Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:37:36 (2300731): wrapper (7.7.26015): starting
05:37:36 (2300731): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 05:37:36] Arguments: --nthreads 12
[2025-06-04 05:37:36] Threads: 12
[2025-06-04 05:37:36] Checking for CVMFS
[2025-06-04 05:37:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:37:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:37:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:37:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:37:37] 2.12.6.0 6469 650 136928 146775 2 66 26098392 32935937 7868 16776704 0 4736929 99.695 2630705 41719 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 05:37:37] CVMFS is ok
[2025-06-04 05:37:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:37:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 05:37:37] Further information can be found at the LHC@home message board.
[2025-06-04 05:37:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:37:37] Checking for apptainer binary...
[2025-06-04 05:37:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:37:37] Running /usr/bin/apptainer --version
[2025-06-04 05:37:37] apptainer version 1.4.1-1.el9
[2025-06-04 05:37:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:37:37] c6-1-26-3.aglt2.org
[2025-06-04 05:37:37] apptainer works
[2025-06-04 05:37:37] Set ATHENA_PROC_NUMBER=12
[2025-06-04 05:37:37] Set ATHENA_CORE_NUMBER=12
[2025-06-04 05:37:37] Starting ATLAS job with PandaID=6678364474
[2025-06-04 05:37:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:30:17]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:30:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 06:30:17]  replicas=None
[2025-06-04 06:30:17]  scope=mc23_13p6TeV
[2025-06-04 06:30:17]  status=None
[2025-06-04 06:30:17]  status_code=0
[2025-06-04 06:30:17]  storage_token=
[2025-06-04 06:30:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678364474/log.45006595._053974.job.log.tgz.1
[2025-06-04 06:30:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/e4/log.45006595._053974.job.log.tgz.1
[2025-06-04 06:30:17]  workdir=None
[2025-06-04 06:30:17] ]
[2025-06-04 06:30:17] 2025-06-04 10:29:52,323 | INFO     | transferring file log.45006595._053974.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678364474/log.45006595._053974.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 06:30:17] 2025-06-04 10:29:52,323 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678364474/log.45006595._053974.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._053974.job
[2025-06-04 06:30:17] 2025-06-04 10:29:52,339 | INFO     | adding to output.list: log.45006595._053974.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/e4/log.45006595._053974.job.log.tg
[2025-06-04 06:30:17] 2025-06-04 10:29:52,340 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 06:30:17] 2025-06-04 10:29:52,340 | INFO     | summary of transferred files:
[2025-06-04 06:30:17] 2025-06-04 10:29:52,340 | INFO     |  -- lfn=log.45006595._053974.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 06:30:17] 2025-06-04 10:29:52,341 | INFO     | stage-out finished correctly
[2025-06-04 06:30:17] 2025-06-04 10:29:52,742 | WARNING  | process 2312208 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 06:30:17] 2025-06-04 10:29:52,742 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678364474/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 06:30:17] 2025-06-04 10:29:52,868 | INFO     | number of running child processes to parent process 2312208: 1
[2025-06-04 06:30:17] 2025-06-04 10:29:52,868 | INFO     | maximum number of monitored processes: 6
[2025-06-04 06:30:17] 2025-06-04 10:29:54,367 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 06:30:17] 2025-06-04 10:29:54,447 | INFO     | job 6678364474 has state=finished
[2025-06-04 06:30:17] 2025-06-04 10:29:54,447 | INFO     | preparing for final server update for job 6678364474 in state='finished'
[2025-06-04 06:30:17] 2025-06-04 10:29:54,448 | INFO     | this job has now completed (state=finished)
[2025-06-04 06:30:17] 2025-06-04 10:29:54,448 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 06:30:17] 2025-06-04 10:29:54,448 | INFO     | log transfer has been attempted: DONE
[2025-06-04 06:30:17] 2025-06-04 10:29:54,449 | INFO     | job 6678364474 has finished - writing final server update
[2025-06-04 06:30:17] 2025-06-04 10:29:54,449 | INFO     | total number of processed events: 400 (read)
[2025-06-04 06:30:17] 2025-06-04 10:29:54,465 | INFO     | executing command: lscpu
[2025-06-04 06:30:17] 2025-06-04 10:29:54,520 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 06:30:17] 2025-06-04 10:29:55,371 | INFO     | monitor loop #237: job 0:6678364474 is in state 'finished'
[2025-06-04 06:30:17] 2025-06-04 10:29:55,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:30:17] 2025-06-04 10:29:55,644 | INFO     | PID=2304987 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 06:30:17] 2025-06-04 10:29:55,645 | INFO     | .. there are 8 such processes running
[2025-06-04 06:30:17] 2025-06-04 10:29:57,874 | INFO     | monitor loop #238: job 0:6678364474 is in state 'finished'
