Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:54:44 (791132): wrapper (7.7.26015): starting
02:54:44 (791132): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 02:54:44] Arguments: --nthreads 4
[2025-06-06 02:54:44] Threads: 4
[2025-06-06 02:54:44] Checking for CVMFS
[2025-06-06 02:54:44] No cvmfs_config command found, will try listing directly
[2025-06-06 02:54:44] CVMFS is ok
[2025-06-06 02:54:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 02:54:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 02:54:44] Further information can be found at the LHC@home message board.
[2025-06-06 02:54:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 02:54:44] Checking for apptainer binary...
[2025-06-06 02:54:44] which: no apptainer in ((null))
[2025-06-06 02:54:44] apptainer is not installed, using version from CVMFS
[2025-06-06 02:54:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 02:54:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-06-06 02:54:44] apptainer works
[2025-06-06 02:54:44] Set ATHENA_PROC_NUMBER=4
[2025-06-06 02:54:44] Set ATHENA_CORE_NUMBER=4
[2025-06-06 02:54:44] Starting ATLAS job with PandaID=6678313238
[2025-06-06 02:54:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 06:01:20]  *** The last 200 lines of the pilot log: ***
[2025-06-06 06:01:20] 2025-06-06 03:57:59,899 | INFO     | log transfer has been attempted: DONE
[2025-06-06 06:01:20] 2025-06-06 03:57:59,899 | INFO     | job 6678313238 has finished - writing final server update
[2025-06-06 06:01:20] 2025-06-06 03:57:59,899 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3393832/.job.ad'
[2025-06-06 06:01:20] 2025-06-06 03:57:59,900 | INFO     | total number of processed events: 400 (read)
[2025-06-06 06:01:20] 2025-06-06 03:57:59,903 | INFO     | executing command: lscpu
[2025-06-06 06:01:20] 2025-06-06 03:57:59,946 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 06:01:20] 2025-06-06 03:58:02,334 | INFO     | monitor loop #808: job 0:6678313238 is in state 'finished'
[2025-06-06 06:01:20] 2025-06-06 03:58:02,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 06:01:20] 2025-06-06 03:58:03,554 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 06:01:20] 2025-06-06 03:58:03,554 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6678313238/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 06:01:20] 2025-06-06 03:58:03,555 | INFO     | extracted standard info from prmon json
[2025-06-06 06:01:20] 2025-06-06 03:58:03,556 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 06:01:20] 2025-06-06 03:58:03,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 06:01:20] 2025-06-06 03:58:03,556 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 06:01:20] 2025-06-06 03:58:03,556 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 06:01:20] 2025-06-06 03:58:03,558 | INFO     | fitting pss+swap vs Time
[2025-06-06 06:01:20] 2025-06-06 03:58:03,559 | INFO     | sum of square deviations: 1808350185.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,559 | INFO     | sum of deviations: 27831475822.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,559 | INFO     | mean x: 1749176778.5
[2025-06-06 06:01:20] 2025-06-06 03:58:03,559 | INFO     | mean y: 2309586.533333333
[2025-06-06 06:01:20] 2025-06-06 03:58:03,560 | INFO     | -- intersect: -26918455884.136055
[2025-06-06 06:01:20] 2025-06-06 03:58:03,560 | INFO     | intersect: -26918455884.136055
[2025-06-06 06:01:20] 2025-06-06 03:58:03,560 | INFO     | chi2: 1.6665777830838466
[2025-06-06 06:01:20] 2025-06-06 03:58:03,560 | INFO     | sum of square deviations: 1661798600.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | sum of deviations: 26651945174.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | mean x: 1749176626.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | mean y: 2308355.725714286
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | -- intersect: -28051006610.236046
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | intersect: -28051006610.236046
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | chi2: 1.6680883463561273
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | current chi2=1.6680883463561273 (change=-0.09063863010855468 %)
