Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:16:18 (3093): wrapper (7.7.26015): starting
22:16:18 (3093): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:16:18] Arguments: --nthreads 8
[2025-06-04 22:16:18] Threads: 8
[2025-06-04 22:16:18] Checking for CVMFS
[2025-06-04 22:16:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:16:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:16:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:16:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:16:19] 2.11.2.0 16161 33664 91720 146793 3 145 18335903 25165825 3198 130560 0 17945442 99.809 18949913 2153 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:16:19] CVMFS is ok
[2025-06-04 22:16:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:16:19] Checking for apptainer binary...
[2025-06-04 22:16:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:16:19] Running /usr/bin/apptainer --version
[2025-06-04 22:16:20] apptainer version 1.3.2-1.el7
[2025-06-04 22:16:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:16:22] cg-vwn420.simple-grid.lan
[2025-06-04 22:16:22] apptainer works
[2025-06-04 22:16:22] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:16:22] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:16:22] Starting ATLAS job with PandaID=6678313124
[2025-06-04 22:16:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:35:59]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:35:59] 2025-06-05 00:04:58,239 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:35:59] 2025-06-05 00:04:58,239 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:35:59] 2025-06-05 00:04:58,239 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:35:59] 2025-06-05 00:04:58,239 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:35:59] 2025-06-05 00:04:58,244 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:35:59] 2025-06-05 00:04:58,245 | INFO     | sum of square deviations: 3392567795.5
[2025-06-05 02:35:59] 2025-06-05 00:04:58,247 | INFO     | sum of deviations: -44511415679.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,247 | INFO     | mean x: 1749075022.5
[2025-06-05 02:35:59] 2025-06-05 00:04:58,247 | INFO     | mean y: 2524221.3423423423
[2025-06-05 02:35:59] 2025-06-05 00:04:58,247 | INFO     | -- intersect: 22950866030.022278
[2025-06-05 02:35:59] 2025-06-05 00:04:58,247 | INFO     | intersect: 22950866030.022278
[2025-06-05 02:35:59] 2025-06-05 00:04:58,248 | INFO     | chi2: 2.5672832858996046
[2025-06-05 02:35:59] 2025-06-05 00:04:58,248 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,250 | INFO     | sum of deviations: -28404900954.000004
[2025-06-05 02:35:59] 2025-06-05 00:04:58,250 | INFO     | mean x: 1749074870.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,250 | INFO     | mean y: 2534999.4470046083
[2025-06-05 02:35:59] 2025-06-05 00:04:58,250 | INFO     | -- intersect: 15682795618.45749
[2025-06-05 02:35:59] 2025-06-05 00:04:58,251 | INFO     | intersect: 15682795618.45749
[2025-06-05 02:35:59] 2025-06-05 00:04:58,251 | INFO     | chi2: 1.7965306934451417
[2025-06-05 02:35:59] 2025-06-05 00:04:58,251 | INFO     | current chi2=1.7965306934451417 (change=30.022109234602155 %)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,252 | INFO     | sum of square deviations: 2954447953.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,253 | INFO     | sum of deviations: -27219225501.499996
[2025-06-05 02:35:59] 2025-06-05 00:04:58,253 | INFO     | mean x: 1749074717.5
[2025-06-05 02:35:59] 2025-06-05 00:04:58,254 | INFO     | mean y: 2535844.4764150945
[2025-06-05 02:35:59] 2025-06-05 00:04:58,254 | INFO     | -- intersect: 16116699949.571722
[2025-06-05 02:35:59] 2025-06-05 00:04:58,254 | INFO     | intersect: 16116699949.571722
[2025-06-05 02:35:59] 2025-06-05 00:04:58,254 | INFO     | chi2: 1.7947483528076782
[2025-06-05 02:35:59] 2025-06-05 00:04:58,254 | INFO     | current chi2=1.7947483528076782 (change=0.09921014118860333 %)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,254 | INFO     | right removable region: 211
[2025-06-05 02:35:59] 2025-06-05 00:04:58,255 | INFO     | sum of square deviations: 3168461268.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,256 | INFO     | sum of deviations: -80657707256.00002
[2025-06-05 02:35:59] 2025-06-05 00:04:58,257 | INFO     | mean x: 1749075175.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,257 | INFO     | mean y: 2548594.3271889403
[2025-06-05 02:35:59] 2025-06-05 00:04:58,257 | INFO     | -- intersect: 44527755469.56774
[2025-06-05 02:35:59] 2025-06-05 00:04:58,257 | INFO     | intersect: 44527755469.56774
[2025-06-05 02:35:59] 2025-06-05 00:04:58,257 | INFO     | chi2: 1.0209068615564014
[2025-06-05 02:35:59] 2025-06-05 00:04:58,258 | INFO     | current chi2=1.0209068615564014 (change=60.23396143450277 %)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,258 | INFO     | sum of square deviations: 2954447953.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,260 | INFO     | sum of deviations: -77439390932.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,260 | INFO     | mean x: 1749075327.5
[2025-06-05 02:35:59] 2025-06-05 00:04:58,260 | INFO     | mean y: 2546273.113207547
