:45]  *** Listing of results directory ***
[2025-06-04 10:23:45] total 385052
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 00:17 queuedata.json
[2025-06-04 10:23:45] -rwx------. 1 boincer umatlas     37140 Jun  4 00:18 runpilot2-wrapper.sh
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:23:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:16 run_atlas
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:16 job.xml
[2025-06-04 10:23:45] -rw-r--r--. 2 boincer umatlas 213896017 Jun  4 08:16 EVNT.45006593._002100.pool.root.1
[2025-06-04 10:23:45] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:16 start_atlas.sh
[2025-06-04 10:23:45] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:16 shared
[2025-06-04 10:23:45] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 08:16 input.tar.gz
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:16 boinc_lockfile
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 08:16 pandaJob.out
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas    986812 Jun  4 08:17 agis_schedconf.cvmfs.json
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:17 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:23:45] drwx------. 4 boincer umatlas      4096 Jun  4 08:17 pilot3
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas      6839 Jun  4 10:19 init_data.xml
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas        95 Jun  4 10:22 pilot_heartbeat.json
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas 174437588 Jun  4 10:22 HITS.45006595._052434.pool.root.1
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas       530 Jun  4 10:22 boinc_task_state.xml
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas      1038 Jun  4 10:23 memory_monitor_summary.json
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas    385685 Jun  4 10:23 log.45006595._052434.job.log.tgz.1
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas      7720 Jun  4 10:23 heartbeat.json
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 10:23 boinc_mmap_file
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas        27 Jun  4 10:23 wrapper_checkpoint.txt
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas      4476 Jun  4 10:23 pilotlog.txt
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas    679510 Jun  4 10:23 log.45006595._052434.job.log.1
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas       357 Jun  4 10:23 output.list
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas       620 Jun  4 10:23 runtime_log
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas   1085440 Jun  4 10:23 result.tar.gz
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas      8661 Jun  4 10:23 runtime_log.err
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas       653 Jun  4 10:23 3vhNDm9kug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSBnKDmnFKD6n.diag
[2025-06-04 10:23:45] -rw-r--r--. 1 boincer umatlas     21459 Jun  4 10:23 stderr.txt
[2025-06-04 10:23:45] HITS file was successfully produced:
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas 174437588 Jun  4 10:22 shared/HITS.pool.root.1
[2025-06-04 10:23:45]  *** Contents of shared directory: ***
[2025-06-04 10:23:45] total 380816
[2025-06-04 10:23:45] -rw-r--r--. 2 boincer umatlas 213896017 Jun  4 08:16 ATLAS.root_0
[2025-06-04 10:23:45] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:16 start_atlas.sh
[2025-06-04 10:23:45] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 08:16 input.tar.gz
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas 174437588 Jun  4 10:22 HITS.pool.root.1
[2025-06-04 10:23:45] -rw-------. 1 boincer umatlas   1085440 Jun  4 10:23 result.tar.gz
10:23:47 (2667399): run_atlas exited; CPU time 33581.476537
10:23:47 (2667399): called boinc_finish(0)

</stderr_txt>
]]>

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