[2025-06-06 06:01:20] 2025-06-06 03:58:03,561 | INFO     | right removable region: 174
[2025-06-06 06:01:20] 2025-06-06 03:58:03,562 | INFO     | sum of square deviations: 1661798600.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,562 | INFO     | sum of deviations: -1109510028.9999986
[2025-06-06 06:01:20] 2025-06-06 03:58:03,562 | INFO     | mean x: 1749176931.0
[2025-06-06 06:01:20] 2025-06-06 03:58:03,562 | INFO     | mean y: 2339382.314285714
[2025-06-06 06:01:20] 2025-06-06 03:58:03,562 | INFO     | -- intersect: 1170188089.9975986
[2025-06-06 06:01:20] 2025-06-06 03:58:03,562 | INFO     | intersect: 1170188089.9975986
[2025-06-06 06:01:20] 2025-06-06 03:58:03,563 | INFO     | chi2: 0.05251880590197296
[2025-06-06 06:01:20] 2025-06-06 03:58:03,563 | INFO     | current chi2=0.05251880590197296 (change=96.84870358677217 %)
[2025-06-06 06:01:20] 2025-06-06 03:58:03,563 | INFO     | sum of square deviations: 1523386702.5
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | sum of deviations: 354302273.99999946
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | mean x: 1749177083.5
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | mean y: 2337742.3529411764
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | -- intersect: -404477820.1668695
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | intersect: -404477820.1668695
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | chi2: 0.04632587763030851
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | current chi2=0.04632587763030851 (change=11.791829927023926 %)
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | left removable region: 20
[2025-06-06 06:01:20] 2025-06-06 03:58:03,564 | INFO     | sum of square deviations: 1132458442.5
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | sum of deviations: 5905282845.5
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | mean x: 1749177205.5
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | mean y: 2329310.201298701
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | -- intersect: -9118876164.302265
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | intersect: -9118876164.302265
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | chi2: 0.0006224226415318778
[2025-06-06 06:01:20] 2025-06-06 03:58:03,565 | INFO     | -- intersect: -9118876164.302265
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | current memory leak: 5.21 B/s (using 154 data points, chi2=0.00)
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | ..............................
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . Timing measurements:
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . get job = 0 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . initial setup = 1 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . payload setup = 6 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . stage-in = 0 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . payload execution = 10958 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . stage-out = 1 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | . log creation = 0 s
[2025-06-06 06:01:20] 2025-06-06 03:58:03,566 | INFO     | ..............................
[2025-06-06 06:01:20] 2025-06-06 03:58:04,052 | INFO     | 
[2025-06-06 06:01:20] 2025-06-06 03:58:04,052 | INFO     | job summary report
[2025-06-06 06:01:20] 2025-06-06 03:58:04,052 | INFO     | --------------------------------------------------
[2025-06-06 06:01:20] 2025-06-06 03:58:04,052 | INFO     | PanDA job id: 6678313238
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | task id: 45006595
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | errors: (none)
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | pilot state: finished 
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | transexitcode: 0
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | exeerrorcode: 0
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | exeerrordiag: 
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | exitcode: 0
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | exitmsg: OK
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | cpuconsumptiontime: 41699 s
