Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:39:51 (661654): wrapper (7.7.26015): starting
22:39:51 (661654): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 22:39:51] Arguments: --nthreads 12
[2025-06-04 22:39:51] Threads: 12
[2025-06-04 22:39:51] Checking for CVMFS
[2025-06-04 22:39:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:39:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:39:52] 2.12.7.0 2877684 2884 93224 146793 3 56 3550369 4097025 0 130560 0 4732461 99.995 683227 8049 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-06-04 22:39:52] CVMFS is ok
[2025-06-04 22:39:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 22:39:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 22:39:52] Further information can be found at the LHC@home message board.
[2025-06-04 22:39:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:39:52] Checking for apptainer binary...
[2025-06-04 22:39:52] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-06-04 22:39:52] apptainer is not installed, using version from CVMFS
[2025-06-04 22:39:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:39:52] pckelar2.cern.ch
[2025-06-04 22:39:52] apptainer works
[2025-06-04 22:39:52] Set ATHENA_PROC_NUMBER=12
[2025-06-04 22:39:52] Set ATHENA_CORE_NUMBER=12
[2025-06-04 22:39:52] Starting ATLAS job with PandaID=6678287270
[2025-06-04 22:39:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:19:55]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:19:55]  is_altstaged=None
[2025-06-04 23:19:55]  is_tar=False
[2025-06-04 23:19:55]  lfn=log.45006595._051917.job.log.tgz.1
[2025-06-04 23:19:55]  mtime=0
[2025-06-04 23:19:55]  protocol_id=None
[2025-06-04 23:19:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 23:19:55]  replicas=None
[2025-06-04 23:19:55]  scope=mc23_13p6TeV
[2025-06-04 23:19:55]  status=None
[2025-06-04 23:19:55]  status_code=0
[2025-06-04 23:19:55]  storage_token=
[2025-06-04 23:19:55]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6678287270/log.45006595._051917.job.log.tgz.1
[2025-06-04 23:19:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/1b/log.45006595._051917.job.log.tgz.1
[2025-06-04 23:19:55]  workdir=None
[2025-06-04 23:19:55] ]
[2025-06-04 23:19:55] 2025-06-04 21:19:32,774 | INFO     | transferring file log.45006595._051917.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6678287270/log.45006595._051917.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-04 23:19:55] 2025-06-04 21:19:32,774 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6678287270/log.45006595._051917.job.log.tgz.1 /var/lib/boinc/slots/0/log.45006595._051917.job
[2025-06-04 23:19:55] 2025-06-04 21:19:32,785 | INFO     | adding to output.list: log.45006595._051917.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/1b/log.45006595._051917.job.log.tg
[2025-06-04 23:19:55] 2025-06-04 21:19:32,786 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 23:19:55] 2025-06-04 21:19:32,786 | INFO     | summary of transferred files:
[2025-06-04 23:19:55] 2025-06-04 21:19:32,786 | INFO     |  -- lfn=log.45006595._051917.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 23:19:55] 2025-06-04 21:19:32,786 | INFO     | stage-out finished correctly
[2025-06-04 23:19:55] 2025-06-04 21:19:33,974 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 23:19:55] 2025-06-04 21:19:34,941 | WARNING  | process 672727 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 23:19:55] 2025-06-04 21:19:34,941 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678287270/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:19:55] 2025-06-04 21:19:35,004 | INFO     | number of running child processes to parent process 672727: 1
[2025-06-04 23:19:55] 2025-06-04 21:19:35,004 | INFO     | maximum number of monitored processes: 6
[2025-06-04 23:19:55] 2025-06-04 21:19:36,384 | INFO     | job 6678287270 has state=finished
[2025-06-04 23:19:55] 2025-06-04 21:19:36,384 | INFO     | preparing for final server update for job 6678287270 in state='finished'
[2025-06-04 23:19:55] 2025-06-04 21:19:36,385 | INFO     | this job has now completed (state=finished)
[2025-06-04 23:19:55] 2025-06-04 21:19:36,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 23:19:55] 2025-06-04 21:19:36,385 | INFO     | log transfer has been attempted: DONE
[2025-06-04 23:19:55] 2025-06-04 21:19:36,385 | INFO     | job 6678287270 has finished - writing final server update
[2025-06-04 23:19:55] 2025-06-04 21:19:36,385 | INFO     | total number of processed events: 400 (read)
[2025-06-04 23:19:55] 2025-06-04 21:19:36,387 | INFO     | executing command: lscpu
[2025-06-04 23:19:55] 2025-06-04 21:19:36,411 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 23:19:55] 2025-06-04 21:19:37,506 | INFO     | monitor loop #184: job 0:6678287270 is in state 'finished'
[2025-06-04 23:19:55] 2025-06-04 21:19:37,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,009 | INFO     | monitor loop #185: job 0:6678287270 is in state 'finished'
[2025-06-04 23:19:55] 2025-06-04 21:19:40,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,572 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 23:19:55] 2025-06-04 21:19:40,572 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678287270/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,572 | INFO     | extracted standard info from prmon json
[2025-06-04 23:19:55] 2025-06-04 21:19:40,572 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:19:55] 2025-06-04 21:19:40,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:19:55] 2025-06-04 21:19:40,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:19:55] 2025-06-04 21:19:40,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | sum of square deviations: 10150888.0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | sum of deviations: -611140456.0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | mean x: 1749070872.5
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | mean y: 3126543.5
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | -- intersect: 105307014301.49397
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | intersect: 105307014301.49397
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | chi2: 0.031535199314743474
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | -- intersect: 105307014301.49397
[2025-06-04 23:19:55] 2025-06-04 21:19:40,574 | INFO     | current memory leak: -60.21 B/s (using 32 data points, chi2=0.03)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | ..............................