[2025-06-04 06:30:17] 2025-06-04 10:29:57,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 06:30:17] 2025-06-04 10:29:58,251 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 06:30:17] 2025-06-04 10:29:58,251 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678364474/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 06:30:17] 2025-06-04 10:29:58,252 | INFO     | extracted standard info from prmon json
[2025-06-04 06:30:17] 2025-06-04 10:29:58,252 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:30:17] 2025-06-04 10:29:58,252 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:30:17] 2025-06-04 10:29:58,253 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:30:17] 2025-06-04 10:29:58,253 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:30:17] 2025-06-04 10:29:58,254 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:30:17] 2025-06-04 10:29:58,254 | INFO     | sum of square deviations: 26400495.0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | sum of deviations: 2212063496.0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | mean x: 1749031508.5
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | mean y: 2514796.5
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | -- intersect: -146546584124.05673
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | intersect: -146546584124.05673
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | chi2: 1.1187345721801707
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | -- intersect: -146546584124.05673
[2025-06-04 06:30:17] 2025-06-04 10:29:58,255 | INFO     | current memory leak: 83.79 B/s (using 44 data points, chi2=1.12)
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | ..............................
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . Timing measurements:
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . get job = 0 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . initial setup = 2 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . payload setup = 6 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . stage-in = 0 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . payload execution = 3099 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . stage-out = 0 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | . log creation = 0 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,256 | INFO     | ..............................
[2025-06-04 06:30:17] 2025-06-04 10:29:58,462 | INFO     | 
[2025-06-04 06:30:17] 2025-06-04 10:29:58,462 | INFO     | job summary report
[2025-06-04 06:30:17] 2025-06-04 10:29:58,462 | INFO     | --------------------------------------------------
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | PanDA job id: 6678364474
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | task id: 45006595
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | errors: (none)
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | pilot state: finished 
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | transexitcode: 0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | exeerrorcode: 0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | exeerrordiag: 
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | exitcode: 0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | exitmsg: OK
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | cpuconsumptiontime: 29397 s
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | nevents: 400
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | neventsw: 0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | pid: 2312208
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | pgrp: 2312208
[2025-06-04 06:30:17] 2025-06-04 10:29:58,463 | INFO     | corecount: 12
[2025-06-04 06:30:17] 2025-06-04 10:29:58,464 | INFO     | event service: False
[2025-06-04 06:30:17] 2025-06-04 10:29:58,464 | INFO     | sizes: {0: 2404356, 1: 2405212, 5: 2405418, 12: 2405474, 3109: 2430855, 3110: 2439979, 3113: 2439979, 3116: 2440149}
[2025-06-04 06:30:17] 2025-06-04 10:29:58,464 | INFO     | --------------------------------------------------
[2025-06-04 06:30:17] 2025-06-04 10:29:58,464 | INFO     | 
[2025-06-04 06:30:17] 2025-06-04 10:29:58,464 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 06:30:17] 2025-06-04 10:29:58,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:30:17] 2025-06-04 10:29:58,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:30:17] 2025-06-04 10:29:58,484 | INFO     | job 6678364474 has completed (purged errors)
[2025-06-04 06:30:17] 2025-06-04 10:29:58,484 | INFO     | overall cleanup function is called
[2025-06-04 06:30:17] 2025-06-04 10:29:59,492 | INFO     | --- collectZombieJob: --- 10, [2312208]
[2025-06-04 06:30:17] 2025-06-04 10:29:59,492 | INFO     | zombie collector waiting for pid 2312208
[2025-06-04 06:30:17] 2025-06-04 10:29:59,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:30:17] 2025-06-04 10:29:59,492 | INFO     | collected zombie processes
[2025-06-04 06:30:17] 2025-06-04 10:29:59,492 | INFO     | will attempt to kill all subprocesses of pid=2312208
[2025-06-04 06:30:17] 2025-06-04 10:29:59,684 | INFO     | process IDs to be killed: [2312208] (in reverse order)
[2025-06-04 06:30:17] 2025-06-04 10:29:59,761 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:30:17] 2025-06-04 10:29:59,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:30:17] 2025-06-04 10:29:59,770 | INFO     | did not find any defunct processes belonging to 2312208
