Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:00:02 (25746): wrapper (7.7.26015): starting
00:00:02 (25746): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:00:02] Arguments: --nthreads 8
[2025-06-05 00:00:02] Threads: 8
[2025-06-05 00:00:02] Checking for CVMFS
[2025-06-05 00:00:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:00:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:00:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:00:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:00:03] 2.11.2.0 16647 33946 98828 146795 3 202 20232754 25165825 2471 130560 0 18260142 99.743 21778574 4847 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:00:03] CVMFS is ok
[2025-06-05 00:00:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:00:03] Checking for apptainer binary...
[2025-06-05 00:00:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:00:03] Running /usr/bin/apptainer --version
[2025-06-05 00:00:03] apptainer version 1.3.2-1.el7
[2025-06-05 00:00:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:00:05] cg-vwn490.simple-grid.lan
[2025-06-05 00:00:05] apptainer works
[2025-06-05 00:00:05] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:00:05] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:00:05] Starting ATLAS job with PandaID=6678287285
[2025-06-05 00:00:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:07:04]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:07:04] 2025-06-05 01:28:03,482 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6678287285/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,483 | INFO     | extracted standard info from prmon json
[2025-06-05 05:07:04] 2025-06-05 01:28:03,483 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:07:04] 2025-06-05 01:28:03,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:07:04] 2025-06-05 01:28:03,483 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:07:04] 2025-06-05 01:28:03,484 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:07:04] 2025-06-05 01:28:03,487 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:07:04] 2025-06-05 01:28:03,488 | INFO     | sum of square deviations: 2555770710.5
[2025-06-05 05:07:04] 2025-06-05 01:28:03,490 | INFO     | sum of deviations: 17452655771.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,490 | INFO     | mean x: 1749080609.5
[2025-06-05 05:07:04] 2025-06-05 01:28:03,490 | INFO     | mean y: 2457045.5445544557
[2025-06-05 05:07:04] 2025-06-05 01:28:03,490 | INFO     | -- intersect: -11941533731.062468
[2025-06-05 05:07:04] 2025-06-05 01:28:03,490 | INFO     | intersect: -11941533731.062468
[2025-06-05 05:07:04] 2025-06-05 01:28:03,490 | INFO     | chi2: 2.2359716807164873
[2025-06-05 05:07:04] 2025-06-05 01:28:03,491 | INFO     | sum of square deviations: 2370641658.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,492 | INFO     | sum of deviations: 30170087965.999996
[2025-06-05 05:07:04] 2025-06-05 01:28:03,492 | INFO     | mean x: 1749080457.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,492 | INFO     | mean y: 2467301.3553299494
[2025-06-05 05:07:04] 2025-06-05 01:28:03,493 | INFO     | -- intersect: -22257291388.543415
[2025-06-05 05:07:04] 2025-06-05 01:28:03,493 | INFO     | intersect: -22257291388.543415
[2025-06-05 05:07:04] 2025-06-05 01:28:03,493 | INFO     | chi2: 1.4591470446311767
[2025-06-05 05:07:04] 2025-06-05 01:28:03,493 | INFO     | current chi2=1.4591470446311767 (change=34.742150036371996 %)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,493 | INFO     | sum of square deviations: 2194675568.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | sum of deviations: 29344458456.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | mean x: 1749080304.5
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | mean y: 2466585.7708333335
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | -- intersect: -23384048979.4346
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | intersect: -23384048979.4346
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | chi2: 1.459978684718069
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | current chi2=1.459978684718069 (change=-0.05699494714752297 %)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,495 | INFO     | right removable region: 191
[2025-06-05 05:07:04] 2025-06-05 01:28:03,496 | INFO     | sum of square deviations: 2370641658.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,497 | INFO     | sum of deviations: -11783413492.999998
[2025-06-05 05:07:04] 2025-06-05 01:28:03,497 | INFO     | mean x: 1749080762.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,497 | INFO     | mean y: 2480836.949238579
[2025-06-05 05:07:04] 2025-06-05 01:28:03,497 | INFO     | -- intersect: 8696389417.247002
[2025-06-05 05:07:04] 2025-06-05 01:28:03,497 | INFO     | intersect: 8696389417.247002
[2025-06-05 05:07:04] 2025-06-05 01:28:03,498 | INFO     | chi2: 0.8339009840490648