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . Timing measurements:
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . get job = 0 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . initial setup = 1 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . payload setup = 5 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . stage-in = 0 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . payload execution = 2349 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . stage-out = 0 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | . log creation = 0 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,575 | INFO     | ..............................
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | 
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | job summary report
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | --------------------------------------------------
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | PanDA job id: 6678287270
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | task id: 45006595
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | errors: (none)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | pilot state: finished 
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | transexitcode: 0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | exeerrorcode: 0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | exeerrordiag: 
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | exitcode: 0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | exitmsg: OK
[2025-06-04 23:19:55] 2025-06-04 21:19:40,945 | INFO     | cpuconsumptiontime: 25243 s
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | nevents: 400
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | neventsw: 0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | pid: 672727
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | pgrp: 672727
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | corecount: 12
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | event service: False
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | sizes: {0: 2397342, 3: 2397548, 11: 2397576, 2359: 2422639, 2361: 2431580, 2362: 2431636, 2368: 2431934}
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | --------------------------------------------------
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | 
[2025-06-04 23:19:55] 2025-06-04 21:19:40,946 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-04 23:19:55] 2025-06-04 21:19:40,961 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,961 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,962 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,963 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,963 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:19:55] 2025-06-04 21:19:40,963 | INFO     | job 6678287270 has completed (purged errors)
[2025-06-04 23:19:55] 2025-06-04 21:19:40,963 | INFO     | overall cleanup function is called
[2025-06-04 23:19:55] 2025-06-04 21:19:41,969 | INFO     | --- collectZombieJob: --- 10, [672727]
[2025-06-04 23:19:55] 2025-06-04 21:19:41,970 | INFO     | zombie collector waiting for pid 672727
[2025-06-04 23:19:55] 2025-06-04 21:19:41,970 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:19:55] 2025-06-04 21:19:41,970 | INFO     | collected zombie processes
[2025-06-04 23:19:55] 2025-06-04 21:19:41,970 | INFO     | will attempt to kill all subprocesses of pid=672727
[2025-06-04 23:19:55] 2025-06-04 21:19:42,052 | INFO     | process IDs to be killed: [672727] (in reverse order)
[2025-06-04 23:19:55] 2025-06-04 21:19:42,083 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:19:55] 2025-06-04 21:19:42,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:19:55] 2025-06-04 21:19:42,086 | INFO     | did not find any defunct processes belonging to 672727
[2025-06-04 23:19:55] 2025-06-04 21:19:42,087 | INFO     | did not find any defunct processes belonging to 672727
[2025-06-04 23:19:55] 2025-06-04 21:19:42,087 | INFO     | ready for new job
[2025-06-04 23:19:55] 2025-06-04 21:19:42,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:19:55] 2025-06-04 21:19:42,089 | INFO     | **************************************
[2025-06-04 23:19:55] 2025-06-04 21:19:42,089 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:19:55] 2025-06-04 21:19:42,089 | INFO     | **************************************
[2025-06-04 23:19:55] 2025-06-04 21:19:42,089 | INFO     | 
[2025-06-04 23:19:55] 2025-06-04 21:19:42,090 | INFO     | architecture information:
