Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:12:41 (3724695): wrapper (7.7.26015): starting
20:12:41 (3724695): wrapper: running run_atlas (--nthreads 3)
[2025-06-06 20:12:41] Arguments: --nthreads 3
[2025-06-06 20:12:41] Threads: 3
[2025-06-06 20:12:41] Checking for CVMFS
[2025-06-06 20:13:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 20:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 20:13:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 20:13:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 20:13:33] 2.11.5.0 3724914 0 30772 146854 3 1 25154090 31457280 0 130560 0 0 0.000 1292 61 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-06 20:13:33] CVMFS is ok
[2025-06-06 20:13:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 20:13:33] Checking for apptainer binary...
[2025-06-06 20:13:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-06 20:13:33] Running /usr/bin/apptainer --version
[2025-06-06 20:13:33] apptainer version 1.3.4-1.el9
[2025-06-06 20:13:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 20:13:33] testio001
[2025-06-06 20:13:33] apptainer works
[2025-06-06 20:13:33] Set ATHENA_PROC_NUMBER=3
[2025-06-06 20:13:33] Set ATHENA_CORE_NUMBER=3
[2025-06-06 20:13:33] Starting ATLAS job with PandaID=6678365390
[2025-06-06 20:13:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 22:08:56]  *** The last 200 lines of the pilot log: ***
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | intersect: -143234455437.3399
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | chi2: 2.863643164415662
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | current chi2=2.863643164415662 (change=-0.01747063147649353 %)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | right removable region: 103
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | sum of square deviations: 348769330.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | sum of deviations: 9148355989.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | mean x: 1749212067.5
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | mean y: 2309165.25
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | -- intersect: -45880207780.10381
[2025-06-06 22:08:56] 2025-06-06 13:08:36,918 | INFO     | intersect: -45880207780.10381
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | chi2: 0.9058980765623665
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | current chi2=0.9058980765623665 (change=68.36001238088056 %)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | sum of square deviations: 300842850.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | sum of deviations: -4628311804.000001
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | mean x: 1749212220.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | mean y: 2353020.212121212
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | -- intersect: 26913079220.043846
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | intersect: 26913079220.043846
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | chi2: 0.1279575539014511
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | current chi2=0.1279575539014511 (change=85.87506064843247 %)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,919 | INFO     | sum of square deviations: 257521107.5
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | sum of deviations: -1332032294.9999998
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | mean x: 1749212372.5
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | mean y: 2341141.659574468
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | -- intersect: 9050171797.574137
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | intersect: 9050171797.574137
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | chi2: 0.055153448876485704
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | current chi2=0.055153448876485704 (change=56.89707469793994 %)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | sum of square deviations: 218571540.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | sum of deviations: 696938053.9999999
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | mean x: 1749212525.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | mean y: 2333485.2921348317
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | -- intersect: -5575212306.835815
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | intersect: -5575212306.835815
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | chi2: 0.0002706637963074522
[2025-06-06 22:08:56] 2025-06-06 13:08:36,920 | INFO     | current chi2=0.0002706637963074522 (change=99.5092531803159 %)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | sum of square deviations: 183761585.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | sum of deviations: 524227229.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | mean x: 1749212677.5
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | mean y: 2334242.0714285714
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | -- intersect: -4987745239.760945
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | intersect: -4987745239.760945
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | chi2: 0.0002465138804462083
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | current chi2=0.0002465138804462083 (change=8.9224773282244 %)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | left removable region: 50
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | sum of square deviations: 46147842.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | sum of deviations: 144431713.00000003
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | mean x: 1749213257.0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | mean y: 2335897.1886792453
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | -- intersect: -5472283416.772292
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | intersect: -5472283416.772292
[2025-06-06 22:08:56] 2025-06-06 13:08:36,921 | INFO     | chi2: 0.00013799629054112483
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | -- intersect: -5472283416.772292
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | current memory leak: 3.13 B/s (using 53 data points, chi2=0.00)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | ..............................
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . Timing measurements:
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . get job = 0 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . initial setup = 8 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . payload setup = 5 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . stage-in = 0 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . payload execution = 6617 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . stage-out = 0 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | . log creation = 0 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,922 | INFO     | ..............................