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | nevents: 400
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | neventsw: 0
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | pid: 816987
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | pgrp: 816987
[2025-06-06 06:01:20] 2025-06-06 03:58:04,053 | INFO     | corecount: 4
[2025-06-06 06:01:20] 2025-06-06 03:58:04,054 | INFO     | event service: False
[2025-06-06 06:01:20] 2025-06-06 03:58:04,054 | INFO     | sizes: {0: 2397125, 1: 2397380, 5: 2397586, 12: 2397642, 10968: 2426600, 10970: 2435563, 10972: 2435747, 10976: 2435917}
[2025-06-06 06:01:20] 2025-06-06 03:58:04,054 | INFO     | --------------------------------------------------
[2025-06-06 06:01:20] 2025-06-06 03:58:04,054 | INFO     | 
[2025-06-06 06:01:20] 2025-06-06 03:58:04,054 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-06-06 06:01:20] 2025-06-06 03:58:04,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,067 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,067 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,067 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,069 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 06:01:20] 2025-06-06 03:58:04,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 06:01:20] 2025-06-06 03:58:04,070 | INFO     | job 6678313238 has completed (purged errors)
[2025-06-06 06:01:20] 2025-06-06 03:58:04,070 | INFO     | overall cleanup function is called
[2025-06-06 06:01:20] 2025-06-06 03:58:05,076 | INFO     | --- collectZombieJob: --- 10, [816987]
[2025-06-06 06:01:20] 2025-06-06 03:58:05,077 | INFO     | zombie collector waiting for pid 816987
[2025-06-06 06:01:20] 2025-06-06 03:58:05,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 06:01:20] 2025-06-06 03:58:05,077 | INFO     | collected zombie processes
[2025-06-06 06:01:20] 2025-06-06 03:58:05,077 | INFO     | will attempt to kill all subprocesses of pid=816987
[2025-06-06 06:01:20] 2025-06-06 03:58:05,362 | INFO     | process IDs to be killed: [816987] (in reverse order)
[2025-06-06 06:01:20] 2025-06-06 03:58:05,437 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 06:01:20] 2025-06-06 03:58:05,437 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 06:01:20] 2025-06-06 03:58:05,445 | INFO     | did not find any defunct processes belonging to 816987
[2025-06-06 06:01:20] 2025-06-06 03:58:05,452 | INFO     | did not find any defunct processes belonging to 816987
[2025-06-06 06:01:20] 2025-06-06 03:58:05,452 | INFO     | ready for new job
[2025-06-06 06:01:20] 2025-06-06 03:58:05,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 06:01:20] 2025-06-06 03:58:05,454 | INFO     | **************************************
[2025-06-06 06:01:20] 2025-06-06 03:58:05,454 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 06:01:20] 2025-06-06 03:58:05,454 | INFO     | **************************************
[2025-06-06 06:01:20] 2025-06-06 03:58:05,454 | INFO     | 
[2025-06-06 06:01:20] 2025-06-06 03:58:05,456 | INFO     | architecture information:
[2025-06-06 06:01:20] 2025-06-06 03:58:05,456 | INFO     | executing command: cat /etc/os-release
[2025-06-06 06:01:20] 2025-06-06 03:58:05,464 | INFO     | cat /etc/os-release:
[2025-06-06 06:01:20] NAME="CentOS Linux"
[2025-06-06 06:01:20] VERSION="7 (Core)"
[2025-06-06 06:01:20] ID="centos"
[2025-06-06 06:01:20] ID_LIKE="rhel fedora"
[2025-06-06 06:01:20] VERSION_ID="7"
[2025-06-06 06:01:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 06:01:20] ANSI_COLOR="0;31"
[2025-06-06 06:01:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 06:01:20] HOME_URL="https://www.centos.org/"
[2025-06-06 06:01:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 06:01:20] 
[2025-06-06 06:01:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 06:01:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 06:01:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 06:01:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 06:01:20] 
[2025-06-06 06:01:20] 2025-06-06 03:58:05,465 | INFO     | **************************************
[2025-06-06 06:01:20] 2025-06-06 03:58:05,968 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-06-06 06:01:20] 2025-06-06 03:58:05,982 | INFO     | sufficient remaining disk space (1652177240064 B)
