Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 12:55:36 (2644775): Detected: vboxwrapper 26206
2025-06-04 12:55:36 (2644775): Detected: BOINC client v8.2.2
2025-06-04 12:55:36 (2644775): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 12:55:37 (2644775): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 12:55:38 (2644775): Create VM. (boinc_449bcb08efe6540c, slot#40)
2025-06-04 12:55:38 (2644775): Setting Memory Size for VM. (4096MB)
2025-06-04 12:55:39 (2644775): Setting CPU Count for VM. (1)
2025-06-04 12:55:39 (2644775): Setting Chipset Options for VM.
2025-06-04 12:55:39 (2644775): Setting Graphics Controller Options for VM.
2025-06-04 12:55:40 (2644775): Setting Boot Options for VM.
2025-06-04 12:55:40 (2644775): Setting Network Configuration for NAT.
2025-06-04 12:55:40 (2644775): Enabling VM Network Access.
2025-06-04 12:55:41 (2644775): Disabling USB Support for VM.
2025-06-04 12:55:41 (2644775): Disabling COM Port Support for VM.
2025-06-04 12:55:41 (2644775): Disabling LPT Port Support for VM.
2025-06-04 12:55:42 (2644775): Disabling Audio Support for VM.
2025-06-04 12:55:42 (2644775): Disabling Clipboard Support for VM.
2025-06-04 12:55:42 (2644775): Disabling Drag and Drop Support for VM.
2025-06-04 12:55:43 (2644775): Adding storage controller(s) to VM.
2025-06-04 12:55:43 (2644775): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 12:55:44 (2644775): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 12:55:44 (2644775): forwarding host port 49909 to guest port 80
2025-06-04 12:55:45 (2644775): Enabling remote desktop for VM.
2025-06-04 12:55:45 (2644775): Enabling shared directory for VM.
2025-06-04 12:55:46 (2644775): Starting VM using VBoxManage interface. (boinc_449bcb08efe6540c, slot#40)
2025-06-04 12:55:48 (2644775): Successfully started VM. (PID = '2646237')
2025-06-04 12:55:48 (2644775): Reporting VM Process ID to BOINC.
2025-06-04 12:55:48 (2644775): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 12:55:48 (2644775): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 12:55:48 (2644775): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 12:55:48 (2644775): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 12:55:48 (2644775): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 12:55:48 (2644775): Detected: Web Application Enabled (http://localhost:49909)
2025-06-04 12:55:48 (2644775): Detected: Remote Desktop Enabled (localhost:33059)
2025-06-04 12:55:48 (2644775): Preference change detected
2025-06-04 12:55:48 (2644775): Setting CPU throttle for VM. (100%)
2025-06-04 12:55:48 (2644775): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 12:55:50 (2644775): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 12:55:50 (2644775): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 12:55:53 (2644775): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 12:55:53 (2644775): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 12:55:53 (2644775): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 12:56:00 (2644775): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 12:56:00 (2644775): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 12:56:16 (2644775): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000270 main     Log opened 2025-06-04T10:56:13.920963000Z
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000427 main     OS Product: Linux
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000467 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000492 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000516 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000517 main     Process ID: 1240
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.000526 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 12:56:16 (2644775): Guest Log: 00:00:00.006082 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 12:56:16 (2644775): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 12:56:16 (2644775): Guest Log: [INFO] Mounting shared directory
2025-06-04 12:56:16 (2644775): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 12:56:23 (2644775): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 12:56:23 (2644775): Guest Log: [INFO] Detected branch: prod
2025-06-04 12:56:23 (2644775): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 12:56:23 (2644775): Guest Log: Copying input files
2025-06-04 12:56:25 (2644775): Guest Log: Copied input files into RunAtlas.