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | 
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | job summary report
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | --------------------------------------------------
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | PanDA job id: 6678365390
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | task id: 45006595
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | errors: (none)
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | pilot state: finished 
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | transexitcode: 0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | exeerrorcode: 0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | exeerrordiag: 
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | exitcode: 0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | exitmsg: OK
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | cpuconsumptiontime: 16515 s
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | nevents: 400
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | neventsw: 0
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | pid: 3735243
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | pgrp: 3735243
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | corecount: 3
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | event service: False
[2025-06-06 22:08:56] 2025-06-06 13:08:36,996 | INFO     | sizes: {0: 2397342, 2: 2397548, 11: 2397576, 6625: 2424538, 6626: 2433535, 6704: 2433649}
[2025-06-06 22:08:56] 2025-06-06 13:08:36,997 | INFO     | --------------------------------------------------
[2025-06-06 22:08:56] 2025-06-06 13:08:36,997 | INFO     | 
[2025-06-06 22:08:56] 2025-06-06 13:08:36,997 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | job 6678365390 has completed (purged errors)
[2025-06-06 22:08:56] 2025-06-06 13:08:37,007 | INFO     | overall cleanup function is called
[2025-06-06 22:08:56] 2025-06-06 13:08:38,011 | INFO     | --- collectZombieJob: --- 10, [3735243]
[2025-06-06 22:08:56] 2025-06-06 13:08:38,011 | INFO     | zombie collector waiting for pid 3735243
[2025-06-06 22:08:56] 2025-06-06 13:08:38,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 22:08:56] 2025-06-06 13:08:38,012 | INFO     | collected zombie processes
[2025-06-06 22:08:56] 2025-06-06 13:08:38,012 | INFO     | will attempt to kill all subprocesses of pid=3735243
[2025-06-06 22:08:56] 2025-06-06 13:08:38,044 | INFO     | process IDs to be killed: [3735243] (in reverse order)
[2025-06-06 22:08:56] 2025-06-06 13:08:38,062 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 22:08:56] 2025-06-06 13:08:38,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 22:08:56] 2025-06-06 13:08:38,063 | INFO     | did not find any defunct processes belonging to 3735243
[2025-06-06 22:08:56] 2025-06-06 13:08:38,064 | INFO     | did not find any defunct processes belonging to 3735243
[2025-06-06 22:08:56] 2025-06-06 13:08:38,064 | INFO     | ready for new job
[2025-06-06 22:08:56] 2025-06-06 13:08:38,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 22:08:56] 2025-06-06 13:08:38,065 | INFO     | **************************************
[2025-06-06 22:08:56] 2025-06-06 13:08:38,065 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 22:08:56] 2025-06-06 13:08:38,065 | INFO     | **************************************
[2025-06-06 22:08:56] 2025-06-06 13:08:38,065 | INFO     | 
[2025-06-06 22:08:56] 2025-06-06 13:08:38,078 | INFO     | architecture information:
[2025-06-06 22:08:56] 2025-06-06 13:08:38,078 | INFO     | executing command: cat /etc/os-release
[2025-06-06 22:08:56] 2025-06-06 13:08:38,086 | INFO     | cat /etc/os-release:
[2025-06-06 22:08:56] NAME="CentOS Linux"
[2025-06-06 22:08:56] VERSION="7 (Core)"
[2025-06-06 22:08:56] ID="centos"
[2025-06-06 22:08:56] ID_LIKE="rhel fedora"
[2025-06-06 22:08:56] VERSION_ID="7"
[2025-06-06 22:08:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 22:08:56] ANSI_COLOR="0;31"
[2025-06-06 22:08:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 22:08:56] HOME_URL="https://www.centos.org/"
[2025-06-06 22:08:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 22:08:56] 
[2025-06-06 22:08:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 22:08:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 22:08:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 22:08:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 22:08:56] 
[2025-06-06 22:08:56] 2025-06-06 13:08:38,087 | INFO     | **************************************