[2025-06-05 05:07:04] 2025-06-05 01:28:03,498 | INFO     | current chi2=0.8339009840490648 (change=62.705208154431894 %)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,498 | INFO     | sum of square deviations: 2194675568.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,499 | INFO     | sum of deviations: -6700986396.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,500 | INFO     | mean x: 1749080914.5
[2025-06-05 05:07:04] 2025-06-05 01:28:03,500 | INFO     | mean y: 2476398.15625
[2025-06-05 05:07:04] 2025-06-05 01:28:03,500 | INFO     | -- intersect: 5342931991.895168
[2025-06-05 05:07:04] 2025-06-05 01:28:03,500 | INFO     | intersect: 5342931991.895168
[2025-06-05 05:07:04] 2025-06-05 01:28:03,509 | INFO     | chi2: 0.8007868905273592
[2025-06-05 05:07:04] 2025-06-05 01:28:03,510 | INFO     | current chi2=0.8007868905273592 (change=3.970986262771603 %)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,510 | INFO     | left removable region: 20
[2025-06-05 05:07:04] 2025-06-05 01:28:03,510 | INFO     | sum of square deviations: 1550429070.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,511 | INFO     | sum of deviations: 3498548188.999997
[2025-06-05 05:07:04] 2025-06-05 01:28:03,511 | INFO     | mean x: 1749080884.0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,511 | INFO     | mean y: 2489811.2807017546
[2025-06-05 05:07:04] 2025-06-05 01:28:03,512 | INFO     | -- intersect: -3944316835.6900716
[2025-06-05 05:07:04] 2025-06-05 01:28:03,512 | INFO     | intersect: -3944316835.6900716
[2025-06-05 05:07:04] 2025-06-05 01:28:03,512 | INFO     | chi2: 0.0004568932399495348
[2025-06-05 05:07:04] 2025-06-05 01:28:03,512 | INFO     | -- intersect: -3944316835.6900716
[2025-06-05 05:07:04] 2025-06-05 01:28:03,512 | INFO     | current memory leak: 2.26 B/s (using 171 data points, chi2=0.00)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,513 | INFO     | ..............................
[2025-06-05 05:07:04] 2025-06-05 01:28:03,513 | INFO     | . Timing measurements:
[2025-06-05 05:07:04] 2025-06-05 01:28:03,513 | INFO     | . get job = 0 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,513 | INFO     | . initial setup = 2 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,513 | INFO     | . payload setup = 15 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,513 | INFO     | . stage-in = 0 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,514 | INFO     | . payload execution = 12325 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,514 | INFO     | . stage-out = 5 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,514 | INFO     | . log creation = 1 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,514 | INFO     | ..............................
[2025-06-05 05:07:04] 2025-06-05 01:28:03,654 | INFO     | 
[2025-06-05 05:07:04] 2025-06-05 01:28:03,654 | INFO     | job summary report
[2025-06-05 05:07:04] 2025-06-05 01:28:03,654 | INFO     | --------------------------------------------------
[2025-06-05 05:07:04] 2025-06-05 01:28:03,654 | INFO     | PanDA job id: 6678287285
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | task id: 45006595
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | errors: (none)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | pilot state: finished 
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | transexitcode: 0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | exeerrorcode: 0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | exeerrordiag: 
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | exitcode: 0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | exitmsg: OK
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | cpuconsumptiontime: 46874 s
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | nevents: 400
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | neventsw: 0
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | pid: 5588
[2025-06-05 05:07:04] 2025-06-05 01:28:03,655 | INFO     | pgrp: 5588
[2025-06-05 05:07:04] 2025-06-05 01:28:03,656 | INFO     | corecount: 8
[2025-06-05 05:07:04] 2025-06-05 01:28:03,656 | INFO     | event service: False
[2025-06-05 05:07:04] 2025-06-05 01:28:03,656 | INFO     | sizes: {0: 2397169, 1: 2397368, 9: 2397574, 12: 2397602, 12345: 2426751, 12351: 2435720, 12352: 2435904, 12439: 2436074}
[2025-06-05 05:07:04] 2025-06-05 01:28:03,656 | INFO     | --------------------------------------------------
[2025-06-05 05:07:04] 2025-06-05 01:28:03,656 | INFO     | 
[2025-06-05 05:07:04] 2025-06-05 01:28:03,656 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 05:07:04] 2025-06-05 01:28:03,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,958 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:07:04] 2025-06-05 01:28:03,959 | INFO     | job 6678287285 has completed (purged errors)
[2025-06-05 05:07:04] 2025-06-05 01:28:03,959 | INFO     | overall cleanup function is called
[2025-06-05 05:07:04] 2025-06-05 01:28:04,968 | INFO     | --- collectZombieJob: --- 10, [5588]
[2025-06-05 05:07:04] 2025-06-05 01:28:04,968 | INFO     | zombie collector waiting for pid 5588
[2025-06-05 05:07:04] 2025-06-05 01:28:04,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:07:04] 2025-06-05 01:28:04,969 | INFO     | collected zombie processes