[2025-06-04 06:30:17] 2025-06-04 10:29:59,778 | INFO     | did not find any defunct processes belonging to 2312208
[2025-06-04 06:30:17] 2025-06-04 10:29:59,779 | INFO     | ready for new job
[2025-06-04 06:30:17] 2025-06-04 10:29:59,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:30:17] 2025-06-04 10:29:59,781 | INFO     | **************************************
[2025-06-04 06:30:17] 2025-06-04 10:29:59,781 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:30:17] 2025-06-04 10:29:59,782 | INFO     | **************************************
[2025-06-04 06:30:17] 2025-06-04 10:29:59,782 | INFO     | 
[2025-06-04 06:30:17] 2025-06-04 10:29:59,797 | INFO     | architecture information:
[2025-06-04 06:30:17] 2025-06-04 10:29:59,797 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:30:17] 2025-06-04 10:29:59,813 | INFO     | cat /etc/os-release:
[2025-06-04 06:30:17] NAME="CentOS Linux"
[2025-06-04 06:30:17] VERSION="7 (Core)"
[2025-06-04 06:30:17] ID="centos"
[2025-06-04 06:30:17] ID_LIKE="rhel fedora"
[2025-06-04 06:30:17] VERSION_ID="7"
[2025-06-04 06:30:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:30:17] ANSI_COLOR="0;31"
[2025-06-04 06:30:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:30:17] HOME_URL="https://www.centos.org/"
[2025-06-04 06:30:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:30:17] 
[2025-06-04 06:30:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:30:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:30:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:30:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:30:17] 
[2025-06-04 06:30:17] 2025-06-04 10:29:59,813 | INFO     | **************************************
[2025-06-04 06:30:17] 2025-06-04 10:30:00,316 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 06:30:17] 2025-06-04 10:30:00,336 | INFO     | sufficient remaining disk space (76303826944 B)
[2025-06-04 06:30:17] 2025-06-04 10:30:00,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:30:17] 2025-06-04 10:30:00,336 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:30:17] 2025-06-04 10:30:00,336 | INFO     | update_server=False
[2025-06-04 06:30:17] 2025-06-04 10:30:00,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:30:17] 2025-06-04 10:30:00,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:30:17] 2025-06-04 10:30:00,337 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 06:30:17] 2025-06-04 10:30:00,338 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:30:17] 2025-06-04 10:30:00,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:30:17] 2025-06-04 10:30:00,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:30:17] 2025-06-04 10:30:00,377 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 06:30:17] 2025-06-04 10:30:00,377 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 06:30:17] 2025-06-04 10:30:00,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:30:17] 2025-06-04 10:30:00,377 | INFO     | will abort loop
[2025-06-04 06:30:17] 2025-06-04 10:30:00,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:30:17] 2025-06-04 10:30:00,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:30:17] 2025-06-04 10:30:00,647 | INFO     | all job control threads have been joined
[2025-06-04 06:30:17] 2025-06-04 10:30:00,841 | INFO     | all data control threads have been joined
[2025-06-04 06:30:17] 2025-06-04 10:30:01,342 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:01,343 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:01,347 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:01,382 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:01,556 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:01,652 | INFO     | [job] control thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:01,729 | INFO     | all payload control threads have been joined
[2025-06-04 06:30:17] 2025-06-04 10:30:01,847 | INFO     | [data] control thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,173 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,432 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,457 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,486 | INFO     | [job] validate thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,611 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,662 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:02,734 | INFO     | [payload] control thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:04,459 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:10,835 | INFO     | job.realtimelogging is not enabled
[2025-06-04 06:30:17] 2025-06-04 10:30:11,841 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:30:17] 2025-06-04 10:30:12,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890496276288)>', '<ExcThread(monitor, started 139889987262208)>']
[2025-06-04 06:30:17] 2025-06-04 10:30:12,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:30:17] 2025-06-04 10:30:12,396 | INFO     | [monitor] control thread has ended
[2025-06-04 06:30:17] 2025-06-04 10:30:17,078 | INFO     | all workflow threads have been joined