[2025-06-04 23:19:55] 2025-06-04 21:19:42,090 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:19:55] 2025-06-04 21:19:42,099 | INFO     | cat /etc/os-release:
[2025-06-04 23:19:55] NAME="CentOS Linux"
[2025-06-04 23:19:55] VERSION="7 (Core)"
[2025-06-04 23:19:55] ID="centos"
[2025-06-04 23:19:55] ID_LIKE="rhel fedora"
[2025-06-04 23:19:55] VERSION_ID="7"
[2025-06-04 23:19:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:19:55] ANSI_COLOR="0;31"
[2025-06-04 23:19:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:19:55] HOME_URL="https://www.centos.org/"
[2025-06-04 23:19:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:19:55] 
[2025-06-04 23:19:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:19:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:19:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:19:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:19:55] 
[2025-06-04 23:19:55] 2025-06-04 21:19:42,099 | INFO     | **************************************
[2025-06-04 23:19:55] 2025-06-04 21:19:42,602 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-04 23:19:55] 2025-06-04 21:19:42,614 | INFO     | sufficient remaining disk space (233555623936 B)
[2025-06-04 23:19:55] 2025-06-04 21:19:42,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:19:55] 2025-06-04 21:19:42,614 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:19:55] 2025-06-04 21:19:42,614 | INFO     | update_server=False
[2025-06-04 23:19:55] 2025-06-04 21:19:42,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:19:55] 2025-06-04 21:19:42,615 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 23:19:55] 2025-06-04 21:19:42,615 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:19:55] 2025-06-04 21:19:42,615 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:19:55] 2025-06-04 21:19:42,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:19:55] 2025-06-04 21:19:42,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:19:55] 2025-06-04 21:19:42,741 | INFO     | all data control threads have been joined
[2025-06-04 23:19:55] 2025-06-04 21:19:42,781 | INFO     | all job control threads have been joined
[2025-06-04 23:19:55] 2025-06-04 21:19:43,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:19:55] 2025-06-04 21:19:43,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:19:55] 2025-06-04 21:19:43,518 | INFO     | aborting loop
[2025-06-04 23:19:55] 2025-06-04 21:19:43,620 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:43,621 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:43,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:43,746 | INFO     | [data] control thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:43,786 | INFO     | [job] control thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:43,822 | INFO     | all payload control threads have been joined
[2025-06-04 23:19:55] 2025-06-04 21:19:43,843 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,379 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,405 | INFO     | [job] validate thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,523 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:19:55] 2025-06-04 21:19:44,632 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,706 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,816 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,828 | INFO     | [payload] control thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:44,921 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:45,351 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:48,529 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:19:55] 2025-06-04 21:19:49,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134158608192)>', '<ExcThread(monitor, started 140133609223936)>']
[2025-06-04 23:19:55] 2025-06-04 21:19:50,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:19:55] 2025-06-04 21:19:50,657 | INFO     | [monitor] control thread has ended
[2025-06-04 23:19:55] 2025-06-04 21:19:54,919 | INFO     | all workflow threads have been joined
[2025-06-04 23:19:55] 2025-06-04 21:19:54,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:19:55] 2025-06-04 21:19:54,919 | INFO     | traces error code: 0
[2025-06-04 23:19:55] 2025-06-04 21:19:54,920 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:19:55] 2025-06-04 21:19:54,995 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:19:55] 2025-06-04 21:19:54,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:19:55] 2025-06-04 21:19:54,999 [wrapper] pilotpid: 665415
[2025-06-04 23:19:55] 2025-06-04 21:19:55,001 [wrapper] Pilot exit status: 0
[2025-06-04 23:19:55] 2025-06-04 21:19:55,010 [wrapper] pandaids: 6678287270