[2025-06-05 02:35:59] 2025-06-05 00:04:58,260 | INFO     | -- intersect: 45847770223.75101
[2025-06-05 02:35:59] 2025-06-05 00:04:58,261 | INFO     | intersect: 45847770223.75101
[2025-06-05 02:35:59] 2025-06-05 00:04:58,261 | INFO     | chi2: 1.010226973965205
[2025-06-05 02:35:59] 2025-06-05 00:04:58,261 | INFO     | current chi2=1.010226973965205 (change=1.0461177207600145 %)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,261 | INFO     | left removable region: 20
[2025-06-05 02:35:59] 2025-06-05 00:04:58,262 | INFO     | sum of square deviations: 2160561440.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,263 | INFO     | sum of deviations: -47824922076.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,263 | INFO     | mean x: 1749075297.0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,264 | INFO     | mean y: 2550224.282722513
[2025-06-05 02:35:59] 2025-06-05 00:04:58,264 | INFO     | -- intersect: 38719056145.11483
[2025-06-05 02:35:59] 2025-06-05 00:04:58,264 | INFO     | intersect: 38719056145.11483
[2025-06-05 02:35:59] 2025-06-05 00:04:58,264 | INFO     | chi2: 0.2028979218863829
[2025-06-05 02:35:59] 2025-06-05 00:04:58,265 | INFO     | -- intersect: 38719056145.11483
[2025-06-05 02:35:59] 2025-06-05 00:04:58,265 | INFO     | current memory leak: -22.14 B/s (using 191 data points, chi2=0.20)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,266 | INFO     | ..............................
[2025-06-05 02:35:59] 2025-06-05 00:04:58,266 | INFO     | . Timing measurements:
[2025-06-05 02:35:59] 2025-06-05 00:04:58,266 | INFO     | . get job = 0 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,266 | INFO     | . initial setup = 2 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,266 | INFO     | . payload setup = 16 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,266 | INFO     | . stage-in = 0 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,267 | INFO     | . payload execution = 13540 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,267 | INFO     | . stage-out = 4 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,267 | INFO     | . log creation = 1 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,267 | INFO     | ..............................
[2025-06-05 02:35:59] 2025-06-05 00:04:58,396 | INFO     | 
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | job summary report
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | --------------------------------------------------
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | PanDA job id: 6678313124
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | task id: 45006595
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | errors: (none)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | pilot state: finished 
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | transexitcode: 0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | exeerrorcode: 0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,397 | INFO     | exeerrordiag: 
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | exitcode: 0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | exitmsg: OK
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | cpuconsumptiontime: 50867 s
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | nevents: 400
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | neventsw: 0
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | pid: 15354
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | pgrp: 15354
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | corecount: 8
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | event service: False
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | sizes: {0: 2397342, 1: 2397370, 11: 2397576, 12: 2397604, 13561: 2427195, 13567: 2436136, 13570: 2436320, 13657: 2436490}
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | --------------------------------------------------
[2025-06-05 02:35:59] 2025-06-05 00:04:58,398 | INFO     | 
[2025-06-05 02:35:59] 2025-06-05 00:04:58,399 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-05 02:35:59] 2025-06-05 00:04:58,584 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,584 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,584 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,584 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,584 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | job 6678313124 has completed (purged errors)
[2025-06-05 02:35:59] 2025-06-05 00:04:58,586 | INFO     | overall cleanup function is called
[2025-06-05 02:35:59] 2025-06-05 00:04:59,527 | INFO     | PID=6779 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-05 02:35:59] 2025-06-05 00:04:59,527 | INFO     | .. there are 9 such processes running
[2025-06-05 02:35:59] 2025-06-05 00:04:59,596 | INFO     | --- collectZombieJob: --- 10, [15354]
[2025-06-05 02:35:59] 2025-06-05 00:04:59,596 | INFO     | zombie collector waiting for pid 15354
[2025-06-05 02:35:59] 2025-06-05 00:04:59,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:35:59] 2025-06-05 00:04:59,596 | INFO     | collected zombie processes