[2025-06-04 06:30:17] 2025-06-04 10:30:17,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:30:17] 2025-06-04 10:30:17,079 | INFO     | traces error code: 0
[2025-06-04 06:30:17] 2025-06-04 10:30:17,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:30:17] 2025-06-04 10:30:17,273 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:30:17] 2025-06-04 10:30:17,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:30:17] 2025-06-04 10:30:17,277 [wrapper] pilotpid: 2304987
[2025-06-04 06:30:17] 2025-06-04 10:30:17,279 [wrapper] Pilot exit status: 0
[2025-06-04 06:30:17] 2025-06-04 10:30:17,289 [wrapper] pandaids: 6678364474
[2025-06-04 06:30:17] 2025-06-04 10:30:17,339 [wrapper] cleanup supervisor_pilot 2389010 2304988
[2025-06-04 06:30:17] 2025-06-04 10:30:17,343 [wrapper] Test setup, not cleaning
[2025-06-04 06:30:17] 2025-06-04 10:30:17,348 [wrapper] apfmon messages muted
[2025-06-04 06:30:17] 2025-06-04 10:30:17,351 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:30:17] 2025-06-04 10:30:17,354 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:30:17]  *** Error codes and diagnostics ***
[2025-06-04 06:30:17]     "exeErrorCode": 0,
[2025-06-04 06:30:17]     "exeErrorDiag": "",
[2025-06-04 06:30:17]     "pilotErrorCode": 0,
[2025-06-04 06:30:17]     "pilotErrorDiag": "",
[2025-06-04 06:30:17]  *** Listing of results directory ***
[2025-06-04 06:30:17] total 390536
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:22 queuedata.json
[2025-06-04 06:30:17] -rwx------. 1 boincer umatlas     37140 Jun  4 02:23 runpilot2-wrapper.sh
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas       100 Jun  4 05:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:30:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 05:37 run_atlas
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas       105 Jun  4 05:37 job.xml
[2025-06-04 06:30:17] -rw-r--r--. 2 boincer umatlas 213574718 Jun  4 05:37 EVNT.45006593._002160.pool.root.1
[2025-06-04 06:30:17] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 05:37 start_atlas.sh
[2025-06-04 06:30:17] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 05:37 shared
[2025-06-04 06:30:17] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 05:37 input.tar.gz
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas         0 Jun  4 05:37 boinc_lockfile
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 05:37 pandaJob.out
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas    986766 Jun  4 05:37 agis_schedconf.cvmfs.json
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas   1603667 Jun  4 05:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:30:17] drwx------. 4 boincer umatlas      4096 Jun  4 05:37 pilot3
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas      6839 Jun  4 06:27 init_data.xml
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas 181144406 Jun  4 06:29 HITS.45006595._053974.pool.root.1
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas       529 Jun  4 06:29 boinc_task_state.xml
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas        95 Jun  4 06:29 pilot_heartbeat.json
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas      1028 Jun  4 06:29 memory_monitor_summary.json
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas    351826 Jun  4 06:29 log.45006595._053974.job.log.tgz.1
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas      7710 Jun  4 06:29 heartbeat.json
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 06:30 boinc_mmap_file
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas      4734 Jun  4 06:30 pilotlog.txt
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas        27 Jun  4 06:30 wrapper_checkpoint.txt
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas    328832 Jun  4 06:30 log.45006595._053974.job.log.1
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas       357 Jun  4 06:30 output.list
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas       620 Jun  4 06:30 runtime_log
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas    696320 Jun  4 06:30 result.tar.gz
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 06:30 runtime_log.err
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas       652 Jun  4 06:30 DyQMDmwhwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaSnKDmZZE9rn.diag
[2025-06-04 06:30:17] -rw-r--r--. 1 boincer umatlas     21891 Jun  4 06:30 stderr.txt
[2025-06-04 06:30:17] HITS file was successfully produced:
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas 181144406 Jun  4 06:29 shared/HITS.pool.root.1
[2025-06-04 06:30:17]  *** Contents of shared directory: ***
[2025-06-04 06:30:17] total 386672
[2025-06-04 06:30:17] -rw-r--r--. 2 boincer umatlas 213574718 Jun  4 05:37 ATLAS.root_0
[2025-06-04 06:30:17] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 05:37 start_atlas.sh
[2025-06-04 06:30:17] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 05:37 input.tar.gz
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas 181144406 Jun  4 06:29 HITS.pool.root.1
[2025-06-04 06:30:17] -rw-------. 1 boincer umatlas    696320 Jun  4 06:30 result.tar.gz
06:30:19 (2300731): run_atlas exited; CPU time 29425.303889
06:30:19 (2300731): called boinc_finish(0)

</stderr_txt>
]]>

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