[2025-06-04 23:19:55] 2025-06-04 21:19:55,030 [wrapper] cleanup supervisor_pilot  683091 665416
[2025-06-04 23:19:55] 2025-06-04 21:19:55,032 [wrapper] Test setup, not cleaning
[2025-06-04 23:19:55] 2025-06-04 21:19:55,034 [wrapper] apfmon messages muted
[2025-06-04 23:19:55] 2025-06-04 21:19:55,036 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:19:55] 2025-06-04 21:19:55,038 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:19:55]  *** Error codes and diagnostics ***
[2025-06-04 23:19:55]     "exeErrorCode": 0,
[2025-06-04 23:19:55]     "exeErrorDiag": "",
[2025-06-04 23:19:55]     "pilotErrorCode": 0,
[2025-06-04 23:19:55]     "pilotErrorDiag": "",
[2025-06-04 23:19:55]  *** Listing of results directory ***
[2025-06-04 23:19:55] total 393112
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-04 23:19:55] -rwx------ 1 boinc boinc     37140 Jun  4 06:07 runpilot2-wrapper.sh
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc      5111 Jun  4 06:07 queuedata.json
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc       100 Jun  4 22:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:19:55] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 22:39 run_atlas
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc       105 Jun  4 22:39 job.xml
[2025-06-04 23:19:55] -rw-r--r-- 2 boinc boinc     15093 Jun  4 22:39 start_atlas.sh
[2025-06-04 23:19:55] drwxrwx--x 2 boinc boinc        68 Jun  4 22:39 shared
[2025-06-04 23:19:55] -rw-r--r-- 2 boinc boinc    508879 Jun  4 22:39 input.tar.gz
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc      6471 Jun  4 22:39 init_data.xml
[2025-06-04 23:19:55] -rw-r--r-- 2 boinc boinc 214864107 Jun  4 22:39 EVNT.45006593._002080.pool.root.1
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc         0 Jun  4 22:39 boinc_lockfile
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc      2525 Jun  4 22:39 pandaJob.out
[2025-06-04 23:19:55] -rw------- 1 boinc boinc    987032 Jun  4 22:39 agis_schedconf.cvmfs.json
[2025-06-04 23:19:55] -rw------- 1 boinc boinc   1598969 Jun  4 22:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:19:55] drwx------ 4 boinc boinc      4096 Jun  4 22:39 pilot3
[2025-06-04 23:19:55] -rw------- 1 boinc boinc 182673791 Jun  4 23:19 HITS.45006595._051917.pool.root.1
[2025-06-04 23:19:55] -rw------- 1 boinc boinc        95 Jun  4 23:19 pilot_heartbeat.json
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc       529 Jun  4 23:19 boinc_task_state.xml
[2025-06-04 23:19:55] -rw------- 1 boinc boinc      1017 Jun  4 23:19 memory_monitor_summary.json
[2025-06-04 23:19:55] -rw------- 1 boinc boinc    340006 Jun  4 23:19 log.45006595._051917.job.log.tgz.1
[2025-06-04 23:19:55] -rw------- 1 boinc boinc      7694 Jun  4 23:19 heartbeat.json
[2025-06-04 23:19:55] -rw------- 1 boinc boinc      4477 Jun  4 23:19 pilotlog.txt
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc      8192 Jun  4 23:19 boinc_mmap_file
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc        27 Jun  4 23:19 wrapper_checkpoint.txt
[2025-06-04 23:19:55] -rw------- 1 boinc boinc    253834 Jun  4 23:19 log.45006595._051917.job.log.1
[2025-06-04 23:19:55] -rw------- 1 boinc boinc       357 Jun  4 23:19 output.list
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc       620 Jun  4 23:19 runtime_log
[2025-06-04 23:19:55] -rw------- 1 boinc boinc    614400 Jun  4 23:19 result.tar.gz
[2025-06-04 23:19:55] -rw------- 1 boinc boinc       653 Jun  4 23:19 xZgNDmiaug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk6mKDmXw8GPo.diag
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc      8683 Jun  4 23:19 runtime_log.err
[2025-06-04 23:19:55] -rw-r--r-- 1 boinc boinc     21526 Jun  4 23:19 stderr.txt
[2025-06-04 23:19:55] HITS file was successfully produced:
[2025-06-04 23:19:55] -rw------- 1 boinc boinc 182673791 Jun  4 23:19 shared/HITS.pool.root.1
[2025-06-04 23:19:55]  *** Contents of shared directory: ***
[2025-06-04 23:19:55] total 389344
[2025-06-04 23:19:55] -rw-r--r-- 2 boinc boinc     15093 Jun  4 22:39 start_atlas.sh
[2025-06-04 23:19:55] -rw-r--r-- 2 boinc boinc    508879 Jun  4 22:39 input.tar.gz
[2025-06-04 23:19:55] -rw-r--r-- 2 boinc boinc 214864107 Jun  4 22:39 ATLAS.root_0
[2025-06-04 23:19:55] -rw------- 1 boinc boinc 182673791 Jun  4 23:19 HITS.pool.root.1
[2025-06-04 23:19:55] -rw------- 1 boinc boinc    614400 Jun  4 23:19 result.tar.gz
23:19:56 (661654): run_atlas exited; CPU time 25242.747140
23:19:56 (661654): called boinc_finish(0)

</stderr_txt>
]]>

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