[2025-06-06 06:01:20] 2025-06-06 03:58:05,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 06:01:20] 2025-06-06 03:58:05,983 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 06:01:20] 2025-06-06 03:58:05,983 | INFO     | update_server=False
[2025-06-06 06:01:20] 2025-06-06 03:58:05,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 06:01:20] 2025-06-06 03:58:05,984 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 06:01:20] 2025-06-06 03:58:05,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 06:01:20] 2025-06-06 03:58:05,984 | INFO     | aborting loop
[2025-06-06 06:01:20] 2025-06-06 03:58:06,095 | INFO     | all payload control threads have been joined
[2025-06-06 06:01:20] 2025-06-06 03:58:06,414 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 06:01:20] 2025-06-06 03:58:06,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 06:01:20] 2025-06-06 03:58:06,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 06:01:20] 2025-06-06 03:58:06,458 | INFO     | all job control threads have been joined
[2025-06-06 06:01:20] 2025-06-06 03:58:06,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 06:01:20] 2025-06-06 03:58:06,543 | INFO     | all data control threads have been joined
[2025-06-06 06:01:20] 2025-06-06 03:58:06,988 | INFO     | [job] retrieve thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:06,990 | INFO     | [job] job monitor thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:06,995 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:07,100 | INFO     | [payload] control thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:07,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:07,307 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:07,462 | INFO     | [job] control thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:07,547 | INFO     | [data] control thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:07,801 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:08,011 | INFO     | [payload] failed_post thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:08,193 | INFO     | [job] validate thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:08,305 | INFO     | [data] copytool_in thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:08,474 | INFO     | [data] copytool_out thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:08,586 | INFO     | [payload] validate_post thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:08,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 06:01:20] 2025-06-06 03:58:09,641 | INFO     | [job] queue monitor thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:09,986 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 06:01:20] 2025-06-06 03:58:10,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22740780726080)>', '<ExcThread(monitor, started 22740530571008)>']
[2025-06-06 06:01:20] 2025-06-06 03:58:11,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 06:01:20] 2025-06-06 03:58:11,436 | INFO     | [monitor] control thread has ended
[2025-06-06 06:01:20] 2025-06-06 03:58:15,522 | INFO     | all workflow threads have been joined
[2025-06-06 06:01:20] 2025-06-06 03:58:15,523 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 06:01:20] 2025-06-06 03:58:15,523 | INFO     | traces error code: 0
[2025-06-06 06:01:20] 2025-06-06 03:58:15,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 06:01:20] 2025-06-06 03:58:15,628 [wrapper] ==== pilot stdout END ====
[2025-06-06 06:01:20] 2025-06-06 03:58:15,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 06:01:20] 2025-06-06 03:58:15,633 [wrapper] pilotpid: 797285
[2025-06-06 06:01:20] 2025-06-06 03:58:15,635 [wrapper] Pilot exit status: 0
[2025-06-06 06:01:20] 2025-06-06 03:58:15,644 [wrapper] pandaids: 6678313238
[2025-06-06 06:01:20] 2025-06-06 03:58:15,692 [wrapper] cleanup supervisor_pilot  999635 797286
[2025-06-06 06:01:20] 2025-06-06 03:58:15,694 [wrapper] Test setup, not cleaning
[2025-06-06 06:01:20] 2025-06-06 03:58:15,697 [wrapper] apfmon messages muted
[2025-06-06 06:01:20] 2025-06-06 03:58:15,699 [wrapper] ==== wrapper stdout END ====