[2025-06-05 02:35:59] 2025-06-05 00:04:59,596 | INFO     | will attempt to kill all subprocesses of pid=15354
[2025-06-05 02:35:59] 2025-06-05 00:04:59,705 | INFO     | process IDs to be killed: [15354] (in reverse order)
[2025-06-05 02:35:59] 2025-06-05 00:05:00,270 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:35:59] 2025-06-05 00:05:00,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:35:59] 2025-06-05 00:05:00,274 | INFO     | did not find any defunct processes belonging to 15354
[2025-06-05 02:35:59] 2025-06-05 00:05:00,277 | INFO     | did not find any defunct processes belonging to 15354
[2025-06-05 02:35:59] 2025-06-05 00:05:00,277 | INFO     | ready for new job
[2025-06-05 02:35:59] 2025-06-05 00:05:00,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:35:59] 2025-06-05 00:05:00,279 | INFO     | **************************************
[2025-06-05 02:35:59] 2025-06-05 00:05:00,279 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:35:59] 2025-06-05 00:05:00,283 | INFO     | **************************************
[2025-06-05 02:35:59] 2025-06-05 00:05:00,283 | INFO     | 
[2025-06-05 02:35:59] 2025-06-05 00:05:00,283 | INFO     | pilot is running in a VM
[2025-06-05 02:35:59] 2025-06-05 00:05:00,284 | INFO     | architecture information:
[2025-06-05 02:35:59] 2025-06-05 00:05:00,299 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:35:59] 2025-06-05 00:05:00,518 | INFO     | cat /etc/os-release:
[2025-06-05 02:35:59] NAME="CentOS Linux"
[2025-06-05 02:35:59] VERSION="7 (Core)"
[2025-06-05 02:35:59] ID="centos"
[2025-06-05 02:35:59] ID_LIKE="rhel fedora"
[2025-06-05 02:35:59] VERSION_ID="7"
[2025-06-05 02:35:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:35:59] ANSI_COLOR="0;31"
[2025-06-05 02:35:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:35:59] HOME_URL="https://www.centos.org/"
[2025-06-05 02:35:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:35:59] 
[2025-06-05 02:35:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:35:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:35:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:35:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:35:59] 
[2025-06-05 02:35:59] 2025-06-05 00:05:00,519 | INFO     | **************************************
[2025-06-05 02:35:59] 2025-06-05 00:05:01,022 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-05 02:35:59] 2025-06-05 00:05:01,204 | INFO     | sufficient remaining disk space (496856203264 B)
[2025-06-05 02:35:59] 2025-06-05 00:05:01,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:35:59] 2025-06-05 00:05:01,204 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:35:59] 2025-06-05 00:05:01,205 | INFO     | update_server=False
[2025-06-05 02:35:59] 2025-06-05 00:05:01,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:35:59] 2025-06-05 00:05:01,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:35:59] 2025-06-05 00:05:01,205 | INFO     | aborting loop
[2025-06-05 02:35:59] 2025-06-05 00:05:01,456 | INFO     | all job control threads have been joined
[2025-06-05 02:35:59] 2025-06-05 00:05:01,533 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:35:59] 2025-06-05 00:05:01,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:35:59] 2025-06-05 00:05:01,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:35:59] 2025-06-05 00:05:01,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:35:59] 2025-06-05 00:05:01,948 | INFO     | all payload control threads have been joined
[2025-06-05 02:35:59] 2025-06-05 00:05:02,206 | INFO     | all data control threads have been joined
[2025-06-05 02:35:59] 2025-06-05 00:05:02,211 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:02,211 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:02,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:35:59] 2025-06-05 00:05:02,462 | INFO     | [job] control thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:02,660 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:02,674 | INFO     | [job] validate thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:02,929 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:02,954 | INFO     | [payload] control thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,069 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,080 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,212 | INFO     | [data] control thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,226 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,362 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:35:59] 2025-06-05 00:05:03,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:03,687 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:04,417 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:06,395 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:35:59] 2025-06-05 00:05:07,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140602156865344)>', '<ExcThread(monitor, started 140601559332608)>']
[2025-06-05 02:35:59] 2025-06-05 00:05:07,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:35:59] 2025-06-05 00:05:07,569 | INFO     | [monitor] control thread has ended
[2025-06-05 02:35:59] 2025-06-05 00:05:12,186 | INFO     | all workflow threads have been joined