[2025-06-05 05:07:04] 2025-06-05 01:28:04,969 | INFO     | will attempt to kill all subprocesses of pid=5588
[2025-06-05 05:07:04] 2025-06-05 01:28:05,073 | INFO     | process IDs to be killed: [5588] (in reverse order)
[2025-06-05 05:07:04] 2025-06-05 01:28:05,870 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:07:04] 2025-06-05 01:28:05,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:07:04] 2025-06-05 01:28:05,873 | INFO     | did not find any defunct processes belonging to 5588
[2025-06-05 05:07:04] 2025-06-05 01:28:05,876 | INFO     | did not find any defunct processes belonging to 5588
[2025-06-05 05:07:04] 2025-06-05 01:28:05,877 | INFO     | ready for new job
[2025-06-05 05:07:04] 2025-06-05 01:28:05,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:07:04] 2025-06-05 01:28:05,879 | INFO     | **************************************
[2025-06-05 05:07:04] 2025-06-05 01:28:05,879 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 05:07:04] 2025-06-05 01:28:05,879 | INFO     | **************************************
[2025-06-05 05:07:04] 2025-06-05 01:28:05,879 | INFO     | 
[2025-06-05 05:07:04] 2025-06-05 01:28:05,880 | INFO     | pilot is running in a VM
[2025-06-05 05:07:04] 2025-06-05 01:28:05,880 | INFO     | architecture information:
[2025-06-05 05:07:04] 2025-06-05 01:28:05,888 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:07:04] 2025-06-05 01:28:06,106 | INFO     | cat /etc/os-release:
[2025-06-05 05:07:04] NAME="CentOS Linux"
[2025-06-05 05:07:04] VERSION="7 (Core)"
[2025-06-05 05:07:04] ID="centos"
[2025-06-05 05:07:04] ID_LIKE="rhel fedora"
[2025-06-05 05:07:04] VERSION_ID="7"
[2025-06-05 05:07:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:07:04] ANSI_COLOR="0;31"
[2025-06-05 05:07:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:07:04] HOME_URL="https://www.centos.org/"
[2025-06-05 05:07:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:07:04] 
[2025-06-05 05:07:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:07:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:07:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:07:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:07:04] 
[2025-06-05 05:07:04] 2025-06-05 01:28:06,106 | INFO     | **************************************
[2025-06-05 05:07:04] 2025-06-05 01:28:06,609 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 05:07:04] 2025-06-05 01:28:06,835 | INFO     | sufficient remaining disk space (497276682240 B)
[2025-06-05 05:07:04] 2025-06-05 01:28:06,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:07:04] 2025-06-05 01:28:06,835 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:07:04] 2025-06-05 01:28:06,835 | INFO     | update_server=False
[2025-06-05 05:07:04] 2025-06-05 01:28:06,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:07:04] 2025-06-05 01:28:06,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:07:04] 2025-06-05 01:28:06,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:07:04] 2025-06-05 01:28:06,857 | INFO     | aborting loop
[2025-06-05 05:07:04] 2025-06-05 01:28:07,106 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:07:04] 2025-06-05 01:28:07,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:07:04] 2025-06-05 01:28:07,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:07:04] 2025-06-05 01:28:07,193 | INFO     | all payload control threads have been joined
[2025-06-05 05:07:04] 2025-06-05 01:28:07,479 | INFO     | all job control threads have been joined
[2025-06-05 05:07:04] 2025-06-05 01:28:07,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:07:04] 2025-06-05 01:28:07,816 | INFO     | all data control threads have been joined
[2025-06-05 05:07:04] 2025-06-05 01:28:07,841 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:07,862 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:07,923 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,182 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,199 | INFO     | [payload] control thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,485 | INFO     | [job] control thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:07:04] 2025-06-05 01:28:08,822 | INFO     | [data] control thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,843 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,857 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:08,967 | INFO     | [job] validate thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:09,208 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:09,209 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:09,253 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:09,674 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:11,760 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:07:04] 2025-06-05 01:28:13,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492695582528)>', '<ExcThread(monitor, started 140492255778560)>']
[2025-06-05 05:07:04] 2025-06-05 01:28:14,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:07:04] 2025-06-05 01:28:14,146 | INFO     | [monitor] control thread has ended
[2025-06-05 05:07:04] 2025-06-05 01:28:18,243 | INFO     | all workflow threads have been joined