[2025-06-06 06:01:20] 2025-06-06 03:58:15,701 [wrapper] ==== wrapper stderr END ====
[2025-06-06 06:01:20]  *** Error codes and diagnostics ***
[2025-06-06 06:01:20]     "exeErrorCode": 0,
[2025-06-06 06:01:20]     "exeErrorDiag": "",
[2025-06-06 06:01:20]     "pilotErrorCode": 0,
[2025-06-06 06:01:20]     "pilotErrorDiag": "",
[2025-06-06 06:01:20]  *** Listing of results directory ***
[2025-06-06 06:01:20] total 391864
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-06 06:01:20] -rwx------ 1 boinc boinc     37140 Jun  4 06:16 runpilot2-wrapper.sh
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc      5111 Jun  4 06:16 queuedata.json
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc       100 Jun  6 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 06:01:20] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 02:54 run_atlas
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc       105 Jun  6 02:54 job.xml
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc      6422 Jun  6 02:54 init_data.xml
[2025-06-06 06:01:20] -rw-r--r-- 2 boinc boinc 215803542 Jun  6 02:54 EVNT.45006593._002096.pool.root.1
[2025-06-06 06:01:20] -rw-r--r-- 2 boinc boinc     15093 Jun  6 02:54 start_atlas.sh
[2025-06-06 06:01:20] drwxrwx--x 2 boinc boinc      4096 Jun  6 02:54 shared
[2025-06-06 06:01:20] -rw-r--r-- 2 boinc boinc    508873 Jun  6 02:54 input.tar.gz
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc         0 Jun  6 02:54 boinc_lockfile
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc      2524 Jun  6 02:54 pandaJob.out
[2025-06-06 06:01:20] -rw------- 1 boinc boinc    987721 Jun  6 02:54 agis_schedconf.cvmfs.json
[2025-06-06 06:01:20] drwx------ 4 boinc boinc      4096 Jun  6 02:54 pilot3
[2025-06-06 06:01:20] -rw------- 1 boinc boinc 178962987 Jun  6 05:57 HITS.45006595._052332.pool.root.1
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc       528 Jun  6 05:57 boinc_task_state.xml
[2025-06-06 06:01:20] -rw------- 1 boinc boinc        95 Jun  6 05:57 pilot_heartbeat.json
[2025-06-06 06:01:20] -rw------- 1 boinc boinc      1036 Jun  6 05:57 memory_monitor_summary.json
[2025-06-06 06:01:20] -rw------- 1 boinc boinc   1598969 Jun  6 05:57 agis_ddmendpoints.agis.ALL.json
[2025-06-06 06:01:20] -rw------- 1 boinc boinc    296137 Jun  6 05:57 log.45006595._052332.job.log.tgz.1
[2025-06-06 06:01:20] -rw------- 1 boinc boinc      7727 Jun  6 05:58 heartbeat.json
[2025-06-06 06:01:20] -rw------- 1 boinc boinc      4364 Jun  6 05:58 pilotlog.txt
[2025-06-06 06:01:20] -rw------- 1 boinc boinc   1035503 Jun  6 05:58 log.45006595._052332.job.log.1
[2025-06-06 06:01:20] -rw------- 1 boinc boinc       357 Jun  6 05:58 output.list
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc       620 Jun  6 05:58 runtime_log
[2025-06-06 06:01:20] -rw------- 1 boinc boinc   1351680 Jun  6 05:58 result.tar.gz
[2025-06-06 06:01:20] -rw------- 1 boinc boinc       664 Jun  6 05:58 tHCODm2iug7n9Rq4apOajLDm4fhM0noT9bVof3QYDm4gaKDmzRA6Jm.diag
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc      9026 Jun  6 05:58 runtime_log.err
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc        26 Jun  6 06:01 wrapper_checkpoint.txt
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc      8192 Jun  6 06:01 boinc_mmap_file
[2025-06-06 06:01:20] -rw-r--r-- 1 boinc boinc     20919 Jun  6 06:01 stderr.txt
[2025-06-06 06:01:20] HITS file was successfully produced:
[2025-06-06 06:01:20] -rw------- 1 boinc boinc 178962987 Jun  6 05:57 shared/HITS.pool.root.1
[2025-06-06 06:01:20]  *** Contents of shared directory: ***
[2025-06-06 06:01:20] total 387364
[2025-06-06 06:01:20] -rw-r--r-- 2 boinc boinc 215803542 Jun  6 02:54 ATLAS.root_0
[2025-06-06 06:01:20] -rw-r--r-- 2 boinc boinc     15093 Jun  6 02:54 start_atlas.sh
[2025-06-06 06:01:20] -rw-r--r-- 2 boinc boinc    508873 Jun  6 02:54 input.tar.gz
[2025-06-06 06:01:20] -rw------- 1 boinc boinc 178962987 Jun  6 05:57 HITS.pool.root.1
[2025-06-06 06:01:20] -rw------- 1 boinc boinc   1351680 Jun  6 05:58 result.tar.gz
06:01:22 (791132): run_atlas exited; CPU time 42085.528579
06:01:22 (791132): called boinc_finish(0)

</stderr_txt>
]]>

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