2025-06-04 12:56:25 (2644775): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-04 12:56:32 (2644775): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 12:56:33 (2644775): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 12:56:33 (2644775): Guest Log: 2.6.3.0 1513 0 29500 146777 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-04 12:56:34 (2644775): Guest Log: copied the webapp to /var/www
2025-06-04 12:56:34 (2644775): Guest Log: core_number=1
2025-06-04 12:56:34 (2644775): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 12:56:34 (2644775): Guest Log:  *** Starting ATLAS job. (PandaID=6666949428 taskID=44871837) ***
2025-06-04 14:34:49 (2644775): Status Report: Elapsed Time: '6000.000000'
2025-06-04 14:34:49 (2644775): Status Report: CPU Time: '5604.190000'
2025-06-04 16:13:49 (2644775): Status Report: Elapsed Time: '12000.000000'
2025-06-04 16:13:49 (2644775): Status Report: CPU Time: '11539.310000'
2025-06-04 17:52:50 (2644775): Status Report: Elapsed Time: '18000.000000'
2025-06-04 17:52:50 (2644775): Status Report: CPU Time: '17475.830000'
2025-06-04 19:31:50 (2644775): Status Report: Elapsed Time: '24000.000000'
2025-06-04 19:31:50 (2644775): Status Report: CPU Time: '23409.650000'
2025-06-04 21:10:51 (2644775): Status Report: Elapsed Time: '30000.000000'
2025-06-04 21:10:51 (2644775): Status Report: CPU Time: '29343.730000'
2025-06-04 22:49:51 (2644775): Status Report: Elapsed Time: '36000.000000'
2025-06-04 22:49:51 (2644775): Status Report: CPU Time: '35276.990000'
2025-06-05 00:28:52 (2644775): Status Report: Elapsed Time: '42000.000000'
2025-06-05 00:28:52 (2644775): Status Report: CPU Time: '41212.870000'
2025-06-05 02:07:52 (2644775): Status Report: Elapsed Time: '48000.000000'
2025-06-05 02:07:52 (2644775): Status Report: CPU Time: '47149.090000'
2025-06-05 03:46:53 (2644775): Status Report: Elapsed Time: '54000.000000'
2025-06-05 03:46:53 (2644775): Status Report: CPU Time: '53086.330000'
2025-06-05 05:25:53 (2644775): Status Report: Elapsed Time: '60000.000000'
2025-06-05 05:25:53 (2644775): Status Report: CPU Time: '59025.520000'
2025-06-05 07:04:54 (2644775): Status Report: Elapsed Time: '66000.000000'
2025-06-05 07:04:54 (2644775): Status Report: CPU Time: '64963.750000'
2025-06-05 08:43:55 (2644775): Status Report: Elapsed Time: '72000.000000'
2025-06-05 08:43:55 (2644775): Status Report: CPU Time: '70902.270000'
2025-06-05 10:22:55 (2644775): Status Report: Elapsed Time: '78000.000000'
2025-06-05 10:22:55 (2644775): Status Report: CPU Time: '76840.840000'
2025-06-05 10:35:41 (2644775): Guest Log:  *** Job finished ***
2025-06-05 10:35:41 (2644775): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:10,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:11,028 | INFO     | [data] copytool_out thread has finished
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:14,396 | INFO     | [data] queue_monitor thread has finished
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:16,309 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140177193342784)>', '<ExcThread(monitor, started 140176877655808)>']
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:16,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:16,747 | INFO     | [monitor] control thread has ended
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,314 | INFO     | all workflow threads have been joined
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,315 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,315 | INFO     | traces error code: 0
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,460 [wrapper] ==== pilot stdout END ====
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,466 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,471 [wrapper] pilotpid: 5755
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,477 [wrapper] Pilot exit status: 0
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,510 [wrapper] pandaids: 6666949428
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,542 [wrapper] cleanup supervisor_pilot 17296 5756
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,548 [wrapper] Test setup, not cleaning
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,555 [wrapper] apfmon messages muted
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,560 [wrapper] ==== wrapper stdout END ====
2025-06-05 10:35:41 (2644775): Guest Log: 2025-06-05 08:32:21,566 [wrapper] ==== wrapper stderr END ====