[2025-06-05 05:07:04] 2025-06-05 01:28:18,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:07:04] 2025-06-05 01:28:18,244 | INFO     | traces error code: 0
[2025-06-05 05:07:04] 2025-06-05 01:28:18,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:07:04] 2025-06-05 01:28:18,630 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:07:04] 2025-06-05 01:28:18,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:07:04] 2025-06-05 01:28:18,840 [wrapper] pilotpid: 29397
[2025-06-05 05:07:04] 2025-06-05 01:28:18,950 [wrapper] Pilot exit status: 0
[2025-06-05 05:07:04] 2025-06-05 01:28:19,392 [wrapper] pandaids: 6678287285
[2025-06-05 05:07:04] 2025-06-05 01:28:20,157 [wrapper] cleanup supervisor_pilot  2691 29398
[2025-06-05 05:07:04] 2025-06-05 01:28:20,212 [wrapper] Test setup, not cleaning
[2025-06-05 05:07:04] 2025-06-05 01:28:20,257 [wrapper] apfmon messages muted
[2025-06-05 05:07:04] 2025-06-05 01:28:20,306 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:07:04] 2025-06-05 01:28:20,354 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:07:04]  *** Error codes and diagnostics ***
[2025-06-05 05:07:04]     "exeErrorCode": 0,
[2025-06-05 05:07:04]     "exeErrorDiag": "",
[2025-06-05 05:07:04]     "pilotErrorCode": 0,
[2025-06-05 05:07:04]     "pilotErrorDiag": "",
[2025-06-05 05:07:04]  *** Listing of results directory ***
[2025-06-05 05:07:04] total 394064
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc      5111 Jun  4 06:09 queuedata.json
[2025-06-05 05:07:04] -rwx------. 1 boinc boinc     37140 Jun  4 06:10 runpilot2-wrapper.sh
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:07:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:00 run_atlas
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:00 job.xml
[2025-06-05 05:07:04] -rw-r--r--. 2 boinc boinc 216387277 Jun  5 00:00 EVNT.45006593._002081.pool.root.1
[2025-06-05 05:07:04] -rw-r--r--. 2 boinc boinc    508881 Jun  5 00:00 input.tar.gz
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc      6392 Jun  5 00:00 init_data.xml
[2025-06-05 05:07:04] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:00 start_atlas.sh
[2025-06-05 05:07:04] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:00 shared
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:00 boinc_lockfile
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc      2524 Jun  5 00:00 pandaJob.out
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc    987032 Jun  5 00:00 agis_schedconf.cvmfs.json
[2025-06-05 05:07:04] drwx------. 4 boinc boinc      4096 Jun  5 00:00 pilot3
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc 180428887 Jun  5 03:25 HITS.45006595._051932.pool.root.1
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:25 boinc_task_state.xml
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc      1018 Jun  5 03:26 memory_monitor_summary.json
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc   1598969 Jun  5 03:26 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc    359935 Jun  5 03:26 log.45006595._051932.job.log.tgz.1
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc        95 Jun  5 03:27 pilot_heartbeat.json
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc      7686 Jun  5 03:28 heartbeat.json
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc      4416 Jun  5 03:28 pilotlog.txt
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc   1088013 Jun  5 03:28 log.45006595._051932.job.log.1
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc       357 Jun  5 03:28 output.list
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:28 runtime_log
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc   1464320 Jun  5 03:28 result.tar.gz
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc      8659 Jun  5 03:28 runtime_log.err
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc       656 Jun  5 03:28 B0qNDmddug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmv7mKDmRDStNo.diag
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc      8192 Jun  5 05:07 boinc_mmap_file
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc        28 Jun  5 05:07 wrapper_checkpoint.txt
[2025-06-05 05:07:04] -rw-r--r--. 1 boinc boinc     20479 Jun  5 05:07 stderr.txt
[2025-06-05 05:07:04] HITS file was successfully produced:
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc 180428887 Jun  5 03:25 shared/HITS.pool.root.1
[2025-06-05 05:07:04]  *** Contents of shared directory: ***
[2025-06-05 05:07:04] total 389468
[2025-06-05 05:07:04] -rw-r--r--. 2 boinc boinc 216387277 Jun  5 00:00 ATLAS.root_0
[2025-06-05 05:07:04] -rw-r--r--. 2 boinc boinc    508881 Jun  5 00:00 input.tar.gz
[2025-06-05 05:07:04] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:00 start_atlas.sh
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc 180428887 Jun  5 03:25 HITS.pool.root.1
[2025-06-05 05:07:04] -rw-------. 1 boinc boinc   1464320 Jun  5 03:28 result.tar.gz
05:07:06 (25746): run_atlas exited; CPU time 47018.210792
05:07:06 (25746): called boinc_finish(0)

</stderr_txt>
]]>

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