[2025-06-06 22:08:56] 2025-06-06 13:08:38,589 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-06 22:08:56] 2025-06-06 13:08:38,597 | INFO     | sufficient remaining disk space (126953193472 B)
[2025-06-06 22:08:56] 2025-06-06 13:08:38,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 22:08:56] 2025-06-06 13:08:38,597 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 22:08:56] 2025-06-06 13:08:38,597 | INFO     | update_server=False
[2025-06-06 22:08:56] 2025-06-06 13:08:38,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 22:08:56] 2025-06-06 13:08:38,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 22:08:56] 2025-06-06 13:08:38,758 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 22:08:56] 2025-06-06 13:08:38,758 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 22:08:56] 2025-06-06 13:08:38,758 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 22:08:56] 2025-06-06 13:08:38,758 | INFO     | will abort loop
[2025-06-06 22:08:56] 2025-06-06 13:08:38,883 | INFO     | PID=3728900 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 22:08:56] 2025-06-06 13:08:38,883 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 22:08:56] 2025-06-06 13:08:38,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 22:08:56] 2025-06-06 13:08:38,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 22:08:56] 2025-06-06 13:08:39,054 | INFO     | all payload control threads have been joined
[2025-06-06 22:08:56] 2025-06-06 13:08:39,116 | INFO     | all job control threads have been joined
[2025-06-06 22:08:56] 2025-06-06 13:08:39,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 22:08:56] 2025-06-06 13:08:39,602 | INFO     | [job] retrieve thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:39,603 | INFO     | [job] queue monitor thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:39,690 | INFO     | all data control threads have been joined
[2025-06-06 22:08:56] 2025-06-06 13:08:39,697 | INFO     | [job] validate thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:39,763 | INFO     | [job] job monitor thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:39,892 | INFO     | [payload] failed_post thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,059 | INFO     | [payload] control thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,086 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,121 | INFO     | [job] control thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,241 | INFO     | [payload] validate_post thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,483 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,502 | INFO     | [data] copytool_in thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:40,695 | INFO     | [data] control thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:41,075 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:41,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 22:08:56] 2025-06-06 13:08:41,300 | INFO     | [data] copytool_out thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:45,305 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:49,125 | INFO     | job.realtimelogging is not enabled
[2025-06-06 22:08:56] 2025-06-06 13:08:50,130 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 22:08:56] 2025-06-06 13:08:51,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148003956544)>', '<ExcThread(monitor, started 140147358148352)>']
[2025-06-06 22:08:56] 2025-06-06 13:08:51,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 22:08:56] 2025-06-06 13:08:51,948 | INFO     | [monitor] control thread has ended
[2025-06-06 22:08:56] 2025-06-06 13:08:56,173 | INFO     | all workflow threads have been joined
[2025-06-06 22:08:56] 2025-06-06 13:08:56,173 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 22:08:56] 2025-06-06 13:08:56,173 | INFO     | traces error code: 0
[2025-06-06 22:08:56] 2025-06-06 13:08:56,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 22:08:56] 2025-06-06 13:08:56,231 [wrapper] ==== pilot stdout END ====
[2025-06-06 22:08:56] 2025-06-06 13:08:56,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 22:08:56] 2025-06-06 13:08:56,235 [wrapper] pilotpid: 3728900
[2025-06-06 22:08:56] 2025-06-06 13:08:56,236 [wrapper] Pilot exit status: 0
[2025-06-06 22:08:56] 2025-06-06 13:08:56,241 [wrapper] pandaids: 6678365390
[2025-06-06 22:08:56] 2025-06-06 13:08:56,252 [wrapper] cleanup supervisor_pilot 3748958 3728901
[2025-06-06 22:08:56] 2025-06-06 13:08:56,253 [wrapper] Test setup, not cleaning