[2025-06-05 02:35:59] 2025-06-05 00:05:12,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:35:59] 2025-06-05 00:05:12,186 | INFO     | traces error code: 0
[2025-06-05 02:35:59] 2025-06-05 00:05:12,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:35:59] 2025-06-05 00:05:12,530 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:35:59] 2025-06-05 00:05:12,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:35:59] 2025-06-05 00:05:12,655 [wrapper] pilotpid: 6779
[2025-06-05 02:35:59] 2025-06-05 00:05:12,682 [wrapper] Pilot exit status: 0
[2025-06-05 02:35:59] 2025-06-05 00:05:12,961 [wrapper] pandaids: 6678313124
[2025-06-05 02:35:59] 2025-06-05 00:05:13,988 [wrapper] cleanup supervisor_pilot 29242 6780
[2025-06-05 02:35:59] 2025-06-05 00:05:14,097 [wrapper] Test setup, not cleaning
[2025-06-05 02:35:59] 2025-06-05 00:05:14,180 [wrapper] apfmon messages muted
[2025-06-05 02:35:59] 2025-06-05 00:05:14,284 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:35:59] 2025-06-05 00:05:14,396 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:35:59]  *** Error codes and diagnostics ***
[2025-06-05 02:35:59]     "exeErrorCode": 0,
[2025-06-05 02:35:59]     "exeErrorDiag": "",
[2025-06-05 02:35:59]     "pilotErrorCode": 0,
[2025-06-05 02:35:59]     "pilotErrorDiag": "",
[2025-06-05 02:35:59]  *** Listing of results directory ***
[2025-06-05 02:35:59] total 388328
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-05 02:35:59] -rwx------. 1 boinc boinc     37140 Jun  4 06:15 runpilot2-wrapper.sh
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:15 queuedata.json
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:35:59] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:16 run_atlas
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:16 job.xml
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc      6392 Jun  4 22:16 init_data.xml
[2025-06-05 02:35:59] -rw-r--r--. 2 boinc boinc 214191031 Jun  4 22:16 EVNT.45006593._002091.pool.root.1
[2025-06-05 02:35:59] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:16 start_atlas.sh
[2025-06-05 02:35:59] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:16 shared
[2025-06-05 02:35:59] -rw-r--r--. 2 boinc boinc    508876 Jun  4 22:16 input.tar.gz
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:16 boinc_lockfile
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc      2525 Jun  4 22:16 pandaJob.out
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc    987032 Jun  4 22:16 agis_schedconf.cvmfs.json
[2025-06-05 02:35:59] drwx------. 4 boinc boinc      4096 Jun  4 22:16 pilot3
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc 176499741 Jun  5 02:01 HITS.45006595._052218.pool.root.1
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc       530 Jun  5 02:02 boinc_task_state.xml
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc      1030 Jun  5 02:03 memory_monitor_summary.json
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc   1598969 Jun  5 02:03 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc    386332 Jun  5 02:03 log.45006595._052218.job.log.tgz.1
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc        95 Jun  5 02:04 pilot_heartbeat.json
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc      7697 Jun  5 02:04 heartbeat.json
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc      4416 Jun  5 02:05 pilotlog.txt
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc   1184633 Jun  5 02:05 log.45006595._052218.job.log.1
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc       357 Jun  5 02:05 output.list
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc       620 Jun  5 02:05 runtime_log
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc   1587200 Jun  5 02:05 result.tar.gz
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc       657 Jun  5 02:05 t7lNDmgiug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPAnKDmcgYa7m.diag
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc      8659 Jun  5 02:05 runtime_log.err
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc      8192 Jun  5 02:35 boinc_mmap_file
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc        28 Jun  5 02:35 wrapper_checkpoint.txt
[2025-06-05 02:35:59] -rw-r--r--. 1 boinc boinc     20540 Jun  5 02:35 stderr.txt
[2025-06-05 02:35:59] HITS file was successfully produced:
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc 176499741 Jun  5 02:01 shared/HITS.pool.root.1
[2025-06-05 02:35:59]  *** Contents of shared directory: ***
[2025-06-05 02:35:59] total 383604
[2025-06-05 02:35:59] -rw-r--r--. 2 boinc boinc 214191031 Jun  4 22:16 ATLAS.root_0
[2025-06-05 02:35:59] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:16 start_atlas.sh
[2025-06-05 02:35:59] -rw-r--r--. 2 boinc boinc    508876 Jun  4 22:16 input.tar.gz
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc 176499741 Jun  5 02:01 HITS.pool.root.1
[2025-06-05 02:35:59] -rw-------. 1 boinc boinc   1587200 Jun  5 02:05 result.tar.gz
02:36:01 (3093): run_atlas exited; CPU time 51051.579380
02:36:01 (3093): called boinc_finish(0)

</stderr_txt>
]]>

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