2025-06-05 10:35:41 (2644775): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 10:35:41 (2644775): Guest Log:     "exeErrorCode": 0,
2025-06-05 10:35:41 (2644775): Guest Log:     "exeErrorDiag": "",
2025-06-05 10:35:41 (2644775): Guest Log:     "pilotErrorCode": 0,
2025-06-05 10:35:41 (2644775): Guest Log:     "pilotErrorDiag": "",
2025-06-05 10:35:41 (2644775): Guest Log:  *** Listing of results directory ***
2025-06-05 10:35:41 (2644775): Guest Log: total 210740
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 11:17 pilot3.tar.gz
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 11:43 queuedata.json
2025-06-05 10:35:41 (2644775): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 11:47 runpilot2-wrapper.sh
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  4 10:56 start_atlas.sh
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas      9672 Jun  4 10:56 init_data.xml
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas    508873 Jun  4 10:56 input.tar.gz
2025-06-05 10:35:41 (2644775): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 10:56 EVNT.44871834._002634.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Jun  4 10:56 pandaJob.out
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas    986812 Jun  4 10:56 agis_schedconf.cvmfs.json
2025-06-05 10:35:41 (2644775): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 10:56 pilot3
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas 197019623 Jun  5 08:31 HITS.44871837._066901.pool.root.1
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas      1026 Jun  5 08:31 memory_monitor_summary.json
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 08:31 agis_ddmendpoints.agis.ALL.json
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas    831718 Jun  5 08:31 log.44871837._066901.job.log.tgz.1
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 08:31 pilot_heartbeat.json
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas      7729 Jun  5 08:32 heartbeat.json
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  5 08:32 pilotlog.txt
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas   6670428 Jun  5 08:32 log.44871837._066901.job.log.1
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 08:32 output.list
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 08:32 runtime_log
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas   7526400 Jun  5 08:32 result.tar.gz
2025-06-05 10:35:41 (2644775): Guest Log: -rw-r--r--. 1 atlas atlas      8472 Jun  5 08:32 runtime_log.err
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas       657 Jun  5 08:32 RjjLDmjx7d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2JZKDmI7zowm.diag
2025-06-05 10:35:41 (2644775): Guest Log: Looking for outputfile HITS.44871837._066901.pool.root.1
2025-06-05 10:35:41 (2644775): Guest Log: HITS file was successfully produced
2025-06-05 10:35:41 (2644775): Guest Log: -rw-------. 1 atlas atlas 197019623 Jun  5 08:31 /home/atlas/RunAtlas/HITS.44871837._066901.pool.root.1
2025-06-05 10:35:42 (2644775): Guest Log: Successfully finished the ATLAS job!
2025-06-05 10:35:42 (2644775): Guest Log: Copying the results back to the shared directory!
2025-06-05 10:35:42 (2644775): Guest Log:  *** Contents of shared directory: ***
2025-06-05 10:35:42 (2644775): Guest Log: total 229508
2025-06-05 10:35:42 (2644775): Guest Log: -rw-r--r--. 1 root root 226941961 Jun  4 10:55 ATLAS.root_0
2025-06-05 10:35:42 (2644775): Guest Log: -rw-r--r--. 1 root root      9672 Jun  4 10:55 init_data.xml
2025-06-05 10:35:42 (2644775): Guest Log: -rw-r--r--. 1 root root    508873 Jun  4 10:55 input.tar.gz
2025-06-05 10:35:42 (2644775): Guest Log: -rw-r--r--. 1 root root   7526400 Jun  5  2025 result.tar.gz
2025-06-05 10:35:42 (2644775): Guest Log: -rw-r--r--. 1 root root     15093 Jun  4 10:55 start_atlas.sh
2025-06-05 10:35:42 (2644775): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 10:35:42 (2644775): VM Completion File Detected.
2025-06-05 10:35:42 (2644775): Powering off VM.
2025-06-05 10:35:43 (2644775): Successfully stopped VM.
2025-06-05 10:35:43 (2644775): Deregistering VM. (boinc_449bcb08efe6540c, slot#40)
2025-06-05 10:35:44 (2644775): Removing network bandwidth throttle group from VM.
2025-06-05 10:35:44 (2644775): Removing VM from VirtualBox.
10:35:49 (2644775): called boinc_finish(0)

</stderr_txt>
]]>

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