[2025-06-06 22:08:56] 2025-06-06 13:08:56,255 [wrapper] apfmon messages muted
[2025-06-06 22:08:56] 2025-06-06 13:08:56,256 [wrapper] ==== wrapper stdout END ====
[2025-06-06 22:08:56] 2025-06-06 13:08:56,258 [wrapper] ==== wrapper stderr END ====
[2025-06-06 22:08:56]  *** Error codes and diagnostics ***
[2025-06-06 22:08:56]     "exeErrorCode": 0,
[2025-06-06 22:08:56]     "exeErrorDiag": "",
[2025-06-06 22:08:56]     "pilotErrorCode": 0,
[2025-06-06 22:08:56]     "pilotErrorDiag": "",
[2025-06-06 22:08:56]  *** Listing of results directory ***
[2025-06-06 22:08:56] total 389924
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc    495897 Jun  4 14:59 pilot3.tar.gz
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc      5111 Jun  4 15:35 queuedata.json
[2025-06-06 22:08:56] -rwx------. 1 boinc boinc     37140 Jun  4 15:36 runpilot2-wrapper.sh
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc       100 Jun  6 20:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 22:08:56] -rwxr-xr-x. 1 boinc boinc      7986 Jun  6 20:12 run_atlas
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc       105 Jun  6 20:12 job.xml
[2025-06-06 22:08:56] -rw-r--r--. 2 boinc boinc    508883 Jun  6 20:12 input.tar.gz
[2025-06-06 22:08:56] -rw-r--r--. 2 boinc boinc 216328110 Jun  6 20:12 EVNT.45006593._002178.pool.root.1
[2025-06-06 22:08:56] -rw-r--r--. 2 boinc boinc     15093 Jun  6 20:12 start_atlas.sh
[2025-06-06 22:08:56] drwxrwx--x. 2 boinc boinc        68 Jun  6 20:12 shared
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc         0 Jun  6 20:12 boinc_lockfile
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc      2525 Jun  6 20:13 pandaJob.out
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc    985732 Jun  6 20:16 agis_schedconf.cvmfs.json
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc   1598969 Jun  6 20:16 agis_ddmendpoints.agis.ALL.json
[2025-06-06 22:08:56] drwx------. 4 boinc boinc      4096 Jun  6 20:16 pilot3
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc      9299 Jun  6 22:01 init_data.xml
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc 177407524 Jun  6 22:06 HITS.45006595._054421.pool.root.1
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc       529 Jun  6 22:07 boinc_task_state.xml
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc      1013 Jun  6 22:07 memory_monitor_summary.json
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc    242043 Jun  6 22:07 log.45006595._054421.job.log.tgz.1
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc        95 Jun  6 22:07 pilot_heartbeat.json
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc      7658 Jun  6 22:08 heartbeat.json
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc      8192 Jun  6 22:08 boinc_mmap_file
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc        27 Jun  6 22:08 wrapper_checkpoint.txt
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc      4931 Jun  6 22:08 pilotlog.txt
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc    617670 Jun  6 22:08 log.45006595._054421.job.log.1
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc       357 Jun  6 22:08 output.list
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc       620 Jun  6 22:08 runtime_log
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc    880640 Jun  6 22:08 result.tar.gz
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc      8617 Jun  6 22:08 runtime_log.err
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc       643 Jun  6 22:08 3vBNDmouwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGYnKDmbcMEpn.diag
[2025-06-06 22:08:56] -rw-r--r--. 1 boinc boinc     20565 Jun  6 22:08 stderr.txt
[2025-06-06 22:08:56] HITS file was successfully produced:
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc 177407524 Jun  6 22:06 shared/HITS.pool.root.1
[2025-06-06 22:08:56]  *** Contents of shared directory: ***
[2025-06-06 22:08:56] total 385888
[2025-06-06 22:08:56] -rw-r--r--. 2 boinc boinc    508883 Jun  6 20:12 input.tar.gz
[2025-06-06 22:08:56] -rw-r--r--. 2 boinc boinc 216328110 Jun  6 20:12 ATLAS.root_0
[2025-06-06 22:08:56] -rw-r--r--. 2 boinc boinc     15093 Jun  6 20:12 start_atlas.sh
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc 177407524 Jun  6 22:06 HITS.pool.root.1
[2025-06-06 22:08:56] -rw-------. 1 boinc boinc    880640 Jun  6 22:08 result.tar.gz
22:08:58 (3724695): run_atlas exited; CPU time 16542.275635
22:08:58 (3724695): called boinc_finish(0)

</stderr_txt>
]]>

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